build.log

build.log (text/plain), 84.33 KB, created by Agostino Sarubbo on 2022-01-28 08:54:10 UTC

 * Package:    sci-biology/augustus-3.4.0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox


@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix;
This ebuild was merged at the following commit:
https://github.com/gentoo/gentoo/commit/6d23b4bc225901adf3a998ac7c5dd84facaa543e  (Thu Jan 27 19:11:28 UTC 2022)
@@@@@ END @@@@@



@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
This ebuild was merged (directly or as a dependency) because of the following commit:
https://github.com/gentoo/gentoo/commit/aea4f8147ac23b904f17d3890b398d5fb30c9eee
@@@@@ END @@@@@



##################
# emerge --info: #
##################
!!! It seems /run is not mounted. Process management may malfunction.
Portage 3.0.30 (python 3.10.2-final-0, default/linux/amd64/17.1, gcc-11.2.1, glibc-2.34-r7, 4.19.174-gentoo x86_64)
=================================================================
System uname: Linux-4.19.174-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-glibc2.34
KiB Mem:   264046488 total,  79300240 free
KiB Swap:          0 total,         0 free
sh bash 5.1_p16
ld GNU ld (Gentoo 2.37_p1 p2) 2.37
app-misc/pax-utils:        1.3.3::gentoo
app-shells/bash:           5.1_p16::gentoo
dev-lang/perl:             5.34.0-r6::gentoo
dev-lang/python:           2.7.18_p13::gentoo, 3.8.12_p1-r2::gentoo, 3.9.10-r1::gentoo, 3.10.2-r1::gentoo
dev-lang/rust:             1.58.1::gentoo
dev-util/cmake:            3.22.2::gentoo
dev-util/meson:            0.60.3::gentoo
sys-apps/baselayout:       2.8::gentoo
sys-apps/openrc:           0.44.10::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-devel/autoconf:        2.13-r1::gentoo, 2.71-r1::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.37_p1-r2::gentoo
sys-devel/binutils-config: 5.4::gentoo
sys-devel/gcc:             11.2.1_p20220115::gentoo
sys-devel/gcc-config:      2.5-r1::gentoo
sys-devel/libtool:         2.4.6-r6::gentoo
sys-devel/llvm:            13.0.0::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.16::gentoo (virtual/os-headers)
sys-libs/glibc:            2.34-r7::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* Artistic"
AR="x86_64-pc-linux-gnu-ar"
AS="x86_64-pc-linux-gnu-as"
CBUILD="x86_64-pc-linux-gnu"
CC="x86_64-pc-linux-gnu-gcc"
CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CPP="x86_64-pc-linux-gnu-gcc -E"
CXX="x86_64-pc-linux-gnu-g++"
CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0"
DISTDIR="/var/tmp/portage/sci-biology/augustus-3.4.0/distdir"
EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0"
GCOV="x86_64-pc-linux-gnu-gcov"
GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org"
LANG="en_US.utf8"
LD="x86_64-pc-linux-gnu-ld"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
MAKEOPTS="-j40"
NM="x86_64-pc-linux-gnu-nm"
OBJCOPY="x86_64-pc-linux-gnu-objcopy"
OBJDUMP="x86_64-pc-linux-gnu-objdump"
PKGDIR="/root/tbci/binpkg"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RANLIB="x86_64-pc-linux-gnu-ranlib"
READELF="x86_64-pc-linux-gnu-readelf"
SHELL="/bin/bash"
STRIP="x86_64-pc-linux-gnu-strip"
USE="acl amd64 bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU"
Unset:  ADDR2LINE, ARFLAGS, ASFLAGS, CCLD, CONFIG_SHELL, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GPROF, INSTALL_MASK, LC_ALL, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS, SIZE, STRINGS, YACC, YFLAGS





##############################
# emerge history (qlop -mv): #
##############################
2022-01-27T20:13:35 >>> sci-libs/suitesparseconfig-5.4.0
2022-01-27T20:13:36 >>> dev-util/boost-build-1.78.0-r1
2022-01-27T20:13:38 >>> virtual/fortran-0
2022-01-27T20:13:40 >>> sci-libs/gsl-2.7.1-r1
2022-01-27T20:13:41 >>> sci-libs/metis-5.1.0-r5
2022-01-27T20:13:57 >>> sci-libs/btf-1.2.6
2022-01-27T20:13:55 >>> sci-libs/colamd-2.9.6
2022-01-27T20:13:59 >>> sci-libs/cxsparse-3.2.0
2022-01-27T20:13:37 >>> sci-libs/htslib-1.13
2022-01-27T20:14:00 >>> sci-libs/ldl-2.2.6
2022-01-27T20:13:43 >>> sci-biology/bamtools-2.5.2
2022-01-27T20:14:01 >>> dev-libs/boost-1.78.0-r2
2022-01-27T20:13:58 >>> sci-libs/ccolamd-2.9.6
2022-01-27T20:14:05 >>> sci-libs/lapack-3.10.0
2022-01-27T20:14:03 >>> sci-libs/camd-2.4.6-r1
2022-01-27T20:14:07 >>> sci-libs/amd-2.4.6-r1
2022-01-27T20:14:39 >>> sci-mathematics/lpsolve-5.5.2.0
2022-01-27T20:13:42 >>> app-arch/lz4-1.9.3-r1
2022-01-27T20:15:33 >>> virtual/blas-3.8
2022-01-27T20:15:31 >>> virtual/lapack-3.10
2022-01-27T20:15:55 >>> dev-db/mysql-connector-c-8.0.27
2022-01-27T20:16:08 >>> sci-libs/cholmod-3.0.13
2022-01-27T20:16:22 >>> sci-libs/umfpack-5.7.9
2022-01-27T20:16:20 >>> sci-libs/spqr-2.0.9-r2
2022-01-27T20:15:44 >>> sci-libs/klu-1.3.9-r2
2022-01-27T20:16:45 >>> sci-libs/suitesparse-5.4.0
2022-01-27T20:16:16 >>> dev-db/mysql++-3.3.0
2022-01-27T20:24:15 >>> sci-biology/augustus-3.4.0
2022-01-27T20:25:50 >>> sys-devel/binutils-config-5.4
2022-01-27T20:25:50 >>> dev-lang/python-exec-2.4.8
2022-01-27T20:25:50 >>> sys-devel/gcc-config-2.5-r1




#######################################
# installed packages (qlist -ICvUSS): #
#######################################
acct-group/audio-0-r1:0
acct-group/cdrom-0-r1:0
acct-group/dialout-0-r1:0
acct-group/disk-0-r1:0
acct-group/input-0-r1:0
acct-group/kmem-0-r1:0
acct-group/kvm-0-r1:0
acct-group/lp-0-r1:0
acct-group/man-0-r1:0
acct-group/messagebus-0-r1:0
acct-group/polkitd-0-r1:0
acct-group/portage-0:0
acct-group/render-0-r1:0
acct-group/sgx-0:0
acct-group/sshd-0-r1:0
acct-group/tape-0-r1:0
acct-group/tty-0-r1:0
acct-group/video-0-r1:0
acct-user/man-1-r1:0
acct-user/messagebus-0-r1:0
acct-user/polkitd-0-r1:0
acct-user/portage-0:0
acct-user/sshd-0-r1:0
app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax
app-admin/perl-cleaner-2.30:0
app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs
app-arch/gzip-1.11:0 -pic -static
app-arch/libarchive-3.5.2:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs xattr zlib -zstd
app-arch/lz4-1.9.3-r1:0/r132 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
