* Package: sci-chemistry/gromacs-4.5.4-r2  * Repository: gentoo  * Maintainer: sci-chemistry@gentoo.org  * USE: X amd64 bash-completion blas elibc_glibc fftw kernel_linux lapack multilib single-precision sse2 threads userland_GNU xml  * FEATURES: preserve-libs sandbox splitdebug userpriv usersandbox >>> Unpacking source... >>> Unpacking gromacs-4.5.4.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work >>> Unpacking 0001-Make-stack-non-executable-for-GAS-assembly.patch.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work >>> Unpacking 0002-Make-stack-non-executable-for-ATT-assembly.patch.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work >>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4 ... * Applying 0001-Make-stack-non-executable-for-GAS-assembly.patch ...  [ ok ] * Applying 0002-Make-stack-non-executable-for-ATT-assembly.patch ...  [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4 ... * Configuring for float precision removed `/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4/cmake/FindBLAS.cmake' removed `/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4/cmake/FindLAPACK.cmake' >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4_float" cmake --no-warn-unused-cli -C /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/temp/gentoo_common_config.cmake -DCMAKE_INSTALL_PREFIX=/usr -DGMX_FFT_LIBRARY=fftw3 -DGMX_X11=ON -DGMX_EXTERNAL_BLAS=ON -DGMX_GSL=OFF -DGMX_EXTERNAL_LAPACK=ON -DGMX_THREADS=ON -DGMX_XML=ON -DGMX_DEFAULT_SUFFIX=off -DGMX_ACCELERATION=sse -DGMX_DOUBLE=OFF -DGMX_MPI=OFF -DGMX_BINARY_SUFFIX= -DGMX_LIBS_SUFFIX= -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/temp/gentoo_rules.cmake /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4 Not searching for unused variables given on the command line. loading initial cache file /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/temp/gentoo_common_config.cmake -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "" -- Using manually set library suffix: "" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - found -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - found -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - found -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - found -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib64/libxml2.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib64/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - unknown -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib64/libfftw3f.so -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- checking for module 'blas' -- found blas, version 3.9.41 -- checking for module 'lapack' -- found lapack, version 3.9.41 -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- <<< Gentoo configuration >>> Build type Gentoo Install path /usr Compiler flags: C --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -O3 -pipe -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 -mtune=corei7 -frecord-gcc-switches -g -Wdisabled-optimization -Wimplicit-function-declaration C++ --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -O3 -pipe -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 -mtune=corei7 -frecord-gcc-switches -g -Wdisabled-optimization -Wenum-compare Linker flags: Executable -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common Module -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu 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g_sigeps Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o [100%] Built target genion [100%] Linking C executable trjcat Built target g_analyze [100%] Building C object src/tools/CMakeFiles/xpm2ps.dir/xpm2ps.c.o Linking C executable trjorder Linking C executable trjconv [100%] [100%] Built target genbox Built target genrestr Built target genconf Linking C executable xpm2ps [100%] [100%] Built target trjcat Built target trjorder [100%] Built target trjconv [100%] Built target xpm2ps Linking C executable mk_angndx [100%] Built target mk_angndx Linking C executable make_edi [100%] Built target make_edi Linking C executable make_ndx [100%] Built target make_ndx >>> Source compiled. >>> Test phase [not enabled]: sci-chemistry/gromacs-4.5.4-r2 >>> Install gromacs-4.5.4-r2 into /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/ category sci-chemistry >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4_float" make -j16 -l12 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[ 94%] [ 94%] Built target g_rmsf [ 94%] Built target g_sham [ 94%] [ 95%] Built target g_select Built target g_sgangle Built target g_rmsdist [ 95%] [ 95%] Built target g_spatial [ 95%] Built target g_spol Built target g_sorient [ 95%] [ 95%] Built target g_sigeps [ 95%] [ 95%] Built target g_rms [ 96%] [ 96%] Built target g_rdf Built target g_rama Built target g_tcaf Built target g_traj [ 96%] [ 96%] Built target g_tune_pme Built target g_vanhove [ 96%] Built target g_velacc [ 97%] [ 97%] Built target genconf Built target g_wheel [ 