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Gentoo's Bugzilla – Attachment 345972 Details for
Bug 464378
=sci-libs/mathgl-2.1.2 - mathgl-2.1.2_build/lang/mathglPYTHON_wrap.cxx:3106:31: fatal error: numpy/arrayobject.h: No such file or directory - ?
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/var/tmp/portage/sci-libs/mathgl-2.1.2/temp/build.log
build.log (text/plain), 167.52 KB, created by
Juergen Rose
on 2013-04-19 05:44:45 UTC
(
hide
)
Description:
/var/tmp/portage/sci-libs/mathgl-2.1.2/temp/build.log
Filename:
MIME Type:
Creator:
Juergen Rose
Created:
2013-04-19 05:44:45 UTC
Size:
167.52 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/mathgl-2.1.2 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: grozin@gentoo.org sci@gentoo.org >[32;01m * [39;49;00mUSE: amd64 doc elibc_glibc fltk gif gsl hdf hdf5 jpeg kernel_linux linguas_ru mpi opengl pdf png python qt4 threads userland_GNU wxwidgets zlib >[32;01m * [39;49;00mFEATURES: sandbox >>>> Unpacking source... >>>> Unpacking mathgl-2.1.2.tar.gz to /var/tmp/portage/sci-libs/mathgl-2.1.2/work >>>> Unpacking STIX_font.tgz to /var/tmp/portage/sci-libs/mathgl-2.1.2/work >>>> Unpacking STIX_font.tgz to /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/fonts >>>> Source unpacked in /var/tmp/portage/sci-libs/mathgl-2.1.2/work >>>> Preparing source in /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build" >cmake --no-warn-unused-cli -C /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DHDF4_INCLUDE_DIR=/usr/include -Denable-doc=ON -Denable-fltk=ON -Denable-gif=ON -Denable-glut=OFF -Denable-gsl=ON -Denable-hdf4=ON -Denable-hdf5_18=ON -Denable-jpeg=ON -Denable-mpi=ON -Denable-octave=OFF -Denable-opengl=ON -Denable-pdf=ON -Denable-png=ON -Denable-qt=ON -Denable-pthread=ON -Denable-python=ON -Denable-wx=ON -Denable-zlib=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/gentoo_rules.cmake /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2 >Not searching for unused variables given on the command line. >loading initial cache file /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/gentoo_common_config.cmake >Re-run cmake no build system arguments >-- The C compiler identification is GNU 4.6.3 >-- The CXX compiler identification is GNU 4.6.3 >-- Check for working C compiler: /usr/bin/mpicc >-- Check for working C compiler: /usr/bin/mpicc -- works >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Check for working CXX compiler: /usr/bin/mpicxx >-- Check for working CXX compiler: /usr/bin/mpicxx -- works >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Looking for sin >-- Looking for sin - found >-- Found MPI_C: /usr/lib64/libmpi.so;/usr/lib64/libdl.so;/usr/lib64/libhwloc.so;/usr/lib64/librt.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libhwloc.so;/usr/lib64/libdl.so >-- Found MPI_CXX: /usr/lib64/libmpi_cxx.so;/usr/lib64/libmpi.so;/usr/lib64/libdl.so;/usr/lib64/libhwloc.so;/usr/lib64/librt.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libhwloc.so;/usr/lib64/libdl.so >-- Looking for include file pthread.h >-- Looking for include file pthread.h - found >-- Looking for pthread_create >-- Looking for pthread_create - found >-- Found Threads: TRUE >-- Found JPEG: /usr/lib64/libjpeg.so >-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") >-- Found PNG: /usr/lib64/libpng.so (found version "1.6.1") >-- Performing Test GIF_GifFileType_UserData >-- Performing Test GIF_GifFileType_UserData - Success >-- Found GIF: /usr/lib64/libgif.so (found version "4") >-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so >-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found >-- Looking for gethostbyname >-- Looking for gethostbyname - found >-- Looking for connect >-- Looking for connect - found >-- Looking for remove >-- Looking for remove - found >-- Looking for shmat >-- Looking for shmat - found >-- Looking for IceConnectionNumber in ICE >-- Looking for IceConnectionNumber in ICE - found >-- Found X11: /usr/lib64/libX11.so >-- Found OpenGL: /usr/lib64/libGL.so >-- Found FLTK: /usr/lib64/fltk-1/libfltk_images.so;/usr/lib64/fltk-1/libfltk_forms.so;/usr/lib64/fltk-1/libfltk_gl.so;/usr/lib64/libGL.so;/usr/lib64/fltk-1/libfltk.so >-- Found wxWidgets: TRUE >-- Looking for Q_WS_X11 >-- Looking for Q_WS_X11 - found >-- Looking for Q_WS_WIN >-- Looking for Q_WS_WIN - not found >-- Looking for Q_WS_QWS >-- Looking for