app-arch/tar-1.34:0 acl -minimal nls -selinux xattr
app-arch/unzip-6.0_p26:0 bzip2 -natspec unicode
app-arch/xz-utils-5.2.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs
app-arch/zstd-1.5.2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 -static-libs threads
app-crypt/gnupg-2.3.4:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -usb -user-socket -wks-server
app-crypt/gpgme-1.16.0:1/11 -common-lisp cxx -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs
app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs
app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
app-crypt/pinentry-1.2.0:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5
app-crypt/rhash-1.4.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs
app-editors/nano-6.0:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode
app-eselect/eselect-fontconfig-1.1-r1:0
app-eselect/eselect-iptables-20211203:0
app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0
app-eselect/eselect-pinentry-0.7.2:0
app-eselect/eselect-rust-20210703:0
app-i18n/man-pages-ja-20180315-r1:0
app-i18n/man-pages-l10n-4.10.0:0 l10n_de l10n_es l10n_fr l10n_it l10n_nl l10n_pl l10n_pt-BR l10n_ro
app-i18n/man-pages-ru-5.03.2390.2390.20191017-r1:0
app-i18n/man-pages-zh_CN-1.6.3.6:0
app-misc/c_rehash-1.7-r1:0
app-misc/ca-certificates-20211016.3.72:0 -cacert
app-misc/editor-wrapper-4-r1:0
app-misc/mime-types-2.1.53:0 -nginx
app-misc/pax-utils-1.3.3:0 -caps -debug -python -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 seccomp
app-misc/tmux-3.2a:0 -debug -selinux -utempter -vim-syntax
app-portage/eix-0.36.1:0 -debug -doc nls -sqlite
app-portage/elt-patches-20211104:0
app-portage/gemato-16.2:0 gpg python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test -tools
app-portage/gentoolkit-0.5.1-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
app-portage/portage-utils-0.93.3:0 nls openmp qmanifest qtegrity -static
app-shells/bash-5.1_p16:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline
app-shells/push-3.4:0
app-shells/quoter-4.2:0
app-text/ansifilter-2.18:0 -qt5
app-text/build-docbook-catalog-2.2:0
app-text/docbook-xml-dtd-4.5-r2:4.5
app-text/docbook-xml-dtd-4.4-r3:4.4
app-text/docbook-xml-dtd-4.2-r3:4.2
app-text/docbook-xml-dtd-4.1.2-r7:4.1.2
app-text/docbook-xsl-stylesheets-1.79.1-r2:0 -ruby
app-text/manpager-1:0
app-text/opensp-1.5.2-r7:0 -doc nls -static-libs -test
app-text/po4a-0.65:0 -test -test
app-text/sgml-common-0.6.3-r7:0
app-text/xmlto-0.0.28-r8:0 -latex -text
dev-db/mysql++-3.3.0:0/3 -doc
dev-db/mysql-connector-c-8.0.27:0/21 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ldap -static-libs
dev-db/sqlite-3.37.2:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools
dev-lang/perl-5.34.0-r6:0/5.34 -berkdb -debug -doc gdbm ithreads -minimal
dev-lang/python-3.10.2-r1:3.10 -bluetooth -build -examples gdbm -hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml
dev-lang/python-3.9.10-r1:3.9 -bluetooth -build -examples gdbm -hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml
dev-lang/python-3.8.12_p1-r2:3.8 -bluetooth -build -examples gdbm -hardened ncurses readline sqlite ssl -test -tk -verify-sig -wininst xml
dev-lang/python-2.7.18_p13:2.7 -berkdb -bluetooth -build -examples gdbm -hardened ncurses readline sqlite ssl -tk -verify-sig -wininst xml
dev-lang/python-exec-2.4.8:2 -native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-lang/python-exec-conf-2.4.6:2 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9
dev-lang/rust-1.58.1:stable/1.58 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -clippy cpu_flags_x86_sse2 -debug -dist -doc -llvm_targets_AArch64 -llvm_targets_AMDGPU -llvm_targets_ARM -llvm_targets_AVR -llvm_targets_BPF -llvm_targets_Hexagon -llvm_targets_Lanai -llvm_targets_MSP430 -llvm_targets_Mips -llvm_targets_NVPTX -llvm_targets_PowerPC -llvm_targets_RISCV -llvm_targets_Sparc -llvm_targets_SystemZ -llvm_targets_WebAssembly llvm_targets_X86 -llvm_targets_XCore -miri -nightly -parallel-compiler -rls -rust-src rustfmt -system-bootstrap -system-llvm -test -verify-sig -wasm
dev-lang/spidermonkey-78.15.0:78 -clang -cpu_flags_arm_neon -debug jit -lto -test
dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads
dev-libs/boost-1.78.0-r2:0/1.78.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -context -debug -doc -icu -lzma -mpi nls -numpy -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -tools zlib -zstd
dev-libs/elfutils-0.186:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test -threads utils -valgrind -zstd
dev-libs/expat-2.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode
dev-libs/glib-2.70.3:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -fam -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr
dev-libs/gmp-6.2.1-r2:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cxx -doc -pic -static-libs
dev-libs/gobject-introspection-1.70.0:0 -doctool -gtk-doc -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 -test
dev-libs/gobject-introspection-common-1.70.0:0
dev-libs/icu-70.1-r1:0/70.1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -examples -static-libs
dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/jsoncpp-1.9.5:0/25 -doc -test
dev-libs/libassuan-2.5.5:0
dev-libs/libbsd-0.11.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/libevent-2.1.12:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime -debug -malloc-replacement ssl -static-libs -test threads -verbose-debug
dev-libs/libffi-3.4.2-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -exec-static-trampoline -pax-kernel -static-libs -test
dev-libs/libgcrypt-1.9.4:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc -o-flag-munging -static-libs
dev-libs/libgpg-error-1.44:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs
dev-libs/libksba-1.6.0:0 -static-libs
dev-libs/libltdl-2.4.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/libpcre-8.45:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 cxx jit -libedit pcre16 pcre32 readline recursion-limit split-usr -static-libs unicode zlib