98%] [ 98%] [ 98%] [ 98%] Built target genion Built target g_wham Built target genbox Built target genrestr [ 99%] [ 99%] [ 99%] Built target xpm2ps Built target trjorder Built target trjconv [ 99%] Built target trjcat [ 99%] [ 99%] Built target mk_angndx Built target make_ndx [100%] Built target make_edi Install the project... -- Install configuration: "Gentoo" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/gromacs/. -- 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/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/mdrun -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/mdrun" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/grompp -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/grompp" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/tpbconv -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/tpbconv" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/pdb2gmx -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/pdb2gmx" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_protonate -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_protonate" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_luck -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_luck" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/gmxdump -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/gmxdump" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_x2top -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_x2top" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/gmxcheck -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/gmxcheck" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/pkgconfig/libgmxpreprocess.pc -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libgmxana.so.6 -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libgmxana.so -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/lib/libgmxana.so.6" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/do_dssp -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/do_dssp" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/editconf -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/editconf" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/eneconv -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/eneconv" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/genbox -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/genbox" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/genconf -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/genconf" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/genrestr -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/genrestr" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_nmtraj -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_nmtraj" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/make_ndx -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/make_ndx" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/mk_angndx -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/mk_angndx" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/trjcat -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/trjcat" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/trjconv -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/trjconv" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/trjorder -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/trjorder" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_wheel -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_wheel" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/xpm2ps -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/xpm2ps" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/genion -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/genion" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_anadock -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_anadock" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/make_edi -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/make_edi" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_analyze -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_analyze" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_anaeig -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_anaeig" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_angle -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_angle" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_bond -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_bond" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_bundle -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_bundle" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_chi -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_chi" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_cluster -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_cluster" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_confrms -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_confrms" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_covar -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_covar" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_current -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_current" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_density -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_density" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_densmap -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_densmap" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dih -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dih" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dielectric -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dielectric" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_helixorient -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_helixorient" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_principal -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_principal" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dipoles -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dipoles" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_disre -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_disre" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dist -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dist" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dyndom -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dyndom" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_enemat -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_enemat" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_energy -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_energy" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_lie -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_lie" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_filter -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_filter" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_gyrate -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_gyrate" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_h2order -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_h2order" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_hbond -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_hbond" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_helix -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_helix" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_mindist -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_mindist" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_msd -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_msd" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_morph -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_morph" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_nmeig -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_nmeig" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_nmens -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_nmens" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_order -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_order" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_kinetics -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_kinetics" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_polystat -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_polystat" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_potential -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_potential" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rama -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rama" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rdf -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rdf" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rms -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rms" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rmsf -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rmsf" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rotacf -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rotacf" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_saltbr -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_saltbr" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sas -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sas" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_select -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_select" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sgangle -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sgangle" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sham -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sham" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sorient -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sorient" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_spol -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_spol" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_spatial -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_spatial" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_tcaf -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_tcaf" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_traj -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_traj" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_tune_pme -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_tune_pme" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_vanhove -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_vanhove" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_velacc -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_velacc" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_clustsize -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_clustsize" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_mdmat -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_mdmat" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_wham -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_wham" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sigeps -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sigeps" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_bar -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_bar" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_membed -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_membed" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_pme_error -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_pme_error" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rmsdist -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rmsdist" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rotmat -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rotmat" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_options -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_options" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/pkgconfig/libgmxana.pc -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/ngmx -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/ngmx" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_xrama -- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_xrama" to "/usr/lib" -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/GMXRC -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/GMXRC.bash -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/GMXRC.zsh -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/GMXRC.csh -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/completion.bash -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/completion.csh -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/completion.zsh -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/demux.pl -- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/xplor2gmx.pl >>> Completed installing gromacs-4.5.4-r2 into /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/ strip: x86_64-pc-linux-gnu-strip --strip-unneeded -R .comment usr/lib/libgmxpreprocess.so.6 usr/lib/libgmx.so.6 usr/lib/libgmxana.so.6 usr/lib/libmd.so.6 usr/bin/g_dih usr/bin/g_sorient usr/bin/grompp usr/bin/g_principal usr/bin/genion usr/bin/g_confrms usr/bin/g_wham usr/bin/g_helixorient usr/bin/editconf usr/bin/trjconv usr/bin/g_sgangle usr/bin/gmxcheck usr/bin/g_velacc usr/bin/trjorder usr/bin/g_gyrate usr/bin/g_anaeig usr/bin/pdb2gmx usr/bin/g_dyndom usr/bin/g_nmtraj usr/bin/g_dielectric usr/bin/xpm2ps usr/bin/g_covar usr/bin/g_sas usr/bin/g_helix usr/bin/gmxdump usr/bin/g_rdf usr/bin/g_clustsize usr/bin/genrestr usr/bin/g_luck usr/bin/g_density usr/bin/tpbconv usr/bin/trjcat usr/bin/eneconv usr/bin/g_traj usr/bin/g_rmsf usr/bin/g_msd usr/bin/g_disre usr/bin/g_energy usr/bin/genconf usr/bin/g_potential usr/bin/g_mindist usr/bin/g_dist usr/bin/g_spatial usr/bin/g_angle usr/bin/g_chi usr/bin/g_protonate usr/bin/g_bond usr/bin/g_saltbr usr/bin/g_enemat usr/bin/g_vanhove usr/bin/g_kinetics usr/bin/g_bar usr/bin/g_rama usr/bin/mdrun usr/bin/g_options usr/bin/g_cluster usr/bin/g_rotmat usr/bin/g_x2top usr/bin/do_dssp usr/bin/g_sigeps usr/bin/g_nmens usr/bin/g_current usr/bin/genbox usr/bin/g_wheel usr/bin/g_tune_pme usr/bin/make_edi usr/bin/g_mdmat usr/bin/g_spol usr/bin/make_ndx usr/bin/g_membed usr/bin/g_morph usr/bin/g_bundle usr/bin/g_lie usr/bin/g_nmeig usr/bin/g_xrama usr/bin/g_pme_error usr/bin/g_densmap usr/bin/g_rmsdist usr/bin/g_rms usr/bin/g_hbond usr/bin/g_filter usr/bin/g_analyze usr/bin/g_order usr/bin/g_polystat usr/bin/mk_angndx usr/bin/g_dipoles usr/bin/g_h2order usr/bin/g_anadock usr/bin/g_tcaf usr/bin/ngmx usr/bin/g_sham usr/bin/g_rotacf usr/bin/g_select compressme (1/1) 100 % 504 B / 3,895 B = 0.129 ecompressdir: xz -z -e -9 -v /usr/share/man ./man1/g_bond.1 (1/90) 100 % 1,272 B / 2,704 B = 0.470 ./man1/trjorder.1 (2/90) 100 % 1,368 B / 3,234 B = 0.423 ./man1/g_covar.1 (3/90) 100 % 1,488 B / 3,714 