105034 2005-09-06 09:09 0000 scilab 3.1.1-r1 fails 2005-09-08 09:15:26 0000 1 1 1 Unclassified Gentoo Linux Ebuilds 2005.0 All Linux RESOLVED FIXED P2 normal --- 1 hetfield666@gmail.com pbienst@gentoo.org sci@gentoo.org hetfield666@gmail.com 2005-09-06 09:09:02 0000 cc -O -DNDEBUG -Dlinux -fwritable-strings -DNARROWPROTO -DWITH_ATLAS `pkg-config gtk+-2.0 --cflags` -I/opt/sun-jdk-1.5.0.04/include -I/opt/sun-jdk-1.5.0.04/include/linux -c -o fix.o fix.c cc1: note: -fwritable-strings is deprecated; see documentation for details Creation of ../../bin/libjavasci.so linking /usr/lib/gcc/i686-pc-linux-gnu/3.4.4/../../../../i686-pc-linux-gnu/bin/ld: warning: creating a DT_TEXTREL in object. make[1]: Leaving directory `/mnt/Dati/Gentoo/tmp/portage/scilab-3.1.1-r1/work/scilab-3.1.1/routines/Javasci' linking /var/tmp/portage/scilab-3.1.1-r1/work/scilab-3.1.1/pvm3/lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead /var/tmp/portage/scilab-3.1.1-r1/work/scilab-3.1.1/libs/system.a(scicurdir.o): In function `scigetcwd_': scicurdir.c:(.text+0x79): warning: the `getwd' function is dangerous and should not be used. /var/tmp/portage/scilab-3.1.1-r1/work/scilab-3.1.1/libs/sun.a(link.o): In function `CreateShared': link.c:(.text+0x536): warning: the use of `mktemp' is dangerous, better use `mkstemp' /usr/lib/liblapack.so: undefined reference to `cblas_dswap' /usr/lib/liblapack.so: undefined reference to `cblas_ssyrk' /usr/lib/liblapack.so: undefined reference to `cblas_icamax' /usr/lib/liblapack.so: undefined reference to `cblas_isamax' /usr/lib/liblapack.so: undefined reference to `cblas_izamax' /usr/lib/liblapack.so: undefined reference to `cblas_dsyrk' /usr/lib/liblapack.so: undefined reference to `cblas_cgemm' /usr/lib/liblapack.so: undefined reference to `cblas_strsm' /usr/lib/liblapack.so: undefined reference to `cblas_cscal' /usr/lib/liblapack.so: undefined reference to `cblas_dtrsm' /usr/lib/liblapack.so: undefined reference to `cblas_dtrmm' /usr/lib/liblapack.so: undefined reference to `cblas_dgemm' /usr/lib/liblapack.so: undefined reference to `cblas_zherk' /usr/lib/liblapack.so: undefined reference to `cblas_cherk' /usr/lib/liblapack.so: undefined reference to `cblas_ztrmm' /usr/lib/liblapack.so: undefined reference to `cblas_sscal' /usr/lib/liblapack.so: undefined reference to `cblas_ztrsm' /usr/lib/liblapack.so: undefined reference to `cblas_cswap' /usr/lib/liblapack.so: undefined reference to `cblas_sgemm' /usr/lib/liblapack.so: undefined reference to `cblas_ctrmm' /usr/lib/liblapack.so: undefined reference to `cblas_strmm' /usr/lib/liblapack.so: undefined reference to `cblas_dscal' /usr/lib/liblapack.so: undefined reference to `cblas_zscal' /usr/lib/liblapack.so: undefined reference to `cblas_zswap' /usr/lib/liblapack.so: undefined reference to `cblas_zgemm' /usr/lib/liblapack.so: undefined reference to `cblas_sswap' /usr/lib/liblapack.so: undefined reference to `cblas_ctrsm' /usr/lib/liblapack.so: undefined reference to `cblas_idamax' /usr/lib/liblapack.so: undefined reference to `cblas_xerbla' collect2: ld returned 1 exit status make: *** [bin/scilex] Error 1 !!! ERROR: sci-mathematics/scilab-3.1.1-r1 failed. !!! Function src_compile, Line 96, Exitcode 2 !!! (no error message) !!! If you need support, post the topmost build error, NOT this status message. pbienst@gentoo.org 2005-09-06 10:12:37 0000 Could you please give the output from the