dev-libs/libpcre2-10.39:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 jit -libedit pcre16 pcre32 readline recursion-limit split-usr -static-libs unicode zlib
dev-libs/libpipeline-1.5.5:0 -test
dev-libs/libtasn1-4.18.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind
dev-libs/libunistring-0.9.10-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs
dev-libs/libuv-1.43.0:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
dev-libs/libxml2-2.9.12-r5:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples -icu ipv6 -lzma python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -static-libs -test -verify-sig
dev-libs/libxslt-1.1.34-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt -debug -examples -static-libs -verify-sig
dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs
dev-libs/mpc-1.2.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/mpfr-4.1.0_p13-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/nettle-3.7.3:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_neon cpu_flags_x86_aes -cpu_flags_x86_sha -doc gmp -static-libs -test
dev-libs/npth-1.6-r1:0
dev-libs/nspr-4.33:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug
dev-libs/openssl-1.1.1m:0/1.1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -rfc3779 -sctp -sslv3 -static-libs -test -tls-compression -tls-heartbeat -vanilla
dev-libs/popt-1.18:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs
dev-perl/Devel-CheckLib-1.140.0:0 -test
dev-perl/Encode-EUCJPASCII-0.30.0-r1:0 -test
dev-perl/Encode-HanExtra-0.230.0-r3:0
dev-perl/Encode-Locale-1.50.0-r1:0 -test
dev-perl/File-Listing-6.140.0:0 -test
dev-perl/HTML-Parser-3.760.0:0 -test
dev-perl/HTML-Tagset-3.200.0-r2:0
dev-perl/HTTP-Cookies-6.100.0:0 -test
dev-perl/HTTP-Date-6.50.0:0
dev-perl/HTTP-Message-6.330.0:0 -test -test
dev-perl/HTTP-Negotiate-6.10.0-r2:0 -test
dev-perl/IO-HTML-1.4.0:0 -test
dev-perl/IO-Socket-INET6-2.720.0-r2:0 -test
dev-perl/IO-Socket-SSL-2.74.0:0 -examples -idn -test
dev-perl/libwww-perl-6.600.0-r1:0 ssl -test
dev-perl/Locale-gettext-1.70.0-r1:0 -test
dev-perl/LWP-MediaTypes-6.40.0:0 -test
dev-perl/LWP-Protocol-https-6.100.0:0 -test
dev-perl/MIME-Charset-1.12.2-r1:0 l10n_ja l10n_zh -test
dev-perl/Module-Build-0.423.100:0 -test
dev-perl/Mozilla-CA-20999999-r1:0 -test
dev-perl/Net-HTTP-6.210.0:0 -minimal -test
dev-perl/Net-SSLeay-1.900.0:0 -examples -examples -minimal -test
dev-perl/Pod-Parser-1.630.0-r1:0 -test
dev-perl/SGMLSpm-1.1-r2:0 -test
dev-perl/Socket6-0.290.0:0 -test
dev-perl/TermReadKey-2.380.0:0 -examples -test
dev-perl/Text-CharWidth-0.40.0-r2:0 -test
dev-perl/Text-WrapI18N-0.60.0-r2:0 -test
dev-perl/TimeDate-2.330.0-r1:0 -test
dev-perl/Try-Tiny-0.310.0:0 -minimal -test
dev-perl/Unicode-LineBreak-2019.1.0:0
dev-perl/URI-5.100.0:0 -test
dev-perl/WWW-RobotRules-6.20.0-r2:0 -test
dev-perl/XML-Parser-2.460.0-r2:0
dev-perl/YAML-Tiny-1.730.0-r1:0 -minimal -test
dev-python/appdirs-1.4.4-r2:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9
dev-python/certifi-3021.3.16-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/charset_normalizer-2.0.10:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/flit_core-3.6.0-r2:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/idna-3.3:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9
dev-python/installer-0.4.0_p20220124:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/jinja-3.0.3:0 -doc -examples python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/markupsafe-2.0.1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/more-itertools-8.12.0-r1:0 -doc python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/ordered-set-4.1.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/packaging-21.3-r2:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/pyparsing-3.0.7-r1:0 -examples python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/pypy3-7.3.7-r1:0/pypy38-pp73 bzip2 gdbm jit ncurses -sqlite -test -tk
dev-python/pypy3-exe-7.3.7:7.3.7 bzip2 -cpu_flags_x86_sse2 jit -low-memory ncurses
dev-python/PySocks-1.7.1-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9
dev-python/requests-2.27.1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -socks5 -test
dev-python/setuptools-60.5.0-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/setuptools_scm-6.4.1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/tomli-2.0.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/urllib3-1.26.8:0 -brotli python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-python/wheel-0.37.1-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-util/boost-build-1.78.0-r1:0 -examples
dev-util/cmake-3.22.2:0 -doc -emacs ncurses -qt5 -test -test
dev-util/desktop-file-utils-0.26-r1:0 -emacs
dev-util/glib-utils-2.70.3:0 -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9
dev-util/gperf-3.1:0
dev-util/gtk-doc-am-1.33.2:0
dev-util/intltool-0.51.0-r2:0
dev-util/meson-0.60.3:0 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test
dev-util/meson-format-array-0:0 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9
dev-util/ninja-1.10.2-r1:0 -doc -emacs -test -vim-syntax
dev-util/pkgconf-1.8.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -test
dev-util/re2c-2.2:0 -debug -test
dev-vcs/git-2.35.0:0 blksha1 -cgi curl -cvs -doc -emacs -gnome-keyring gpg -highlight iconv -mediawiki -mediawiki-experimental nls pcre -perforce -perl -ppcsha1 -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 -subversion -test threads -tk webdav -xinetd
media-fonts/liberation-fonts-2.1.3:0 -X -X -fontforge
media-gfx/graphite2-1.3.14_p20210810:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test
media-libs/fontconfig-2.13.1-r2:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs
media-libs/freetype-2.11.1:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting -debug -doc -fontforge harfbuzz -infinality png -static-libs -utils
media-libs/harfbuzz-3.2.0:0/3.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cairo -debug -doc -experimental glib graphite -icu introspection -test truetype
media-libs/libpng-1.6.37-r2:0/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -apng -cpu_flags_arm_neon cpu_flags_x86_sse -static-libs
