# Copyright 1999-2004 Gentoo Technologies, Inc.
# Distributed under the terms of the GNU General Public License v2
# $Header: $

DESCRIPTION="Codon usage tables calculated from GenBank"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.141.tar.gz"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="~x86"
IUSE="emboss no-raw"

DEPEND="emboss? ( =app-sci/emboss )"

S=${WORKDIR}

src_compile() {
	if use emboss; then
		mkdir CODONS
		einfo "Indexing CUTG for usage with EMBOSS."
		EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \
			"Indexing CUTG failed."
	fi
}

src_install() {
	if ! use no-raw; then
		insinto /usr/share/${PN}
		doins *.codon *.spsum
	fi
	dodoc README
	if use emboss; then
		insinto /usr/share/EMBOSS/data/CODONS
		cd CODONS
		for file in *; do
			doins ${file}
		done
	fi
}