following three comments: >ldd /usr/lib/liblapack.so >lapack-config -p -l >emerge info hetfield666@gmail.com 2005-09-06 10:55:41 0000 ldd /usr/lib/liblapack.so linux-gate.so.1 => (0xffffe000) libblas.so.0 => /usr/lib/libblas.so.0 (0xb7a4f000) libcblas.so.0 => /usr/lib/libcblas.so.0 (0xb7a49000) libatlas.so.0 => /usr/lib/libatlas.so.0 (0xb77a4000) libg2c.so.0 => /usr/lib/gcc/i686-pc-linux-gnu/3.4.4/libg2c.so.0 (0xb7786000) libc.so.6 => /lib/libc.so.6 (0xb7657000) libm.so.6 => /lib/libm.so.6 (0xb7634000) libgcc_s.so.1 => /usr/lib/gcc/i686-pc-linux-gnu/3.4.4/libgcc_s.so.1 (0xb762b000) /lib/ld-linux.so.2 (0x80000000) lapack-config -p -l Current profile: F77 LAPACK: /usr/lib/lapack/f77-ATLAS Available F77 profiles: [1] ATLAS emerge info Portage 2.0.51.22-r2 (default-linux/x86/2005.1, gcc-3.4.4, glibc-2.3.5-r1, 2.6.13 i686) ================================================================= System uname: 2.6.13 i686 Pentium III (Katmai) Gentoo Base System version 1.12.0_pre8 distcc 2.18.3 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] ccache version 2.4 [disabled] dev-lang/python: 2.4.1-r1 sys-apps/sandbox: 1.2.12 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6 sys-devel/binutils: 2.16.1 sys-devel/libtool: 1.5.20 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-O3 -mtune=pentium3 -march=pentium3 -pipe -fomit-frame-pointer -mmmx -msse" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/openjms/config /usr/kde/2/share/config /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib/mozilla/defaults/pref /usr/share/config /var/bind /var/qmail/control /var/run/dspam /var/spool/dspam" CONFIG_PROTECT_MASK="/etc/gconf /etc/splash /etc/terminfo /etc/texmf/web2c /etc/env.d" CXXFLAGS="-O3 -mtune=pentium3 -march=pentium3 -pipe -fomit-frame-pointer -mmmx -msse" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks fixpackages sandbox sfperms strict" GENTOO_MIRRORS="http://gentoo.ngi.it http://www.die.unipd.it/pub/Linux/distributions/gentoo-sources/" LANG="it_IT@euro" LC_ALL="it_IT@euro" LINGUAS="it" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="x86 X X509 Xaw3d a52 aac aalib accessibility acl acpi activefilter adns alsa apache2 apm arts audiofile avi bash-completion berkdb bidi bitmap-fonts bonobo bootsplash caps cdda cddb cdio cdparanoia cdr cgi chroot clamav cli client codecs crypt css cups curl dba dbus dga dhcp directfb divx4linux djbfft dlloader dri edl eds emboss encode ethereal exif extraengine faac faad fam fbcon ffmpeg fftw flac flash foomaticdb foreign-package fortran freetds gcj gd gdbm geometry ggi gif gimp gimpprint glx gnokii gnome gphoto2 gpm graphviz gs gstreamer gtk gtk2 gtkhtml guile iconv idea imagemagick imlib innodb irda irmc jack java javascript jikes jit joystick jpeg jpeg2k junit justify kde kdeenablefinal kerberos kqemu lcd ldap libcaca libclamav libg++ libgda libusb libwww lirc live lm_sensors lzo mad mailwrapper matroska md5sum mdb mikmod mime mmx mmx2 mmxext mng mono motif mozcalendar mozdevelop mozilla mozsvg mozxmlterm mp3 mpeg mpeg2 mpeg4 mplayer mysql mysqli mythtv nagios-dns nagios-ntp nagios-ping nagios-ssh ncurses neXt network nls nntp no_wxgtk1 nobsh nopie nossp noxalan nptl nptlonly nsplugin oav odbc ogg oggvorbis opengl operanom2 oss pam pcre pda pdf pdflib pdo pear perl png pnp postgres ppds pthreads python qemu-fast qhull qt quicktime quotas readline real rrdtool rtc ruby samba scanner sdl server