net-dns/libidn2-2.3.2:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig
net-firewall/iptables-1.8.7-r1:0/1.8.3 -conntrack ipv6 -netlink -nftables -pcap split-usr -static-libs
net-libs/gnutls-3.7.3:0/30 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cxx -dane -doc -examples -guile idn nls openssl -pkcs11 seccomp -sslv2 -sslv3 -static-libs -test -test-full tls-heartbeat -tools -valgrind
net-libs/libmnl-1.0.4:0/0.2.0 -examples split-usr -static-libs
net-libs/libnsl-2.0.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
net-libs/libtirpc-1.3.2:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 ipv6 -kerberos split-usr -static-libs
net-libs/nghttp2-1.46.0:0/1.14 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx -debug -hpack-tools -jemalloc -static-libs -test threads -utils -xml
net-misc/curl-7.81.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -adns -alt-svc -brotli -curl_ssl_gnutls -curl_ssl_mbedtls -curl_ssl_nss curl_ssl_openssl ftp -gnutls -gopher -hsts http2 -idn imap ipv6 -kerberos -ldap -mbedtls -nghttp3 -nss openssl pop3 progress-meter -quiche -rtmp -samba smtp -ssh ssl -sslv3 -static-libs -telnet -test tftp -threads -zstd
net-misc/iputils-20210722-r1:0 arping -caps -clockdiff -doc filecaps -gcrypt -idn ipv6 -nettle nls -rarpd -rdisc ssl -static -test -tftpd -tracepath -traceroute6
net-misc/netifrc-0.7.3:0
net-misc/openssh-8.8_p1-r4:0 -X -X509 -abi_mips_n32 -audit -debug -hpn -kerberos -ldns -libedit -livecd pam pie scp -sctp -security-key -selinux ssl -static -test -xmss
net-misc/rsync-3.2.3-r5:0 acl -examples iconv ipv6 -lz4 ssl -stunnel -system-zlib xattr -xxhash -zstd
net-misc/wget-1.21.2:0 -cookie-check -debug -gnutls -idn ipv6 -metalink nls -ntlm pcre ssl -static -test -uuid zlib
perl-core/CPAN-2.290.0-r1:0
perl-core/Encode-3.120.0:0
perl-core/File-Temp-0.231.100:0
perl-core/Scalar-List-Utils-1.560.0:0
sci-biology/augustus-3.4.0:0 -doc
sci-biology/bamtools-2.5.2:0/2.5.2
sci-libs/amd-2.4.6-r1:0 -doc fortran
sci-libs/btf-1.2.6:0
sci-libs/camd-2.4.6-r1:0 -doc
sci-libs/ccolamd-2.9.6:0
sci-libs/cholmod-3.0.13:0 -cuda -doc lapack matrixops modify partition
sci-libs/colamd-2.9.6:0
sci-libs/cxsparse-3.2.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
sci-libs/gsl-2.7.1-r1:0/27 -cblas-external deprecated -static-libs
sci-libs/htslib-1.13:0/3 bzip2 -curl lzma
sci-libs/klu-1.3.9-r2:0 -doc
sci-libs/lapack-3.10.0:0 -deprecated -doc -eselect-ldso -lapacke -test
sci-libs/ldl-2.2.6:0 -doc -static-libs
sci-libs/metis-5.1.0-r5:0 -doc -double-precision -examples -int64 openmp
sci-libs/spqr-2.0.9-r2:0 -doc -partition -tbb
sci-libs/suitesparse-5.4.0:0 -cuda -doc -lapack -partition -tbb
sci-libs/suitesparseconfig-5.4.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
sci-libs/umfpack-5.7.9:0 cholmod -doc
sci-mathematics/lpsolve-5.5.2.0:0 -static-libs
sec-keys/openpgp-keys-gentoo-release-20220101:0 -test
sys-apps/acl-2.3.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls split-usr -static-libs
sys-apps/attr-2.5.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls split-usr -static-libs
sys-apps/baselayout-2.8:0 -build split-usr
sys-apps/coreutils-9.0-r1:0 acl -caps -gmp -hostname -kill -multicall nls -selinux split-usr -static -test -vanilla xattr
sys-apps/dbus-1.12.20-r4:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc elogind -selinux -static-libs -systemd -test -test
sys-apps/debianutils-5.5:0 installkernel -static
sys-apps/diffutils-3.8:0 nls -static
sys-apps/file-5.41:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs zlib
sys-apps/findutils-4.8.0-r1:0 nls -selinux -static -test
sys-apps/gawk-5.1.1-r1:0 -mpfr nls readline
sys-apps/gentoo-functions-0.15:0
sys-apps/grep-3.7:0 nls pcre -static
sys-apps/groff-1.22.4:0 -X -examples -uchardet
sys-apps/help2man-1.48.5:0 nls
sys-apps/install-xattr-0.8:0
sys-apps/iproute2-5.16.0:0 -atm -berkdb -bpf -caps -elf iptables ipv6 -libbsd -minimal -selinux
sys-apps/kbd-2.4.0:0 nls pam -test
sys-apps/kmod-29:0 -debug -doc lzma -pkcs7 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs tools zlib -zstd
sys-apps/less-590:0 pcre unicode
sys-apps/man-db-2.9.4-r1:0 -berkdb gdbm manpager nls seccomp -selinux -static-libs zlib
sys-apps/man-pages-5.13:0 l10n_de l10n_es l10n_fr l10n_it l10n_ja l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_zh-CN
sys-apps/man-pages-posix-2017a:0
sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static
sys-apps/openrc-0.44.10:0 -audit -bash -debug ncurses netifrc -newnet pam -selinux -sysv-utils unicode
sys-apps/portage-3.0.30-r1:0 -apidoc -build -doc -gentoo-dev ipc native-extensions python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 rsync-verify -selinux -test xattr
sys-apps/sandbox-2.29:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 nnp
sys-apps/sed-4.8:0 acl nls -selinux -static
sys-apps/shadow-4.11.1:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su xattr
sys-apps/systemd-tmpfiles-249.9:0 -selinux -test
sys-apps/sysvinit-3.01:0 -ibm -selinux -static
sys-apps/texinfo-6.8:0 nls standalone -static
sys-apps/util-linux-2.37.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses nls pam -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode
sys-apps/which-2.21:0
sys-auth/elogind-246.10-r2:0 acl -audit cgroup-hybrid -debug -doc pam policykit -selinux
sys-auth/pambase-20211218-r1:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt
sys-auth/passwdqc-2.0.2-r1:0
sys-auth/polkit-0.120-r2:0 -examples -gtk introspection -kde pam -selinux -systemd -test
sys-devel/autoconf-2.71-r1:2.71 -emacs
sys-devel/autoconf-2.13-r1:2.1
sys-devel/autoconf-archive-2021.02.19-r1:0
sys-devel/autoconf-wrapper-15:0
sys-devel/automake-1.16.5:1.16 -test
sys-devel/automake-wrapper-11:0
sys-devel/binutils-2.37_p1-r2:2.37 -cet -default-gold -doc gold -multitarget nls -pgo plugins -static-libs -test -vanilla
sys-devel/binutils-config-5.4:0 -native-symlinks
sys-devel/bison-3.8.2:0 -examples nls -static -test
sys-devel/flex-2.6.4-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test
