Attachment #386574 for bug #525188




set(CMAKE_CXX_FLAGS_MINSIZEREL "-Os ${CMAKE_CXX_FLAGS}")

set(CMAKE_BUILD_TYPE Release)
set(Boost_USE_STATIC_LIBS OFF)

find_package(Boost 1.39
    COMPONENTS


find_package(Protobuf)
if (PROTOBUF_FOUND)
  include_directories(${Boost_INCLUDE_DIRS} ${PROTOBUF_INCLUDE_DIR} $ENV{BAMTOOLS_INCLUDE})
	set(PROTO_INT 1)
else (PROTOBUF_FOUND)
  include_directories(${Boost_INCLUDE_DIRS} $ENV{BAMTOOLS_INCLUDE})
	set(PROTO_INT 0)
endif(PROTOBUF_FOUND)


Lines 16-26 endif (GPERFTOOLS_TCMALLOC) Link Here

(-)./src/CMakeLists.txt (-2 / +2 lines)
16	if(WIN32)	16	if(WIN32)
17	set(LIBRARIES ${LIBRARIES} "${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.lib" "${CMAKE_CURRENT_SOURCE_DIR}/../win_build/zlibd.lib")	17	set(LIBRARIES ${LIBRARIES} "${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.lib" "${CMAKE_CURRENT_SOURCE_DIR}/../win_build/zlibd.lib")
18	else(WIN32)	18	else(WIN32)
19	set(LIBRARIES ${LIBRARIES} "${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a" "pthread")	19	set(LIBRARIES ${LIBRARIES} "bamtools" "pthread")
20	endif(WIN32)	20	endif(WIN32)
21		21
22	if (PROTOBUF_FOUND)	22	if (PROTOBUF_FOUND)
23	set(LIBRARIES ${LIBRARIES} "libprotobuf.a")	23	set(LIBRARIES ${LIBRARIES} "protobuf")
24	endif(PROTOBUF_FOUND)	24	endif(PROTOBUF_FOUND)
25		25
26	target_link_libraries(express ${LIBRARIES})	26	target_link_libraries(express ${LIBRARIES})

Return to bug 525188

Lines 13-19 set(CMAKE_CXX_FLAGS_RHDEBINFO "-O3 -g ${ Link Here

(-)./CMakeLists.txt (-3 / +3 lines)
13	set(CMAKE_CXX_FLAGS_MINSIZEREL "-Os ${CMAKE_CXX_FLAGS}")	13	set(CMAKE_CXX_FLAGS_MINSIZEREL "-Os ${CMAKE_CXX_FLAGS}")
14		14
15	set(CMAKE_BUILD_TYPE Release)	15	set(CMAKE_BUILD_TYPE Release)
16	set(Boost_USE_STATIC_LIBS ON)	16	set(Boost_USE_STATIC_LIBS OFF)
17		17
18	find_package(Boost 1.39	18	find_package(Boost 1.39
19	COMPONENTS	19	COMPONENTS
Lines 33-42 endif(GPERFTOOLS_TCMALLOC_LIB) Link Here
33		33
34	find_package(Protobuf)	34	find_package(Protobuf)
35	if (PROTOBUF_FOUND)	35	if (PROTOBUF_FOUND)
36	include_directories(${Boost_INCLUDE_DIRS} ${PROTOBUF_INCLUDE_DIR} "${CMAKE_CURRENT_SOURCE_DIR}/bamtools/include")	36	include_directories(${Boost_INCLUDE_DIRS} ${PROTOBUF_INCLUDE_DIR} $ENV{BAMTOOLS_INCLUDE})
37	set(PROTO_INT 1)	37	set(PROTO_INT 1)
38	else (PROTOBUF_FOUND)	38	else (PROTOBUF_FOUND)
39	include_directories(${Boost_INCLUDE_DIRS} "${CMAKE_CURRENT_SOURCE_DIR}/bamtools/include")	39	include_directories(${Boost_INCLUDE_DIRS} $ENV{BAMTOOLS_INCLUDE})
40	set(PROTO_INT 0)	40	set(PROTO_INT 0)
41	endif(PROTOBUF_FOUND)	41	endif(PROTOBUF_FOUND)
42		42