session sftplogging slang slp snortsam soap sockets socks5 softmmu softquota spamassassin speex spell sqlite3 sse ssl subject-rewrite svg svga tcltk tcpd tetex tga theora tiff tokenizer truetype truetype-fonts trusted type1-fonts usb userlocales vidix vorbis win32codecs wsconvert wxwindows xanim xchatdccserver xchattext xine xinerama xml xml2 xmlrpc xmms xosd xpm xprint xsl xv xvid xvm xvmc zlib linguas_it userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LDFLAGS, MAKEOPTS pbienst@gentoo.org 2005-09-07 04:15:02 0000 I've committed a change to the ebuild, which should make it to the mirrors in a few hours. If that change doesn't work, could you try re-emerging blas-atlas and give the output of 'blas-config -l -p'? hetfield666@gmail.com 2005-09-07 05:29:35 0000 blas-config -l -p Available C profiles: [1] ATLAS Available F77 profiles: [1] ATLAS [2] reference Current profiles: F77 BLAS: /usr/lib/blas/f77-reference C BLAS: /usr/lib/blas/c-ATLAS hetfield666@gmail.com 2005-09-07 05:30:20 0000 this is with actual configuration. i'll wait a sync, and remerge blas and scilab... pbienst@gentoo.org 2005-09-07 05:43:59 0000 Best to also try re-emerging lapack-atlas. BTW, for speed you might want to do: blas-config f77-ATLAS hetfield666@gmail.com 2005-09-07 05:59:33 0000 blas-config f77-ATLAS * /usr/lib/libblas.so -> blas/atlas/libblas.so * /usr/lib/libblas.so.0 -> blas/atlas/libblas.so.0 * /usr/lib/libblas.a -> blas/atlas/libblas.a >>> Regenerating /etc/ld.so.cache... but nothing changed. i'm now rebuild emerge blas-atlas lapack-atlas and i'll try again. slow cpu...500mhz...so it will last hours.. hetfield666@gmail.com 2005-09-07 11:32:03 0000 after reemerging both, no luck. i'll try the new ebuild, i saw it links agains blas libs. hetfield666@gmail.com 2005-09-08 05:10:08 0000 very very bad news. **same** error after reemerging blas and atlas. i tried new ebuild, of course...libs change had no luck. any hints? pbienst@gentoo.org 2005-09-08 05:18:01 0000 Created an attachment (id=67923) new version pbienst@gentoo.org 2005-09-08 05:19:34 0000 I cannot reproduce your bug. Could you overwrite your ebuild with the attached version? cd to the correct directory, type 'ebuild scilab 3.1.1-r1.ebuild digest' and try re-emerging. hetfield666@gmail.com 2005-09-08 06:28:46 0000 new ebuilds works perfectly. please commit. thanks, nice work! pbienst@gentoo.org 2005-09-08 09:15:26 0000 Done. I'm not too happy about the way I fixed this, but I guess it'll have to do for the time being. 67923 2005-09-08 05:18 0000 new version scilab-3.1.1-r1.ebuild text/plain IyBDb3B5cmlnaHQgMTk5OS0yMDA1IEdlbnRvbyBGb3VuZGF0aW9uCiMgRGlzdHJpYnV0ZWQgdW5k ZXIgdGhlIHRlcm1zIG9mIHRoZSBHTlUgR2VuZXJhbCBQdWJsaWMgTGljZW5zZSB2MgojICRIZWFk ZXI6IC92YXIvY3Zzcm9vdC9nZW50b28teDg2L3NjaS1tYXRoZW1hdGljcy9zY2lsYWIvc2NpbGFi LTMuMS4xLXIxLmVidWlsZCx2IDEuMiAyMDA1LzA5LzA3IDExOjEzOjAxIHBiaWVuc3QgRXhwICQK CmluaGVyaXQgZXV0aWxzCgpERVNDUklQVElPTj0iU2NpZW50aWZpYyBzb2Z0d2FyZSBwYWNrYWdl IGZvciBudW1lcmljYWwgY29tcHV0YXRpb25zIChNYXRsYWIgbG9va2FsaWtlKSIKU1JDX1VSST0i aHR0cDovL3NjaWxhYnNvZnQuaW5yaWEuZnIvZG93bmxvYWQvc3RhYmxlLyR7UH0tc3JjLnRhci5n eiIKSE9NRVBBR0U9Imh0dHA6Ly93d3cuc2NpbGFiLm9yZy8iCgpMSUNFTlNFPSJzY2lsYWIiClNM T1Q9IjAiCktFWVdPUkRTPSJ+eDg2IH5wcGMiCklVU0U9ImlmYyBvY2FtbCB0Y2x0ayBndGsgZ3Rr MiBYYXczZCIKClJERVBFTkQ9InZpcnR1YWwveDExCgl2aXJ0dWFsL2JsYXMKCXZpcnR1YWwvbGFw 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