sys-devel/gcc-11.2.1_p20220115:11 -ada -cet -custom-cflags cxx -d -debug -doc -fixed-point fortran -go graphite -hardened -jit -libssp lto multilib nls nptl -objc -objc++ -objc-gc openmp -pch -pgo pie sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd
sys-devel/gcc-config-2.5-r1:0 cc-wrappers -native-symlinks
sys-devel/gettext-0.21-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -cvs cxx -doc -emacs -git -java -java ncurses nls openmp -static-libs
sys-devel/gnuconfig-20210107:0
sys-devel/libtool-2.4.6-r6:2 -vanilla
sys-devel/llvm-13.0.0:13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -doc -exegesis gold -libedit libffi -llvm_targets_AArch64 llvm_targets_AMDGPU -llvm_targets_ARC -llvm_targets_ARM -llvm_targets_AVR llvm_targets_BPF -llvm_targets_CSKY -llvm_targets_Hexagon -llvm_targets_Lanai -llvm_targets_M68k -llvm_targets_MSP430 -llvm_targets_Mips llvm_targets_NVPTX -llvm_targets_PowerPC -llvm_targets_RISCV -llvm_targets_Sparc -llvm_targets_SystemZ -llvm_targets_VE -llvm_targets_WebAssembly llvm_targets_X86 -llvm_targets_XCore ncurses -test -xar -xml -z3
sys-devel/llvm-common-13.0.0:0
sys-devel/llvmgold-13-r1:0
sys-devel/m4-1.4.19:0 -examples nls
sys-devel/make-4.3:0 -guile nls -static
sys-devel/patch-2.7.6-r4:0 -static -test xattr
sys-fs/e2fsprogs-1.46.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto nls split-usr -static-libs threads tools
sys-fs/udev-249.9:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl kmod -selinux split-usr -test
sys-fs/udev-init-scripts-35:0
sys-kernel/installkernel-gentoo-4:0 -grub
sys-kernel/linux-headers-5.16:0 -headers-only
sys-libs/binutils-libs-2.37_p1-r2:0/2.37 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs
sys-libs/gdbm-1.22:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs
sys-libs/glibc-2.34-r7:2.2 -audit -caps -cet clone3 -compile-locales -crypt -custom-cflags -doc -gd -headers-only multiarch multilib -multilib-bootstrap -nscd -profile -selinux ssp static-libs -static-pie -suid -systemd -systemtap -test -vanilla
sys-libs/libcap-2.62:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools
sys-libs/libseccomp-2.5.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test
sys-libs/libxcrypt-4.4.27:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 compat split-usr -static-libs system -test
sys-libs/ncurses-6.3_p20211106:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr -static-libs -test tinfo -trace
sys-libs/pam-1.5.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug filecaps -nis -selinux
sys-libs/readline-8.1_p2:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils
sys-libs/timezone-data-2021e:0 -leaps-timezone nls -zic-slim
sys-libs/zlib-1.2.11-r4:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs
sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode
sys-process/psmisc-23.4-r1:0 -X ipv6 nls -selinux
virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
virtual/awk-1:0
virtual/blas-3.8:0 -eselect-ldso
virtual/dev-manager-0-r2:0
virtual/editor-0-r3:0
virtual/fortran-0:0 openmp
virtual/lapack-3.10:0 -eselect-ldso
virtual/libc-1-r1:0
virtual/libcrypt-2:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
virtual/libelf-3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/libudev-232-r5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd
virtual/man-0-r4:0
virtual/os-headers-0-r2:0
virtual/package-manager-1:0
virtual/pager-0:0
virtual/perl-Carp-1.520.0-r1:0
virtual/perl-Compress-Raw-Bzip2-2.101.0:0
virtual/perl-Compress-Raw-Zlib-2.101.0:0
virtual/perl-CPAN-2.290.0:0
virtual/perl-CPAN-Meta-2.150.10-r5:0
virtual/perl-CPAN-Meta-Requirements-2.140.0-r7:0
virtual/perl-CPAN-Meta-YAML-0.18.0-r7:0
virtual/perl-Data-Dumper-2.179.0:0
virtual/perl-Digest-MD5-2.580.0:0
virtual/perl-Encode-3.120.0:0
virtual/perl-Exporter-5.760.0:0
virtual/perl-ExtUtils-CBuilder-0.280.236:0
virtual/perl-ExtUtils-Install-2.200.0:0
virtual/perl-ExtUtils-MakeMaker-7.620.0:0
virtual/perl-ExtUtils-Manifest-1.730.0:0
virtual/perl-ExtUtils-ParseXS-3.430.0:0
virtual/perl-File-Spec-3.800.0:0
virtual/perl-File-Temp-0.231.100:0
virtual/perl-Getopt-Long-2.520.0:0
virtual/perl-IO-1.460.0:0
virtual/perl-IO-Compress-2.102.0:0
virtual/perl-IO-Socket-IP-0.410.0:0
virtual/perl-JSON-PP-4.60.0:0
virtual/perl-libnet-3.130.0:0 ssl
virtual/perl-MIME-Base64-3.160.0:0
virtual/perl-Module-Metadata-1.0.37-r1:0
virtual/perl-parent-0.238.0-r1:0
virtual/perl-Parse-CPAN-Meta-2.150.10-r5:0
virtual/perl-Perl-OSType-1.10.0-r5:0
virtual/perl-podlators-4.140.0-r2:0
virtual/perl-Scalar-List-Utils-1.560.0:0
virtual/perl-Test-Harness-3.430.0:0
virtual/perl-Text-ParseWords-3.300.0-r8:0
virtual/perl-Time-Local-1.300.0:0
virtual/perl-version-0.992.800:0
virtual/perl-XSLoader-0.300.0-r4:0
virtual/pkgconfig-2-r1:0
virtual/rust-1.58.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -rustfmt
virtual/service-manager-1:0
virtual/ssh-0:0 -minimal
virtual/tmpfiles-0-r1:0
virtual/ttf-fonts-1-r1:0
virtual/udev-217-r3:0
virtual/yacc-0:0
www-client/pybugz-0.13-r1:0 python_targets_python3_8 python_targets_python3_9
x11-base/xcb-proto-1.14.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9
x11-base/xorg-proto-2021.5:0 -test
x11-libs/cairo-1.16.0-r5:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only glib -opengl -static-libs svg -utils -valgrind
x11-libs/libX11-1.7.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 -test
x11-libs/libXau-1.0.9-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
x11-libs/libxcb-1.14:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb
x11-libs/libXdmcp-1.1.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
x11-libs/libXext-1.3.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
x11-libs/libXrender-0.9.10-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
x11-libs/pixman-0.40.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs
x11-libs/xtrans-1.4.0:0 -doc
x11-misc/compose-tables-1.7.3:0
x11-misc/shared-mime-info-2.1:0


#######################
# build.log           #
#######################
>>> Unpacking source...
>>> Unpacking augustus-3.4.0.tar.gz to /var/tmp/portage/sci-biology/augustus-3.4.0/work
