* Package: sys-cluster/openmpi-2.0.1 * Repository: gentoo * Maintainer: jsbronder@gentoo.org cluster@gentoo.org * USE: abi_x86_64 amd64 cxx elibc_glibc fortran ipv6 kernel_linux userland_GNU * FEATURES: preserve-libs sandbox userpriv usersandbox * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran * * OpenMPI has an overwhelming count of configuration options. * Don't forget the EXTRA_ECONF environment variable can let you * specify configure options if you find them necessary. * >>> Unpacking source... >>> Unpacking openmpi-2.0.1.tar.bz2 to /var/tmp/portage/sys-cluster/openmpi-2.0.1/work >>> Source unpacked in /var/tmp/portage/sys-cluster/openmpi-2.0.1/work >>> Preparing source in /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1 ... * abi_x86_64.amd64: running multilib-minimal_abi_src_configure * econf: updating openmpi-2.0.1/opal/mca/pmix/pmix112/pmix/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating openmpi-2.0.1/opal/mca/pmix/pmix112/pmix/config/config.guess with /usr/share/gnuconfig/config.guess * econf: updating openmpi-2.0.1/opal/mca/event/libevent2022/libevent/config.sub with /usr/share/gnuconfig/config.sub * econf: updating openmpi-2.0.1/opal/mca/event/libevent2022/libevent/config.guess with /usr/share/gnuconfig/config.guess * econf: updating openmpi-2.0.1/ompi/mca/io/romio314/romio/confdb/config.sub with /usr/share/gnuconfig/config.sub * econf: updating openmpi-2.0.1/ompi/mca/io/romio314/romio/confdb/config.guess with /usr/share/gnuconfig/config.guess * econf: updating openmpi-2.0.1/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating openmpi-2.0.1/config/config.guess with /usr/share/gnuconfig/config.guess /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/openmpi-2.0.1 --htmldir=/usr/share/doc/openmpi-2.0.1/html --libdir=/usr/lib64 --sysconfdir=/etc/openmpi --enable-pretty-print-stacktrace --enable-orterun-prefix-by-default --with-hwloc=/usr --with-libltdl=/usr --with-libevent=/usr --enable-mpi-fortran=all --enable-mpi-cxx --without-cma --without-cuda --disable-io-romio --disable-heterogeneous --enable-ipv6 --disable-java --disable-mpi-java --disable-mpi-thread-multiple --without-verbs --without-knem --without-psm --disable-openib-control-hdr-padding --disable-openib-connectx-xrc --disable-openib-rdmacm --disable-openib-udcm --disable-openib-dynamic-sl --disable-btl-openib-failover --without-tm --without-slurm ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking whether UID '250' is supported by ustar format... yes checking whether GID '250' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking dependency style of x86_64-pc-linux-gnu-gcc... none checking whether make supports nested variables... (cached) yes *** Checking versions checking for repo version... v2.0.0-257-gee86e07 checking Open MPI version... 2.0.1 checking Open MPI release date... Sep 02, 2016 checking Open MPI repository version... v2.0.0-257-gee86e07 checking for repo version... v2.0.0-257-gee86e07 checking Open MPI Run-Time Environment version... 2.0.1 checking Open MPI Run-Time Environment release date... Sep 02, 2016 checking Open MPI Run-Time Environment repository version... v2.0.0-257-gee86e07 checking for repo version... v2.0.0-257-gee86e07 checking Open SHMEM version... 2.0.1 checking Open SHMEM release date... Sep 02, 2016 checking Open SHMEM repository version... v2.0.0-257-gee86e07 checking for repo version... v2.0.0-257-gee86e07 checking Open Portable Access Layer version... 2.0.1 checking Open Portable Access Layer release date... Sep 02, 2016 checking Open Portable Access Layer repository version... v2.0.0-257-gee86e07 checking for bootstrap Autoconf version... 2.69 checking for bootstrap Automake version... 1.15 checking for boostrap Libtool version... 2.4.6 *** Initialization, setup configure: builddir: /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1-abi_x86_64.amd64 configure: srcdir: /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1 configure: Detected VPATH build installing to directory "/usr" *** OPAL Configuration options checking if want to run code coverage... no checking if want to compile with branch probabilities... no checking if want to debug memory usage... no checking if want to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want to developer-level timing framework... no checking if want to install project-internal header files... no checking if want pretty-print stacktrace... yes checking if want pty support... yes checking if want weak symbol support... yes checking if want dlopen support... yes checking if want heterogeneous support... no checking if word-sized integers must be word-size aligned... no checking if want IPv6 support... yes checking if want package/brand string... Open MPI portage@mr-fox Distribution checking if want ident string... 2.0.1 checking if want to use an alternative checksum algo for messages... no checking maximum length of processor name... 256 checking maximum length of error string... 256 checking maximum length of object name... 64 checking maximum length of info key... 36 checking maximum length of info val... 256 checking maximum length of port name... 1024 checking maximum length of datarep string... 128 checking if want getpwuid support... yes checking __NetBSD__... no checking __FreeBSD__... no checking __OpenBSD__... no checking __DragonFly__... no checking __386BSD__... no checking __bsdi__... no checking __APPLE__... no checking __linux__... yes checking __sun__... no checking __sun... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking for struct sockaddr_in... yes checking if --with-cuda is set... not set (--with-cuda=no) checking whether CU_POINTER_ATTRIBUTE_SYNC_MEMOPS is declared... no checking whether cuPointerGetAttributes is declared... no checking if have cuda support... no *** ORTE Configuration options checking if want orterun "--prefix" behavior to be enabled by default... yes checking if want orte static ports... yes *** OMPI Configuration options checking if want compile-time warnings inside of mpi.h... yes checking if want sparse process groups... no checking if want peruse support... no checking if want Fortran MPI bindings... all (usempif08) checking if want C++ bindings... yes checking if want MPI::SEEK_SET support... yes checking if want run-time MPI parameter checking... runtime checking which 'use mpi_f08' implementation to use... regular (no subarray support) *** OSHMEM Configuration options checking if want oshmem... yes checking if want SGI/Quadrics compatibility mode... yes checking if want OSHMEM API parameter checking... always checking for on_exit... yes checking if want pshmem... yes checking if want to build OSHMEM fortran bindings... yes checking if want wrapper compiler rpath support... yes ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... (cached) yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... none needed checking for the C compiler vendor... gnu checking for ANSI C header files... (cached) yes checking if x86_64-pc-linux-gnu-gcc supports -finline-functions... yes checking if x86_64-pc-linux-gnu-gcc supports -fno-strict-aliasing... yes configure: WARNING: -fno-strict-aliasing has been added to CFLAGS checking if x86_64-pc-linux-gnu-gcc supports __builtin_expect... yes checking if x86_64-pc-linux-gnu-gcc supports __builtin_prefetch... yes checking if x86_64-pc-linux-gnu-gcc supports __builtin_clz... yes checking for C optimization flags... -DNDEBUG -march=native -O2 -pipe -finline-functions -fno-strict-aliasing checking for Interix environment... no checking for C ident string support... #ident checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for int128_t... no checking for __int128... yes checking for uint128_t... no checking for long long... yes checking for __float128... yes checking for long double... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of __float128... 16 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking size of void *... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of wchar_t... 4 checking size of pid_t... 4 checking alignment of _Bool... 1 checking alignment of int8_t... 1 checking alignment of int16_t... 2 checking alignment of int32_t... 4 checking alignment of int64_t... 8 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 8 checking alignment of long long... 8 checking alignment of float... 4 checking alignment of double... 8 checking alignment of long double... 16 checking alignment of __float128... 16 checking alignment of float _Complex... 4 checking alignment of double _Complex... 8 checking alignment of long double _Complex... 16 checking alignment of void *... 8 checking alignment of size_t... 8 checking for C bool type... no checking size of _Bool... 1 checking for weak symbol support... yes checking for macro weak symbol support... yes checking for functional offsetof macro... yes *** C++ compiler and preprocessor checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking dependency style of x86_64-pc-linux-gnu-g++... none checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking for the C++ compiler vendor... gnu checking if x86_64-pc-linux-gnu-g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... yes checking for C++ optimization flags... -DNDEBUG -march=native -O2 -pipe -finline-functions checking size of bool... 1 checking alignment of bool... 1 *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... (cached) yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes checking dependency style of x86_64-pc-linux-gnu-g++... (cached) none checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking if C++ compiler works... yes checking if x86_64-pc-linux-gnu-g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... (cached) yes checking for C++ optimization flags... -DNDEBUG -march=native -O2 -pipe -finline-functions checking size of bool... (cached) 1 checking alignment of bool... (cached) 1 checking if able to build the MPI C++ bindings... yes checking for the C++ compiler vendor... (cached) gnu checking if want C++ exception handling... no checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking for C++ ident string support... #ident checking if x86_64-pc-linux-gnu-g++ supports __builtin_expect... yes checking if x86_64-pc-linux-gnu-g++ supports __builtin_prefetch... yes checking if x86_64-pc-linux-gnu-g++ supports const_cast<> properly... yes *** Compiler characteristics checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(deprecated_argument)... yes checking for __attribute__(format)... yes checking for __attribute__(format_funcptr)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(noinline)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(noreturn_funcptr)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(visibility)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking for __attribute__(destructor)... yes checking for compiler familyid... 1 checking for compiler familyname... GNU checking for compiler version... 328704 checking for compiler version_str... 5.4.0 *** Java compiler checking Java support available... no *** Java MPI bindings checking if want Java bindings... no *** OpenSHMEM profiling checking if pshmem will be enabled... yes (weak symbols supported) *** Assembler checking dependency style of x86_64-pc-linux-gnu-gcc... none checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm checking for fgrep... /bin/grep -F checking if .proc/endp is needed... no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... objdump checking if .note.GNU-stack is needed... yes checking suffix for labels... : checking prefix for global symbol labels... checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... no checking if processor supports x86_64 16-byte compare-and-exchange... yes checking if compiler correctly handles volatile 128bits... yes checking if x86_64-pc-linux-gnu-gcc supports GCC inline assembly... yes checking if x86_64-pc-linux-gnu-gcc supports DEC inline assembly... no checking if x86_64-pc-linux-gnu-gcc supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1 