sci-chemistry:gromacs-2020.4:20210812-113435.log

sci-chemistry:gromacs-2020.4:20210812-113435.log (text/plain), 2.83 KB, created by Toralf Förster on 2021-08-12 13:01:45 UTC

 * Package:    sci-chemistry/gromacs-2020.4
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:        X abi_x86_64 amd64 cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 custom-cflags doc elibc_glibc fftw gmxapi gmxapi-legacy hwloc kernel_linux lmfit offensive openmp python_single_target_python3_9 single-precision threads tng userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using python3.9 to build
>>> Unpacking source...
>>> Unpacking gromacs-2020.4.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-2020.4/work
>>> Unpacking manual-2020.4.pdf to /var/tmp/portage/sci-chemistry/gromacs-2020.4/work
unpack manual-2020.4.pdf: file format not recognized. Ignoring.
>>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-2020.4/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-2020.4/work/gromacs-2020.4 ...
 * Applying gromacs-2020-pytest.patch ...
patching file python_packaging/src/CMakeLists.txt
Hunk #1 FAILED at 1.
Hunk #2 succeeded at 209 (offset -43 lines).
1 out of 2 hunks FAILED -- saving rejects to file python_packaging/src/CMakeLists.txt.rej
 [ !! ]
 * ERROR: sci-chemistry/gromacs-2020.4::gentoo failed (prepare phase):
 *   patch -p1  failed with /var/tmp/portage/sci-chemistry/gromacs-2020.4/files/gromacs-2020-pytest.patch
 * 
 * Call stack:
 *               ebuild.sh, line  127:  Called src_prepare
 *             environment, line 3951:  Called cmake_src_prepare
 *             environment, line 1647:  Called default_src_prepare
 *      phase-functions.sh, line  923:  Called __eapi6_src_prepare
 *             environment, line  348:  Called eapply '/var/tmp/portage/sci-chemistry/gromacs-2020.4/files/gromacs-2020-pytest.patch'
 *             environment, line 2327:  Called _eapply_patch '/var/tmp/portage/sci-chemistry/gromacs-2020.4/files/gromacs-2020-pytest.patch'
 *             environment, line 2265:  Called __helpers_die 'patch -p1  failed with /var/tmp/portage/sci-chemistry/gromacs-2020.4/files/gromacs-2020-pytest.patch'
 *   isolated-functions.sh, line  112:  Called die
 * The specific snippet of code:
 *   		die "$@"
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/gromacs-2020.4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/gromacs-2020.4::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-chemistry:gromacs-2020.4:20210812-113435.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/gromacs-2020.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-2020.4/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/gromacs-2020.4/work/gromacs-2020.4'
 * S: '/var/tmp/portage/sci-chemistry/gromacs-2020.4/work/gromacs-2020.4'