>>> Source unpacked in /var/tmp/portage/sci-biology/augustus-3.4.0/work
>>> Preparing source in /var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0 ...
make -j40 
mkdir -p bin
cd src && make
make[1]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/src'
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o genbank.o genbank.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o properties.o properties.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_profile.o pp_profile.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_hitseq.o pp_hitseq.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_scoring.o pp_scoring.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o statemodel.o statemodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o namgene.o namgene.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o types.o types.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o gene.o gene.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o evaluation.o evaluation.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o motif.o motif.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o geneticcode.o geneticcode.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o hints.o hints.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o extrinsicinfo.o extrinsicinfo.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o projectio.o projectio.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o intronmodel.o intronmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exonmodel.o exonmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o igenicmodel.o igenicmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o utrmodel.o utrmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o merkmal.o merkmal.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o vitmatrix.o vitmatrix.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o lldouble.o lldouble.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o mea.o mea.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o graph.o graph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o meaPath.o meaPath.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exoncand.o exoncand.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o randseqaccess.o randseqaccess.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o fasta.o fasta.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o ncmodel.o ncmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o parser/parse.o parser/parse.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o scanner/lex.o scanner/lex.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o genomicMSA.o genomicMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o geneMSA.o geneMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o contTimeMC.o contTimeMC.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o codonevo.o codonevo.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o compgenepred.o compgenepred.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o phylotree.o phylotree.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o orthograph.o orthograph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o orthoexon.o orthoexon.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o alignment.o alignment.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o speciesgraph.o speciesgraph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o codonMSA.o codonMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
In file included from /usr/include/string.h:519,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/include/g++-v11/cstring:42,
                 from /usr/include/boost/archive/basic_archive.hpp:18,
                 from /usr/include/boost/archive/detail/basic_oarchive.hpp:24,
                 from /usr/include/boost/archive/detail/common_oarchive.hpp:21,
                 from /usr/include/boost/archive/basic_text_oarchive.hpp:29,
                 from /usr/include/boost/archive/text_oarchive.hpp:31,
                 from ../include/types.hh:16,
                 from ../include/hints.hh:12,
                 from hints.cc:10:
In function ‘char* strncpy(char*, const char*, size_t)’,
    inlined from ‘std::istream& operator>>(std::istream&, Feature&)’ at hints.cc:82:9:
/usr/include/bits/string_fortified.h:95:34: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o train_logReg_param.o train_logReg_param.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o tokenizer.o tokenizer.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o sqliteDB.o sqliteDB.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o commontrain.o commontrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o igenictrain.o igenictrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o introntrain.o introntrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exontrain.o exontrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o utrtrain.o utrtrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o dummy.o dummy.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o prepareAlign pp_prepare_align.cc
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
echo "-Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE" > cxxflags
cp prepareAlign ../bin/
x86_64-pc-linux-gnu-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o pp_simScore pp_simscore.cc fasta.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++  -lboost_iostreams -lgsl -lgslcblas  -llpsolve55 -lcolamd -ldl  -lboost_serialization  -lmysqlclient -lmysqlpp   -lsqlite3
x86_64-pc-linux-gnu-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o load2db load2db.cc fasta.o hints.o types.o properties.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++  -lboost_iostreams -lgsl -lgslcblas  -llpsolve55 -lcolamd -ldl  -lboost_serialization  -lmysqlclient -lmysqlpp   -lsqlite3
x86_64-pc-linux-gnu-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o load2sqlitedb load2sqlitedb.cc fasta.o hints.o types.o properties.o lldouble.o sqliteDB.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++  -lboost_iostreams -lgsl -lgslcblas  -llpsolve55 -lcolamd -ldl  -lboost_serialization  -lmysqlclient -lmysqlpp   -lsqlite3