Q_WS_QWS - not found >-- Looking for Q_WS_MAC >-- Looking for Q_WS_MAC - not found >-- Found Qt4: /usr/bin/qmake (found version "4.8.4") >-- Found PythonInterp: /usr/bin/python (found version "2.7.3") >-- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.3") >-- Found SWIG: /usr/bin/swig (found version "2.0.9") >-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY >-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success >-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY >-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success >-- Performing Test COMPILER_HAS_DEPRECATED_ATTR >-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success >-- <<< Gentoo configuration >>> >Build type Gentoo >Install path /usr >Compiler flags: >C -march=amdfam10 -O2 -pipe >C++ -march=amdfam10 -O2 -pipe >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed >Module -Wl,-O1 -Wl,--as-needed >Shared -Wl,-O1 -Wl,--as-needed > >-- Configuring done >-- Generating done >-- Build files have been written to: /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build" >make -j1 VERBOSE=1 >/usr/bin/cmake -H/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2 -B/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build --check-build-system CMakeFiles/Makefile.cmake 0 >/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/CMakeFiles /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/CMakeFiles/progress.marks >make -f CMakeFiles/Makefile2 all >make[1]: Entering directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >make -f src/CMakeFiles/mgl.dir/build.make src/CMakeFiles/mgl.dir/depend >make[2]: Entering directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >cd /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2 /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/src /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src/CMakeFiles/mgl.dir/DependInfo.cmake --color= >Dependee "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src/CMakeFiles/mgl.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src/CMakeFiles/mgl.dir/depend.internal". >Dependee "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src/CMakeFiles/mgl.dir/depend.internal". >[35m[1mScanning dependencies of target mgl >[0mmake[2]: Leaving directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >make -f src/CMakeFiles/mgl.dir/build.make src/CMakeFiles/mgl.dir/build >make[2]: Entering directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >/usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/CMakeFiles >[ 0%] [32mBuilding CXX object src/CMakeFiles/mgl.dir/addon.cpp.o >[0mcd /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src && /usr/bin/mpicxx -DMGL_SRC -DNO_COLOR_ARRAY -Dmgl_EXPORTS -DNDEBUG -march=amdfam10 -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/include -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/src/prc -o CMakeFiles/mgl.dir/addon.cpp.o -c /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/src/addon.cpp >/usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/CMakeFiles >[ 0%] [32mBuilding CXX object src/CMakeFiles/mgl.dir/axis.cpp.o >[0mcd /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src && /usr/bin/mpicxx -DMGL_SRC -DNO_COLOR_ARRAY -Dmgl_EXPORTS -DNDEBUG -march=amdfam10 -O2 -pipe -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/include -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/src/prc -o 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CMakeFiles/udav.dir/moc_data_dlg.cxx.o CMakeFiles/udav.dir/qrc_udav.cxx.o -o udav -rdynamic ../widgets/libmgl-qt.so.7.0.0 /usr/lib64/qt4/libQtGui.so /usr/lib64/qt4/libQtCore.so ../src/libmgl.so.7.0.0 -lhpdf -ljpeg -lgif -lmfhdf -ldf -lgsl -lgslcblas -lGLU -lGL -lSM -lICE -lX11 -lXext -lpng -lz -lmpi_cxx -lmpi -ldl -lhwloc -lrt -lnsl -lutil -lm -ldl -lhwloc -lrt -lnsl -lutil -lm -Wl,-rpath,/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/widgets:/usr/lib64/qt4:/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/src: >make[2]: Leaving directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >/usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/CMakeFiles 89 90 91 92 93 94 95 96 97 98 99 100 >[ 29%] Built target udav >make -f lang/CMakeFiles/_mathgl.dir/build.make lang/CMakeFiles/_mathgl.dir/depend >make[2]: Entering directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >/usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/CMakeFiles >[ 29%] [34m[1mSwig source >[0mcd /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang && /usr/bin/cmake -E make_directory /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang >cd /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang && /usr/bin/swig -python -outdir /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang -c++ -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/include -I/usr/include -I/usr/include/python2.7 -o /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang/mathglPYTHON_wrap.cxx /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/lang/mathgl.i >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:33: Warning 401: Nothing known about base class 'mglDataA'. Ignored. >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:57: Warning 509: Overloaded method mglData::mglData(int,int,double const *) effectively ignored, >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:56: Warning 509: as it is shadowed by mglData::mglData(int,double const *). >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:58: Warning 509: Overloaded method mglData::mglData(double const *,int) effectively ignored, >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:56: Warning 509: as it is shadowed by mglData::mglData(int,double const *). >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:59: Warning 509: Overloaded method mglData::mglData(double const *,int,int) effectively ignored, >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:56: Warning 509: as it is shadowed by mglData::mglData(int,double const *). >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:56: Warning 509: Overloaded method mglData::mglData(int,double const *) effectively ignored, >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include/mgl2/data.h:57: Warning 509: as it is shadowed by mglData::mglData(int,int,double const *). >cd /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2 /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/lang /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang/CMakeFiles/_mathgl.dir/DependInfo.cmake --color= >Dependee "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang/CMakeFiles/_mathgl.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang/CMakeFiles/_mathgl.dir/depend.internal". >Dependee "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang/CMakeFiles/_mathgl.dir/depend.internal". >[35m[1mScanning dependencies of target _mathgl >[0mmake[2]: Leaving directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >make -f lang/CMakeFiles/_mathgl.dir/build.make lang/CMakeFiles/_mathgl.dir/build >make[2]: Entering directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >/usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/CMakeFiles >[ 29%] [32mBuilding CXX object lang/CMakeFiles/_mathgl.dir/mathglPYTHON_wrap.cxx.o >[0mcd /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang && /usr/bin/mpicxx -DNO_COLOR_ARRAY -D_mathgl_EXPORTS -DNDEBUG -march=amdfam10 -O2 -pipe -fPIC -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2/include -I/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/include -I/usr/include/python2.7 -o CMakeFiles/_mathgl.dir/mathglPYTHON_wrap.cxx.o -c /var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang/mathglPYTHON_wrap.cxx >/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build/lang/mathglPYTHON_wrap.cxx:3106:31: fatal error: numpy/arrayobject.h: No such file or directory >compilation terminated. >make[2]: *** [lang/CMakeFiles/_mathgl.dir/mathglPYTHON_wrap.cxx.o] Error 1 >make[2]: Leaving directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >make[1]: *** [lang/CMakeFiles/_mathgl.dir/all] Error 2 >make[1]: Leaving directory `/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' >make: *** [all] Error 2 > [31;01m*[0m ERROR: sci-libs/mathgl-2.1.2 failed (compile phase): > [31;01m*[0m emake failed > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/mathgl-2.1.2'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/mathgl-2.1.2'`. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/mathgl-2.1.2/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/mathgl-2.1.2/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2_build' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/mathgl-2.1.2/work/mathgl-2.1.2'
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