checking for assembly architecture... AMD64 checking for builtin atomics... BUILTIN_NO checking for perl... perl checking for pre-built assembly file... yes (atomic-amd64-linux.s) checking for atomic assembly filename... atomic-amd64-linux.s *** Fortran compiler checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes configure: WARNING: Open MPI now ignores the F77 and FFLAGS environment variables; only the FC and FCFLAGS environment variables are used. checking whether ln -s works... yes checking if Fortran compiler works... yes checking for extra arguments to build a shared library... none needed checking for x86_64-pc-linux-gnu-gfortran warnings flags... none checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .f90 files... none checking to see if Fortran compilers need additional linker flags... none checking external symbol convention... single underscore checking if C and Fortran are link compatible... yes checking to see if Fortran compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking to see if mpifort compiler needs additional linker flags... none checking if Fortran compiler supports CHARACTER... yes checking size of Fortran CHARACTER... 1 checking for C type corresponding to CHARACTER... char checking alignment of Fortran CHARACTER... 1 checking for corresponding KIND value of CHARACTER... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... 1 checking if Fortran compiler supports LOGICAL... yes checking size of Fortran LOGICAL... 4 checking for C type corresponding to LOGICAL... int checking alignment of Fortran LOGICAL... 4 checking for corresponding KIND value of LOGICAL... C_INT checking KIND value of Fortran C_INT... 4 checking if Fortran compiler supports LOGICAL*1... yes checking size of Fortran LOGICAL*1... 1 checking for C type corresponding to LOGICAL*1... char checking alignment of Fortran LOGICAL*1... 1 checking for corresponding KIND value of LOGICAL*1... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports LOGICAL*2... yes checking size of Fortran LOGICAL*2... 2 checking for C type corresponding to LOGICAL*2... short checking alignment of Fortran LOGICAL*2... 2 checking for corresponding KIND value of LOGICAL*2... C_SHORT checking KIND value of Fortran C_SHORT... 2 checking if Fortran compiler supports LOGICAL*4... yes checking size of Fortran LOGICAL*4... 4 checking for C type corresponding to LOGICAL*4... int checking alignment of Fortran LOGICAL*4... 4 checking for corresponding KIND value of LOGICAL*4... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports LOGICAL*8... yes checking size of Fortran LOGICAL*8... 8 checking for C type corresponding to LOGICAL*8... long long checking alignment of Fortran LOGICAL*8... 8 checking for corresponding KIND value of LOGICAL*8... C_LONG_LONG checking KIND value of Fortran C_LONG_LONG... 8 checking if Fortran compiler supports INTEGER... yes checking size of Fortran INTEGER... 4 checking for C type corresponding to INTEGER... int checking alignment of Fortran INTEGER... 4 checking for corresponding KIND value of INTEGER... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports INTEGER*1... yes checking size of Fortran INTEGER*1... 1 checking for C type corresponding to INTEGER*1... char checking alignment of Fortran INTEGER*1... 1 checking for corresponding KIND value of INTEGER*1... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports INTEGER*2... yes checking size of Fortran INTEGER*2... 2 checking for C type corresponding to INTEGER*2... short checking alignment of Fortran INTEGER*2... 2 checking for corresponding KIND value of INTEGER*2... C_SHORT checking KIND value of Fortran C_SHORT... (cached) 2 checking if Fortran compiler supports INTEGER*4... yes checking size of Fortran INTEGER*4... 4 checking for C type corresponding to INTEGER*4... int checking alignment of Fortran INTEGER*4... 4 checking for corresponding KIND value of INTEGER*4... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports INTEGER*8... yes checking size of Fortran INTEGER*8... 8 checking for C type corresponding to INTEGER*8... long long checking alignment of Fortran INTEGER*8... 8 checking for corresponding KIND value of INTEGER*8... C_LONG_LONG checking KIND value of Fortran C_LONG_LONG... (cached) 8 checking if Fortran compiler supports INTEGER*16... yes checking size of Fortran INTEGER*16... 16 checking for C type corresponding to INTEGER*16... not found configure: WARNING: *** Did not find corresponding C type checking for corresponding KIND value of INTEGER*16... 0 checking KIND value of Fortran 0... 0 configure: WARNING: Compiler INTEGER*16 and mismatch; MPI datatype unsupported checking if Fortran compiler supports REAL... yes checking size of Fortran REAL... 4 checking for C type corresponding to REAL... float checking alignment of Fortran REAL... 4 checking for corresponding KIND value of REAL... C_FLOAT checking KIND value of Fortran C_FLOAT... 4 checking if Fortran compiler supports REAL*2... no checking if Fortran compiler supports REAL*4... yes checking size of Fortran REAL*4... 4 checking for C type corresponding to REAL*4... float checking alignment of Fortran REAL*4... 4 checking for corresponding KIND value of REAL*4... C_FLOAT checking KIND value of Fortran C_FLOAT... (cached) 4 checking if Fortran compiler supports REAL*8... yes checking size of Fortran REAL*8... 8 checking for C type corresponding to REAL*8... double checking alignment of Fortran REAL*8... 8 checking for corresponding KIND value of REAL*8... C_DOUBLE checking KIND value of Fortran C_DOUBLE... 8 checking if Fortran compiler supports REAL*16... yes checking size of Fortran REAL*16... 16 checking for C type corresponding to REAL*16... long double checking alignment of Fortran REAL*16... 16 checking for corresponding KIND value of REAL*16... C_LONG_DOUBLE checking KIND value of Fortran C_LONG_DOUBLE... 