x86_64-pc-linux-gnu-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++  -lboost_iostreams -lgsl -lgslcblas  -llpsolve55 -lcolamd -ldl  -lboost_serialization  -lmysqlclient -lmysqlpp   -lsqlite3
cp load2sqlitedb ../bin/
cp load2db ../bin/
cp fastBlockSearch ../bin/
cp pp_simScore ../bin/
x86_64-pc-linux-gnu-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++  -lboost_iostreams -lgsl -lgslcblas  -llpsolve55 -lcolamd -ldl  -lboost_serialization  -lmysqlclient -lmysqlpp   -lsqlite3
x86_64-pc-linux-gnu-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++  -lboost_iostreams -lgsl -lgslcblas  -llpsolve55 -lcolamd -ldl  -lboost_serialization  -lmysqlclient -lmysqlpp   -lsqlite3
x86_64-pc-linux-gnu-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o getSeq getSeq.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++  -lboost_iostreams -lgsl -lgslcblas  -llpsolve55 -lcolamd -ldl  -lboost_serialization  -lmysqlclient -lmysqlpp   -lsqlite3
cp getSeq ../bin/
cp etraining ../bin/
cp augustus ../bin/
make[1]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/src'
cd auxprogs && make
make[1]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs'
cd aln2wig; make;
make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/aln2wig'
x86_64-pc-linux-gnu-gcc  -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c aln2wig.c
In file included from /usr/include/string.h:519,
                 from aln2wig.c:15:
In function ‘strncpy’,
    inlined from ‘main’ at aln2wig.c:454:6:
/usr/include/bits/string_fortified.h:95:10: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘main’ at aln2wig.c:460:6:
/usr/include/bits/string_fortified.h:95:10: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘main’ at aln2wig.c:327:6:
/usr/include/bits/string_fortified.h:95:10: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘main’ at aln2wig.c:334:6:
/usr/include/bits/string_fortified.h:95:10: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o aln2wig aln2wig.o
mkdir -p ../../bin
cp aln2wig ../../bin
make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/aln2wig'
cd bam2hints; make;
make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/bam2hints'
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -O2   -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -O2   -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools 
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -O2   -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -O2   -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o bam2hints bam2hints.o -lbamtools -lz
mkdir -p ../../bin
cp bam2hints ../../bin
make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/bam2hints'
cd compileSpliceCands; make;
make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/compileSpliceCands'
x86_64-pc-linux-gnu-gcc -Wall -pedantic -ansi -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c compileSpliceCands.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0   -c -o list.o list.c
In file included from /usr/include/string.h:519,
                 from compileSpliceCands.c:12:
In function ‘strncat’,
    inlined from ‘getChromosome’ at compileSpliceCands.c:216:2:
/usr/include/bits/string_fortified.h:135:10: warning: â€-Wstringop-overflow=][]]
  135 |   return __builtin___strncat_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
compileSpliceCands.c: In function ‘getChromosome’:
compileSpliceCands.c:216:9: note: length computed here
  216 |         strncat(checkstring,chromosomename,strlen(chromosomename));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:519,
                 from compileSpliceCands.c:12:
In function ‘strncpy’,
    inlined from ‘parseLine’ at compileSpliceCands.c:292:2:
/usr/include/bits/string_fortified.h:95:10: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
compileSpliceCands.c: In function ‘parseList’:
compileSpliceCands.c:350:85: warning: â€-Wmaybe-uninitialized][]]
  350 |                                 findPossibleSpliceSites(left->name,actualChromosome,left->startPos,left->endPos,right->startPos,right->endPos,left->strand,right->strand);
      |                                                         ~~~~^~~~~~

compileSpliceCands.c: In function ‘main’:
compileSpliceCands.c:563:17: warning: â€-Wmaybe-uninitialized][]]
  563 |                 parseList(&L,actualChromosome,chromosomeLength,oldname,maxSpliceSiteDiff,threshold,maxIntronLength);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0	 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o compileSpliceCands compileSpliceCands.o list.o
cp compileSpliceCands ../../bin/compileSpliceCands
make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/compileSpliceCands'
cd filterBam; make;
make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/filterBam'
(cd src;make)
make[3]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/filterBam/src'
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c filterBam.cc -o filterBam.o -I/usr/include/bamtools -Iheaders -I./bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c functions/MatePairs.cc -o MatePairs.o -I/usr/include/bamtools -Iheaders -I./bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c functions/getReferenceName.cc -o getReferenceName.o -I/usr/include/bamtools -Iheaders -I./bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c functions/initOptions.cc -o initOptions.o -I/usr/include/bamtools -Iheaders -I./bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c functions/SingleAlignment.cc -o SingleAlignment.o -I/usr/include/bamtools -Iheaders -I./bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c functions/printElapsedTime.cc -o printElapsedTime.o -I/usr/include/bamtools -Iheaders -I./bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c functions/sumMandIOperations.cc -o sumMandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c functions/sumDandIOperations.cc -o sumDandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -c functions/PairednessCoverage.cc -o PairednessCoverage.o -I/usr/include/bamtools -Iheaders -I./bamtools
