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Gentoo's Bugzilla – Attachment 356808 Details for
Bug 482278
sci-chemistry/coot-0.7.1 version bump
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Suggested ebuild for sci-chemistry/coot-0.7.1
coot-0.7.1.ebuild (text/plain), 4.22 KB, created by
Markus Meier
on 2013-08-23 23:41:17 UTC
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Description:
Suggested ebuild for sci-chemistry/coot-0.7.1
Filename:
MIME Type:
Creator:
Markus Meier
Created:
2013-08-23 23:41:17 UTC
Size:
4.22 KB
patch
obsolete
># Copyright 1999-2013 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.7.ebuild,v 1.2 2013/05/29 06:17:40 jlec Exp $ > >EAPI=4 > >PYTHON_DEPEND="2" > >AUTOTOOLS_AUTORECONF="true" > >inherit autotools-utils python toolchain-funcs versionator > >MY_S2_PV=$(replace_version_separator 2 - ${PV}) >MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1} >MY_S_P=${MY_S2_P}-${PR/r/revision-} >MY_PV=${PV} >MY_P=${PN}-${MY_PV} > >DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation" >HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/" >SRC_URI=" > http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/${MY_P}.tar.gz > test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" > >SLOT="0" >LICENSE="GPL-3" >KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" >IUSE="+openmp static-libs test" > >AUTOTOOLS_IN_SOURCE_BUILD=1 > >SCIDEPS=" > >=sci-libs/ccp4-libs-6.1 > sci-libs/clipper > >=sci-libs/coot-data-2 > >=sci-libs/gsl-1.3 > >=sci-libs/mmdb-1.23 > sci-libs/ssm > <sci-libs/monomer-db-1 > sci-chemistry/reduce > <sci-chemistry/refmac-5.6 > sci-chemistry/probe" > >XDEPS=" > gnome-base/libgnomecanvas > gnome-base/librsvg:2 > media-libs/libpng > media-libs/freeglut > x11-libs/gtk+:2 > x11-libs/goocanvas:0 > x11-libs/gtkglext" > >SCHEMEDEPS=" > dev-scheme/net-http > dev-scheme/guile-gui > >=dev-scheme/guile-lib-0.1.6 > dev-scheme/guile-www > >=x11-libs/guile-gtk-2.1" > >RDEPEND=" > ${SCIDEPS} > ${XDEPS} > ${SCHEMEDEPS} > dev-python/pygtk:2 > >=dev-libs/gmp-4.2.2-r2 > >=net-misc/curl-7.19.6 > net-dns/libidn" >DEPEND="${RDEPEND} > >=sys-devel/libtool-2.4-r2 > dev-lang/swig > sys-devel/bc > test? ( dev-scheme/greg )" > >S="${WORKDIR}/${MY_P}" > >pkg_setup() { > if use openmp; then > tc-has-openmp || die "Please use an OPENMP capable compiler" > fi > python_set_active_version 2 > python_pkg_setup >} > >PATCHES=( > "${FILESDIR}"/${P}-clipper-config.patch > "${FILESDIR}"/${P}-goocanvas.patch > "${FILESDIR}"/${P}-mmdb-config.patch > "${FILESDIR}"/${P}-ssm.patch > ) > >src_prepare() { > sed \ > -e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \ > -i configure.in || die > > autotools-utils_src_prepare >} > >src_configure() { > # All the --with's are used to activate various parts. > # Yes, this is broken behavior. > local myeconfargs=( > --includedir='${prefix}/include/coot' > --with-goocanvas-prefix="${EPREFIX}/usr" > --with-guile > --with-python="${EPREFIX}/usr" > --with-guile-gtk > --with-gtk2 > --with-pygtk > $(use_enable openmp) > ) > autotools-utils_src_configure >} > >src_compile() { > autotools-utils_src_compile > python_convert_shebangs $(python_get_version) "${S}"/src/coot_gtk2.py > cp "${S}"/src/coot_gtk2.py python/coot.py || die >} > >src_test() { > source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh" > mkdir "${T}"/coot_test > > export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb" > export COOT_SCHEME_DIR="${S}/scheme/" > export COOT_RESOURCES_FILE="${S}/cootrc" > export COOT_PIXMAPS_DIR="${S}/pixmaps/" > export COOT_DATA_DIR="${S}/" > export COOT_PYTHON_DIR="${S}/python/" > export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}" > export PYTHONHOME="${EPREFIX}"/usr/ > export CCP4_SCR="${T}"/coot_test/ > export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/" > export SYMINFO="${S}/syminfo.lib" > > export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data > > cat > command-line-greg.scm <<- EOF > (use-modules (ice-9 greg)) > (set! greg-tools (list "greg-tests")) > (set! greg-debug #t) > (set! greg-verbose 5) > (let ((r (greg-test-run))) > (if r > (coot-real-exit 0) > (coot-real-exit 1))) > EOF > > einfo "Running test with following paths ..." > einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES" > einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR" > einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE" > einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR" > einfo "COOT_DATA_DIR $COOT_DATA_DIR" > einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR" > einfo "PYTHONPATH $PYTHONPATH" > einfo "PYTHONHOME $PYTHONHOME" > einfo "CCP4_SCR ${CCP4_SCR}" > einfo "CLIBD_MON ${CLIBD_MON}" > einfo "SYMINFO ${SYMINFO}" > > "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die > "${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die >}
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bug 482278
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356808