10 checking for C type matching bit representation of REAL*16... pending checking if long double == REAL*16... no checking if gnu compiler __float128 == REAL*16... works! checking for C type matching bit representation of REAL*16... yes checking if Fortran compiler supports DOUBLE PRECISION... yes checking size of Fortran DOUBLE PRECISION... 8 checking for C type corresponding to DOUBLE PRECISION... double checking alignment of Fortran DOUBLE PRECISION... 8 checking for corresponding KIND value of DOUBLE PRECISION... C_DOUBLE checking KIND value of Fortran C_DOUBLE... (cached) 8 checking if Fortran compiler supports COMPLEX... yes checking size of Fortran COMPLEX... 8 checking for C type corresponding to COMPLEX... float _Complex checking alignment of Fortran COMPLEX... 4 checking for corresponding KIND value of COMPLEX... C_FLOAT_COMPLEX checking KIND value of Fortran C_FLOAT_COMPLEX... 4 checking if Fortran compiler supports COMPLEX*4... no checking if Fortran compiler supports COMPLEX*8... yes checking size of Fortran COMPLEX*8... 8 checking for C type corresponding to COMPLEX*8... float _Complex checking alignment of Fortran COMPLEX*8... 4 checking for corresponding KIND value of COMPLEX*8... C_FLOAT_COMPLEX checking KIND value of Fortran C_FLOAT_COMPLEX... (cached) 4 checking if Fortran compiler supports COMPLEX*16... yes checking size of Fortran COMPLEX*16... 16 checking for C type corresponding to COMPLEX*16... double _Complex checking alignment of Fortran COMPLEX*16... 8 checking for corresponding KIND value of COMPLEX*16... C_DOUBLE_COMPLEX checking KIND value of Fortran C_DOUBLE_COMPLEX... 8 checking if Fortran compiler supports COMPLEX*32... yes checking size of Fortran COMPLEX*32... 32 checking for C type corresponding to COMPLEX*32... long double _Complex checking alignment of Fortran COMPLEX*32... 16 checking for corresponding KIND value of COMPLEX*32... C_LONG_DOUBLE_COMPLEX checking KIND value of Fortran C_LONG_DOUBLE_COMPLEX... 10 checking if Fortran compiler supports DOUBLE COMPLEX... yes checking size of Fortran DOUBLE COMPLEX... 16 checking for C type corresponding to DOUBLE COMPLEX... double _Complex checking alignment of Fortran DOUBLE COMPLEX... 8 checking for corresponding KIND value of DOUBLE COMPLEX... C_DOUBLE_COMPLEX checking KIND value of Fortran C_DOUBLE_COMPLEX... (cached) 8 checking for max Fortran MPI handle index... 2147483647 checking Fortran value for .TRUE. logical type... 1 checking for correct handling of Fortran logical arrays... yes checking max supported Fortran array rank... 7 checking for the value of MPI_STATUS_SIZE... 6 Fortran INTEGERs checking KIND value of Fortran C_INT16_T... 2 checking KIND value of Fortran C_INT32_T... 4 checking KIND value of Fortran C_INT64_T... 8 checking if building Fortran mpif.h bindings... yes checking if Fortran compiler supports INTERFACE... yes checking if Fortran compiler supports ISO_FORTRAN_ENV... yes checking if Fortran compiler supports STORAGE_SIZE for relevant types... yes checking for Fortran compiler module include flag... -I checking Fortran compiler ignore TKR syntax... not cached; checking variants checking for Fortran compiler support of TYPE(*), DIMENSION(*)... no checking for Fortran compiler support of !GCC$ ATTRIBUTES NO_ARG_CHECK... yes checking Fortran compiler ignore TKR syntax... 1:type(*), dimension(*):!GCC$ ATTRIBUTES NO_ARG_CHECK :: checking if Fortran compiler supports ISO_C_BINDING... yes checking if building Fortran 'use mpi' bindings... yes checking if Fortran compiler supports SUBROUTINE BIND(C)... yes checking if Fortran compiler supports TYPE, BIND(C)... yes checking if Fortran compiler supports TYPE(type), BIND(C, NAME="name")... yes checking if Fortran compiler supports PROCEDURE... yes checking if Fortran compiler supports USE...ONLY... yes checking if Fortran compiler supports optional arguments... yes checking if Fortran compiler supports C_FUNLOC/TS 29113... yes checking if Fortran compiler supports PRIVATE... yes checking if Fortran compiler supports PROTECTED... yes checking if Fortran compiler supports ABSTRACT... yes checking if Fortran compiler supports ASYNCHRONOUS... yes checking size of Fortran type(test_mpi_handle)... 4 checking alignment of Fortran type(test_mpi_handle)... 4 checking Fortran compiler F08 assumed rank syntax... not cached; checking checking for Fortran compiler support of TYPE(*), DIMENSION(..)... yes checking Fortran compiler F08 assumed rank syntax... yes checking which mpi_f08 implementation to build... "good" compiler, no array subsections checking if building Fortran 'use mpi_f08' bindings... yes ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking for memory.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for netinet/tcp.h... (cached) yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pty.h usability... yes checking pty.h presence... yes checking for pty.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking stropts.h usability... yes checking stropts.h presence... yes checking for stropts.h... yes checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/stat.h... (cached) yes checking sys/statfs.h usability... yes checking sys/statfs.h presence... yes checking for sys/statfs.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... no checking sys/tree.h presence... no checking for sys/tree.h... no checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking net/uio.h usability... no checking net/uio.h presence... no checking for net/uio.h... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... yes checking ulimit.h presence... yes checking for ulimit.h... yes checking for unistd.h... (cached) yes checking util.h usability... no checking util.h presence... no checking for util.h... no checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking crt_externs.h usability... no checking crt_externs.h presence... no checking for crt_externs.h... no checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking mntent.h usability... yes checking mntent.h presence... yes checking for mntent.h... yes checking paths.h usability... yes checking paths.h presence... yes checking for paths.h... yes checking ioLib.h usability... no checking ioLib.h presence... no checking for ioLib.h... no checking sockLib.h usability... no checking sockLib.h presence... no checking for sockLib.h... no checking hostLib.h usability... no checking hostLib.h presence... no checking for hostLib.h... no checking shlwapi.h usability... no checking shlwapi.h presence... no checking for shlwapi.h... no checking sys/synch.h usability... no checking sys/synch.h presence... no checking for sys/synch.h... no checking db.h usability... yes checking db.h presence... yes checking for db.h... yes checking ndbm.h usability... no checking ndbm.h presence... no checking for ndbm.h... no checking for sys/mount.h... yes checking for sys/sysctl.h... yes checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if works... yes ============================================================================ == Type tests ============================================================================ checking for socklen_t... yes checking for struct sockaddr_in... (cached) yes checking for struct sockaddr_in6... yes checking for struct sockaddr_storage... yes checking whether AF_UNSPEC is declared... yes checking whether PF_UNSPEC is declared... yes checking whether AF_INET6 is declared... yes checking whether PF_INET6 is declared... yes checking if SA_RESTART defined in signal.h... yes checking for struct sockaddr.sa_len... no checking for struct dirent.d_type... yes checking for siginfo_t.si_fd... yes checking for siginfo_t.si_band... yes checking for struct statfs.f_type... yes checking for struct statfs.f_fstypename... no checking for struct statvfs.f_basetype... no checking for struct statvfs.f_fstypename... no checking for pointer diff type... ptrdiff_t (size: 8) checking for type of MPI_Aint... ptrdiff_t (size: 8) checking for type of MPI_Count... long long (size: 8) checking for type of MPI_Offset... long long (size: 8) checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking for MPI_INTEGER_KIND... 4 checking for MPI_ADDRESS_KIND... 8 checking for MPI_COUNT_KIND... 8 checking for MPI_OFFSET_KIND... 8 checking the linker for support for the -fini option... yes ============================================================================ == Library and Function tests ============================================================================ checking for library containing openpty... -lutil checking for library containing gethostbyname... none required checking for library containing socket... none required checking for library containing sched_yield... none required checking for library containing dirname... none required checking for library containing ceil... -lm checking for library containing clock_gettime... none required checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... yes checking for isatty... yes checking for getpwuid... yes checking for fork... yes checking for waitpid... yes checking for execve... yes checking for pipe... yes checking for ptsname... yes checking for setsid... yes checking for mmap... yes checking for tcgetpgrp... yes checking for posix_memalign... yes checking for strsignal... yes checking for sysconf... yes checking for syslog... yes checking for vsyslog... yes checking for regcmp... no checking for regexec... yes checking for regfree... yes checking for _NSGetEnviron... no checking for socketpair... yes checking for strncpy_s... no checking for usleep... yes checking for mkfifo... yes checking for dbopen... no checking for dbm_open... no checking for statfs... yes checking for statvfs... yes checking for setpgid... yes checking for setenv... yes checking for __malloc_initialize_hook... yes checking for htonl define... no checking for htonl... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes ============================================================================ == System-specific tests ============================================================================ checking for _SC_NPROCESSORS_ONLN... yes checking whether byte ordering is bigendian... no checking for broken qsort... no checking if C compiler and POSIX threads work as is... no checking if C++ compiler and POSIX threads work as is... no checking if Fortran compiler and POSIX threads work as is... no checking if C compiler and POSIX threads work with -Kthread... no checking if C compiler and POSIX threads work with -kthread... no checking if C compiler and POSIX threads work with -pthread... yes checking if C++ compiler and POSIX threads work with -Kthread... no checking if C++ compiler and POSIX threads work with -kthread... no checking if C++ compiler and POSIX threads work with -pthread... yes checking if Fortran compiler and POSIX threads work with -Kthread... no checking if Fortran compiler and POSIX threads work with -kthread... no checking if Fortran compiler and POSIX threads work with -pthread... yes checking for pthread_mutexattr_setpshared... yes checking for pthread_condattr_setpshared... yes checking for PTHREAD_MUTEX_ERRORCHECK_NP... yes checking for PTHREAD_MUTEX_ERRORCHECK... yes checking for working POSIX threads package... yes checking if threads have different pids (pthreads on linux)... no checking if want MPI_THREAD_MULTIPLE support... Disabled checking whether ln -s works... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/grep -E checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flavor of ps to use... ps -A -o fname,pid,user checking if build filesystem is case sensitive... yes checking if configuring for case sensitive filesystem... yes checking whether RLIMIT_NPROC is declared... yes checking whether RLIMIT_MEMLOCK is declared... yes checking whether RLIMIT_NOFILE is declared... yes checking whether RLIMIT_FSIZE is declared... yes checking whether RLIMIT_CORE is declared... yes checking whether RLIMIT_STACK is declared... yes checking whether RLIMIT_AS is declared... yes ============================================================================ == Modular Component Architecture (MCA) setup ============================================================================ checking for subdir args... '--prefix=/usr' '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--docdir=/usr/share/doc/openmpi-2.0.1' '--htmldir=/usr/share/doc/openmpi-2.0.1/html' '--libdir=/usr/lib64' '--sysconfdir=/etc/openmpi' '--enable-pretty-print-stacktrace' '--enable-orterun-prefix-by-default' '--with-hwloc=/usr' '--with-libltdl=/usr' '--with-libevent=/usr' '--enable-mpi-fortran=all' '--enable-mpi-cxx' '--without-cma' '--without-cuda' '--disable-io-romio' '--disable-heterogeneous' '--enable-ipv6' '--disable-java' '--disable-mpi-java' '--disable-mpi-thread-multiple' '--without-verbs' '--without-knem' '--without-psm' '--disable-openib-control-hdr-padding' '--disable-openib-connectx-xrc' '--disable-openib-rdmacm' '--disable-openib-udcm' '--disable-openib-dynamic-sl' '--disable-btl-openib-failover' '--without-tm' '--without-slurm' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'CFLAGS=-march=native -O2 -pipe' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed' 'CXXFLAGS=-march=native -O2 -pipe' 'FC=x86_64-pc-linux-gnu-gfortran' 'FCFLAGS=-O2 -pipe' 'PKG_CONFIG_PATH=/usr/lib64/pkgconfig' checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking --with-verbs value... simple ok (unspecified) checking --with-verbs-libdir value... simple ok (unspecified) checking for x86_64-pc-linux-gnu-pkg-config... (cached) /usr/bin/x86_64-pc-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ==> Pre-emptively configuring the hwloc framework to satisfy dependencies. checking whether to enable hwloc PCI device support... yes (default) +++ Configuring MCA framework hwloc checking for no configure components in framework hwloc... checking for m4 configure components in framework hwloc... external, hwloc1112 --- MCA component hwloc:external (m4 configuration macro, priority 90) checking for MCA component hwloc:external compile mode... static checking --with-hwloc-libdir value... simple ok (unspecified) checking looking for external hwloc in... (/usr) looking for header without includes checking hwloc.h usability... yes checking hwloc.h presence... yes checking for hwloc.h... yes looking for library without search path checking for library containing hwloc_topology_init... -lhwloc checking if external hwloc supports XML... yes checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking if external hwloc version is 1.8 or greater... yes checking if MCA component hwloc:external can compile... yes --- MCA component hwloc:hwloc1112 (m4 configuration macro, priority 90) checking for MCA component hwloc:hwloc1112 compile mode... static checking hwloc building mode... embedded configure: hwloc builddir: /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1-abi_x86_64.amd64/opal/mca/hwloc/hwloc1112/hwloc configure: hwloc srcdir: /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1/opal/mca/hwloc/hwloc1112/hwloc configure: Detected VPATH build checking for hwloc version... 1.11.2 checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... opal/mca/hwloc/hwloc1112/hwloc/ checking for hwloc symbol prefix... hwloc_ checking size of void *... (cached) 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if x86_64-pc-linux-gnu-gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking for dirent.h... (cached) yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strncasecmp... yes checking whether function strncasecmp is declared... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking for sys/mman.h... (cached) yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... no checking for main in -lgdi32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... (cached) yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking whether getprogname is declared... no checking whether getexecname is declared... no checking whether GetModuleFileName is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking whether function sched_setaffinity is declared... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall... yes checking for KERRIGHED... no checking for lib... no checking for bash... /bin/sh checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking for malloc.h... (cached) yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... (cached) yes checking for sys/utsname.h... (cached) yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking numaif.h usability... yes checking numaif.h presence... yes checking for numaif.h... yes checking for numa_available in -lnuma... yes checking for set_mempolicy in -lnuma... yes checking for mbind in -lnuma... yes checking for migrate_pages in -lnuma... yes checking libudev.h usability... yes checking libudev.h presence... yes checking for libudev.h... yes checking for udev_device_new_from_subsystem_sysname in -ludev... yes checking for PCIACCESS... yes checking pciaccess.h usability... yes checking pciaccess.h presence... yes checking for pciaccess.h... yes checking for pci_slot_match_iterator_create... yes checking for final PCIACCESS support... yes checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic custom xml_nolibxml linux linuxpci pci x86 checking components to build as plugins... checking whether hwloc configure succeeded... yes checking for infiniband/verbs.h... (cached) no configure: WARNING: using an external hwloc; disqualifying this component checking if MCA component hwloc:hwloc1112 can compile... no checking for winning hwloc component header file... opal/mca/hwloc/external/external.h <== Pre-emptive hwloc framework configuration complete. <== We now return you to your regularly scheduled programming. checking if user requested external PMIx support()... no checking if user requested PMI support... no checking which components should be disabled... checking which components should be direct-linked into the library... checking which components should be run-time loadable... all checking which components should be static... none checking for projects containing MCA frameworks... opal, orte, ompi, oshmem *** Configuring MCA for opal checking for frameworks for opal... common, allocator, backtrace, btl, dl, event, hwloc, if, installdirs, memchecker, memcpy, memory, mpool, patcher, pmix, pstat, rcache, sec, shmem, timer +++ Configuring MCA framework common checking for no configure components in framework common... checking for m4 configure components in framework common... cuda, libfabric, sm, ugni, verbs, verbs_usnic --- MCA component common:cuda (m4 configuration macro) checking for MCA component common:cuda compile mode... dso checking if MCA component common:cuda can compile... no --- MCA component common:libfabric (m4 configuration macro) checking for MCA component common:libfabric compile mode... dso checking --with-libfabric value... simple ok (unspecified) checking --with-libfabric-libdir value... simple ok (unspecified) checking looking for libfabric in... () checking rdma/fabric.h usability... no checking rdma/fabric.h presence... no checking for rdma/fabric.h... no checking if MCA component common:libfabric can compile... no --- MCA component common:sm (m4 configuration macro) checking for MCA component common:sm compile mode... dso checking if MCA component common:sm can compile... yes --- MCA component common:ugni (m4 configuration macro) checking for MCA component common:ugni compile mode... dso checking for CRAY_UGNI... no checking if MCA component common:ugni can compile... no --- MCA component common:verbs (m4 configuration macro) checking for MCA component common:verbs compile mode... dso checking if want to add padding to the openib BTL control header... no checking if ConnectX XRC support is enabled... no checking if ConnectIB XRC support is enabled... no checking if dynamic SL is enabled... no checking if MCA component common:verbs can compile... no --- MCA component common:verbs_usnic (m4 configuration macro) checking for MCA component common:verbs_usnic compile mode... static checking if MCA component common:verbs_usnic can compile... no +++ Configuring MCA framework allocator checking for no configure components in framework allocator... basic, bucket checking for m4 configure components in framework allocator... --- MCA component allocator:basic (no configuration) checking for MCA component allocator:basic compile mode... dso checking if MCA component allocator:basic can compile... yes --- MCA component allocator:bucket (no configuration) checking for MCA component allocator:bucket compile mode... dso checking if MCA component allocator:bucket can compile... yes +++ Configuring MCA framework backtrace checking for no configure components in framework backtrace... checking for m4 configure components in framework backtrace... execinfo, none, printstack --- MCA component backtrace:execinfo (m4 configuration macro, priority 30) checking for MCA component backtrace:execinfo compile mode... static checking for execinfo.h... (cached) yes checking for library containing backtrace... none required checking if MCA component backtrace:execinfo can compile... yes --- MCA component backtrace:printstack (m4 configuration macro, priority 30) checking for MCA component backtrace:printstack compile mode... static checking ucontext.h usability... yes checking ucontext.h presence... yes checking for ucontext.h... yes checking for printstack... no checking if MCA component backtrace:printstack can compile... no --- MCA component backtrace:none (m4 configuration macro, priority 0) checking for MCA component backtrace:none compile mode... static checking if MCA component backtrace:none can compile... no +++ Configuring MCA framework btl checking for no configure components in framework btl... self checking for m4 configure components in framework btl... openib, portals4, scif, sm, smcuda, tcp, ugni, usnic, vader --- MCA component btl:self (no configuration) checking for MCA component btl:self compile mode... dso checking if MCA component btl:self can compile... yes --- MCA component btl:openib (m4 configuration macro) checking for MCA component btl:openib compile mode... dso checking if want to add padding to the openib BTL control header... no checking if ConnectX XRC support is enabled... no checking if ConnectIB XRC support is enabled... no checking if dynamic SL is enabled... no checking whether expanded verbs are available... no checking whether IBV_EXP_ATOMIC_HCA_REPLY_BE is declared... no checking whether IBV_EXP_QP_CREATE_ATOMIC_BE_REPLY is declared... no checking whether ibv_exp_create_qp is declared... no checking whether ibv_exp_query_device is declared... no checking whether IBV_EXP_QP_INIT_ATTR_ATOMICS_ARG is declared... no checking for struct ibv_exp_device_attr.ext_atom... no checking for struct ibv_exp_device_attr.exp_atomic_cap... no checking whether openib failover is enabled... no checking if MCA component btl:openib can compile... no --- MCA component btl:portals4 (m4 configuration macro) checking for MCA component btl:portals4 compile mode... dso checking --with-portals4 value... simple ok (unspecified) checking --with-portals4-libdir value... simple ok (unspecified) checking portals4.h usability... no checking portals4.h presence... no checking for portals4.h... no checking whether to enable flow control... no checking if MCA component btl:portals4 can compile... no --- MCA component btl:scif (m4 configuration macro) checking for MCA component btl:scif compile mode... dso checking --with-scif value... simple ok (unspecified) checking scif.h usability... no checking scif.h presence... no checking for scif.h... no checking if MCA component btl:scif can compile... no --- MCA component btl:sm (m4 configuration macro) checking for MCA component btl:sm compile mode... dso checking if user requested CMA build... no checking --with-knem value... simple ok (unspecified) checking if MCA component btl:sm can compile... yes --- MCA component btl:smcuda (m4 configuration macro) checking for MCA component btl:smcuda compile mode... dso checking if MCA component btl:smcuda can compile... no --- MCA component btl:tcp (m4 configuration macro) checking for MCA component btl:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component btl:tcp can compile... yes --- MCA component btl:ugni (m4 configuration macro) checking for MCA component btl:ugni compile mode... dso checking for CRAY_UGNI... no checking if MCA component btl:ugni can compile... no --- MCA component btl:usnic (m4 configuration macro) checking for MCA component btl:usnic compile mode... dso checking size of void *... (cached) 8 checking for 64 bit Linux... yes checking whether libfabric support is available... no checking if MCA component btl:usnic can compile... no --- MCA component btl:vader (m4 configuration macro) checking for MCA component btl:vader compile mode... dso checking for Cray XPMEM support... checking for CRAY_XPMEM... no checking --with-xpmem value... simple ok (unspecified) checking --with-xpmem-libdir value... simple ok (unspecified) checking xpmem.h usability... no checking xpmem.h presence... no checking for xpmem.h... no checking --with-knem value... simple ok (unspecified) checking if user requested CMA build... no checking if MCA component btl:vader can compile... yes +++ Configuring MCA framework dl checking for no configure components in framework dl... checking for m4 configure components in framework dl... dlopen, libltdl --- MCA component dl:dlopen (m4 configuration macro, priority 80) checking for MCA component dl:dlopen compile mode... static checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes looking for library without search path checking for library containing dlopen... -ldl checking if MCA component dl:dlopen can compile... yes --- MCA component dl:libltdl (m4 configuration macro, priority 50) checking for MCA component dl:libltdl compile mode... static checking --with-libltdl value... sanity check ok (/usr) checking --with-libltdl-libdir value... simple ok (unspecified) checking for libltdl dir... /usr (from --with-libltdl) checking for libltdl library dir... linker default looking for header without includes checking ltdl.h usability... yes checking ltdl.h presence... yes checking for ltdl.h... yes looking for library without search path checking for library containing lt_dlopen... -lltdl checking for lt_dladvise_init... yes checking if MCA component dl:libltdl can compile... no +++ Configuring MCA framework event checking for no configure components in framework event... checking for m4 configure components in framework event... external, libevent2022 --- MCA component event:external (m4 configuration macro, priority 90) checking for MCA component event:external compile mode... static checking --with-libevent-libdir value... simple ok (unspecified) checking for external libevent in... /usr checking --with-libevent value... simple ok (unspecified) looking for header without includes checking event.h usability... yes checking event.h presence... yes checking for event.h... yes looking for library without search path checking for library containing event_config_new... no looking for library in lib checking for library containing event_config_new... no looking for library in lib64 checking for library containing event_config_new... no checking for evthread_set_lock_callbacks in -levent... no configure: WARNING: External libevent does not have thread support configure: WARNING: Open MPI requires libevent to be compiled with configure: WARNING: thread support enabled configure: error: Cannot continue !!! Please attach the following file when seeking support: !!! /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1-abi_x86_64.amd64/config.log * ERROR: sys-cluster/openmpi-2.0.1::gentoo failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 115: Called src_configure * environment, line 4865: Called multilib-minimal_src_configure * environment, line 4009: Called multilib_foreach_abi 'multilib-minimal_abi_src_configure' * environment, line 4223: Called multibuild_foreach_variant '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_configure' * environment, line 3939: Called _multibuild_run '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_configure' * environment, line 3937: Called _multilib_multibuild_wrapper 'multilib-minimal_abi_src_configure' * environment, line 601: Called multilib-minimal_abi_src_configure * environment, line 4003: Called multilib_src_configure * environment, line 4438: Called econf '--sysconfdir=/etc/openmpi' '--enable-pretty-print-stacktrace' '--enable-orterun-prefix-by-default' '--with-hwloc=/usr' '--with-libltdl=/usr' '--with-libevent=/usr' '--enable-mpi-fortran=all' '--enable-mpi-cxx' '--without-cma' '--without-cuda' '--disable-io-romio' '--disable-heterogeneous' '--enable-ipv6' '--disable-java' '--disable-mpi-java' '--disable-mpi-thread-multiple' '--without-verbs' '--without-knem' '--without-psm' '--disable-openib-control-hdr-padding' '--disable-openib-connectx-xrc' '--disable-openib-rdmacm' '--disable-openib-udcm' '--disable-openib-dynamic-sl' '--disable-btl-openib-failover' '--without-tm' '--without-slurm' * phase-helpers.sh, line 665: Called __helpers_die 'econf failed' * isolated-functions.sh, line 117: Called die * The specific snippet of code: * die "$@" * * If you need support, post the output of `emerge --info '=sys-cluster/openmpi-2.0.1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sys-cluster/openmpi-2.0.1::gentoo'`. !!! When you file a bug report, please include the following information: GENTOO_VM= CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm" JAVACFLAGS="" COMPILER="" and of course, the output of emerge --info =openmpi-2.0.1 * The complete build log is located at '/var/log/portage/sys-cluster:openmpi-2.0.1:20161213-050603.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/openmpi-2.0.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/openmpi-2.0.1/temp/environment'. * Working directory: '/var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1-abi_x86_64.amd64' * S: '/var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1'