filterBam compiled with BAMTOOLS=/usr/include/bamtools
x86_64-pc-linux-gnu-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o -o filterBam -lbamtools -lz
mkdir -p ../../../bin
mv filterBam ../../../bin/filterBam
make[3]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/filterBam/src'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/filterBam'
cd homGeneMapping; make;
make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/homGeneMapping'
(cd src; make)
make[3]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/homGeneMapping/src'
x86_64-pc-linux-gnu-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o gene.o gene.cc -I../include
x86_64-pc-linux-gnu-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o genome.o genome.cc -I../include
x86_64-pc-linux-gnu-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o sqliteDB.o sqliteDB.cc -I../include
x86_64-pc-linux-gnu-g++ -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o homGeneMapping main.cc gene.o genome.o sqliteDB.o -I../include -lsqlite3 
mkdir -p ../../../bin/
cp homGeneMapping ../../../bin/homGeneMapping
make[3]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/homGeneMapping/src'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/homGeneMapping'
cd joingenes; make;
make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/joingenes'
x86_64-pc-linux-gnu-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x  joingenes.cpp
x86_64-pc-linux-gnu-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x  jg_transcript.cpp
x86_64-pc-linux-gnu-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x  jg_ios.cpp
In file included from /usr/include/string.h:519,
                 from jg_transcript.h:5,
                 from jg_ios.cpp:1:
In function ‘char* strncpy(char*, const char*, size_t)’,
    inlined from ‘void load(std::unordered_map<std::__cxx11::basic_string<char>, Gene*>&, std::string&, int&, std::unordered_map<std::__cxx11::basic_string<char>, bool>&, Properties&)’ at jg_ios.cpp:251:14:
/usr/include/bits/string_fortified.h:95:34: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘char* strncpy(char*, const char*, size_t)’,
    inlined from ‘void load(std::unordered_map<std::__cxx11::basic_string<char>, Gene*>&, std::string&, int&, std::unordered_map<std::__cxx11::basic_string<char>, bool>&, Properties&)’ at jg_ios.cpp:79:14:
/usr/include/bits/string_fortified.h:95:34: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘char* strncpy(char*, const char*, size_t)’,
    inlined from ‘void load(std::unordered_map<std::__cxx11::basic_string<char>, Gene*>&, std::string&, int&, std::unordered_map<std::__cxx11::basic_string<char>, bool>&, Properties&)’ at jg_ios.cpp:148:9:
/usr/include/bits/string_fortified.h:95:34: warning: â€-Wstringop-truncation][]]
   95 |   return __builtin___strncpy_chk (__dest, __src, __len,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
   96 |                                   __glibc_objsize (__dest));
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 joingenes.o jg_transcript.o jg_ios.o -o joingenes
mkdir -p ../../bin/
cp joingenes ../../bin/
make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/joingenes'
cd utrrnaseq/Debug; make all;
make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/utrrnaseq/Debug'
Building file: ../src/Coord_Transform.cpp
Building file: ../src/Compute_UTRs.cpp
Building file: ../src/Splice_Sites.cpp
Building file: ../src/Genomic_Data.cpp
Invoking: GCC C++ Compiler
Invoking: GCC C++ Compiler
g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Compute_UTRs.d" -MT"src/Compute_UTRs.o" -o "src/Compute_UTRs.o" "../src/Compute_UTRs.cpp"
g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Coord_Transform.d" -MT"src/Coord_Transform.o" -o "src/Coord_Transform.o" "../src/Coord_Transform.cpp"
Invoking: GCC C++ Compiler
Building file: ../src/Supporting_Methods.cpp
g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Genomic_Data.d" -MT"src/Genomic_Data.o" -o "src/Genomic_Data.o" "../src/Genomic_Data.cpp"
Invoking: GCC C++ Compiler
Building file: ../src/Test.cpp
g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Splice_Sites.d" -MT"src/Splice_Sites.o" -o "src/Splice_Sites.o" "../src/Splice_Sites.cpp"
/bin/sh: line 1: g++: command not found
/bin/sh: line 1: g++: command not found
make[2]: *** [src/subdir.mk:40: src/Compute_UTRs.o] Error 127
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [src/subdir.mk:40: src/Coord_Transform.o] Error 127
Invoking: GCC C++ Compiler
g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Supporting_Methods.d" -MT"src/Supporting_Methods.o" -o "src/Supporting_Methods.o" "../src/Supporting_Methods.cpp"
Invoking: GCC C++ Compiler
/bin/sh: line 1: g++: command not found
g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Test.d" -MT"src/Test.o" -o "src/Test.o" "../src/Test.cpp"
make[2]: *** [src/subdir.mk:41: src/Splice_Sites.o] Error 127
/bin/sh: line 1: g++: command not found
/bin/sh: line 1: g++: command not found
make[2]: *** [src/subdir.mk:41: src/Supporting_Methods.o] Error 127
make[2]: *** [src/subdir.mk:41: src/Genomic_Data.o] Error 127
/bin/sh: line 1: g++: command not found
make[2]: *** [src/subdir.mk:41: src/Test.o] Error 127
make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs/utrrnaseq/Debug'
make[1]: *** [Makefile:10: all] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0/auxprogs'
make: *** [Makefile:9: all] Error 2
 * ERROR: sci-biology/augustus-3.4.0::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/augustus-3.4.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/augustus-3.4.0::gentoo'`.
 * The complete build log is located at '/var/log/emerge-log/build/sci-biology/augustus-3.4.0:20220127-192629.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/augustus-3.4.0/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/augustus-3.4.0/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0'
 * S: '/var/tmp/portage/sci-biology/augustus-3.4.0/work/Augustus-3.4.0'