B = 0.401 ./man1/g_nmtraj.1 (4/90) 100 % 1,260 B / 2,511 B = 0.502 ./man1/g_nmens.1 (5/90) 100 % 1,032 B / 2,066 B = 0.500 ./man1/g_sham.1 (6/90) 100 % 2,224 B / 6,245 B = 0.356 ./man1/g_mindist.1 (7/90) 100 % 1,572 B / 3,927 B = 0.400 ./man1/trjcat.1 (8/90) 100 % 1,556 B / 3,448 B = 0.451 ./man1/g_enemat.1 (9/90) 100 % 1,712 B / 4,369 B = 0.392 ./man1/mk_angndx.1 (10/90) 100 % 700 B / 1,215 B = 0.576 ./man1/genconf.1 (11/90) 100 % 1,252 B / 2,541 B = 0.493 ./man1/g_velacc.1 (12/90) 100 % 1,200 B / 2,815 B = 0.426 ./man1/g_confrms.1 (13/90) 100 % 1,152 B / 2,542 B = 0.453 ./man1/do_dssp.1 (14/90) 100 % 1,628 B / 3,719 B = 0.438 ./man1/g_membed.1 (15/90) 100 % 2,568 B / 7,969 B = 0.322 ./man1/g_anaeig.1 (16/90) 100 % 2,568 B / 7,487 B = 0.343 ./man1/g_bundle.1 (17/90) 100 % 1,412 B / 3,552 B = 0.398 ./man1/g_tcaf.1 (18/90) 100 % 2,012 B / 4,861 B = 0.414 ./man1/g_helixorient.1 (19/90) 100 % 1,404 B / 3,312 B = 0.424 ./man1/g_msd.1 (20/90) 100 % 2,064 B / 5,101 B = 0.405 ./man1/g_current.1 (21/90) 100 % 2,032 B / 5,509 B = 0.369 ./man1/g_order.1 (22/90) 100 % 1,652 B / 4,091 B = 0.404 ./man1/g_rms.1 (23/90) 100 % 2,132 B / 5,620 B = 0.379 ./man1/gmxdump.1 (24/90) 100 % 1,024 B / 1,998 B = 0.513 ./man1/genion.1 (25/90) 100 % 1,868 B / 4,283 B = 0.436 ./man1/g_spol.1 (26/90) 100 % 1,352 B / 3,028 B = 0.446 ./man1/g_h2order.1 (27/90) 100 % 1,208 B / 2,521 B = 0.479 ./man1/g_bar.1 (28/90) 100 % 1,960 B / 4,801 B = 0.408 ./man1/g_analyze.1 (29/90) 100 % 3,484 B / 9,466 B = 0.368 ./man1/g_sorient.1 (30/90) 100 % 1,360 B / 3,549 B = 0.383 ./man1/xpm2ps.1 (31/90) 100 % 2,128 B / 5,264 B = 0.404 ./man1/g_rotacf.1 (32/90) 100 % 1,452 B / 3,429 B = 0.423 ./man1/g_rama.1 (33/90) 100 % 824 B / 1,481 B = 0.556 ./man1/g_rotmat.1 (34/90) 100 % 1,388 B / 3,033 B = 0.458 ./man1/g_gyrate.1 (35/90) 100 % 1,404 B / 3,369 B = 0.417 ./man1/g_dyndom.1 (36/90) 100 % 1,220 B / 2,606 B = 0.468 ./man1/g_principal.1 (37/90) 100 % 832 B / 1,822 B = 0.457 ./man1/g_morph.1 (38/90) 100 % 1,216 B / 2,584 B = 0.471 ./man1/genrestr.1 (39/90) 100 % 1,508 B / 3,435 B = 0.439 ./man1/g_mdmat.1 (40/90) 100 % 1,108 B / 2,238 B = 0.495 ./man1/mdrun.1 (41/90) 100 % 5,936 B / 17.3 KiB = 0.335 ./man1/make_edi.1 (42/90) 100 % 3,596 B / 9,873 B = 0.364 ./man1/g_potential.1 (43/90) 100 % 1,308 B / 2,979 B = 0.439 ./man1/g_hbond.1 (44/90) 100 % 3,136 B / 8,648 B = 0.363 ./man1/g_rmsdist.1 (45/90) 100 % 1,596 B / 3,800 B = 0.420 ./man1/g_x2top.1 (46/90) 100 % 1,680 B / 3,705 B = 0.453 ./man1/g_protonate.1 (47/90) 100 % 928 B / 1,847 B = 0.502 ./man1/ngmx.1 (48/90) 100 % 1,076 B / 1,931 B = 0.557 ./man1/g_anadock.1 (49/90) 100 % 888 B / 1,782 B = 0.498 ./man1/g_traj.1 (50/90) 100 % 1,840 B / 5,171 B = 0.356 ./man1/g_chi.1 (51/90) 100 % 3,244 B / 8,803 B = 0.369 ./man1/g_cluster.1 (52/90) 100 % 2,580 B / 7,266 B = 0.355 ./man1/g_dipoles.1 (53/90) 100 % 2,768 B / 7,741 B = 0.358 ./man1/g_rdf.1 (54/90) 100 % 2,276 B / 5,434 B = 0.419 ./man1/g_density.1 (55/90) 100 % 1,340 B / 2,903 B = 0.462 ./man1/g_rmsf.1 (56/90) 100 % 1,504 B / 3,594 B = 0.418 ./man1/g_vanhove.1 (57/90) 100 % 1,624 B / 4,017 B = 0.404 ./man1/g_lie.1 (58/90) 100 % 900 B / 1,885 B = 0.477 ./man1/g_filter.1 (59/90) 100 % 1,304 B / 3,019 B = 0.432 ./man1/grompp.1 (60/90) 100 % 2,728 B / 6,792 B = 0.402 ./man1/g_disre.1 (61/90) 100 % 1,456 B / 3,463 B = 0.420 ./man1/g_sigeps.1 (62/90) 100 % 888 B / 1,838 B = 0.483 ./man1/g_dist.1 (63/90) 100 % 1,004 B / 2,195 B = 0.457 ./man1/g_clustsize.1 (64/90) 100 % 1,668 B / 4,084 B = 0.408 ./man1/g_xrama.1 (65/90) 100 % 764 B / 1,309 B = 0.584 ./man1/make_ndx.1 (66/90) 100 % 892 B / 1,696 B = 0.526 ./man1/g_saltbr.1 (67/90) 100 % 960 B / 1,716 B = 0.559 ./man1/g_sgangle.1 (68/90) 100 % 1,348 B / 3,156 B = 0.427 ./man1/g_wheel.1 (69/90) 100 % 772 B / 1,328 B = 0.581 ./man1/gmxcheck.1 (70/90) 100 % 1,652 B / 3,874 B = 0.426 ./man1/eneconv.1 (71/90) 100 % 1,172 B / 2,384 B = 0.492 ./man1/editconf.1 (72/90) 100 % 3,116 B / 8,016 B = 0.389 ./man1/genbox.1 (73/90) 100 % 2,304 B / 5,390 B = 0.427 ./man1/g_helix.1 (74/90) 100 % 1,728 B / 3,943 B = 0.438 ./man1/g_dielectric.1 (75/90) 100 % 1,640 B / 4,045 B = 0.405 ./man1/g_polystat.1 (76/90) 100 % 1,404 B / 3,268 B = 0.430 ./man1/g_select.1 (77/90) 100 % 2,036 B / 5,881 B = 0.346 ./man1/g_dih.1 (78/90) 100 % 972 B / 1,911 B = 0.509 ./man1/g_angle.1 (79/90) 100 % 1,816 B / 4,625 B = 0.393 ./man1/g_nmeig.1 (80/90) 100 % 1,092 B / 2,193 B = 0.498 ./man1/g_spatial.1 (81/90) 100 % 2,204 B / 4,683 B = 0.471 ./man1/g_wham.1 (82/90) 100 % 3,552 B / 9,546 B = 0.372 ./man1/g_energy.1 (83/90) 100 % 3,164 B / 9,213 B = 0.343 ./man1/trjconv.1 (84/90) 100 % 4,020 B / 11.0 KiB = 0.356 ./man1/g_sas.1 (85/90) 100 % 1,784 B / 4,123 B = 0.433 ./man1/g_densmap.1 (86/90) 100 % 1,768 B / 4,397 B = 0.402 ./man1/tpbconv.1 (87/90) 100 % 1,340 B / 2,850 B = 0.470 ./man1/pdb2gmx.1 (88/90) 100 % 3,520 B / 9,179 B = 0.383 ./man1/g_tune_pme.1 (89/90) 100 % 3,908 B / 12.0 KiB = 0.318 ./man7/gromacs.7 (90/90) 100 % 5,424 B / 14.6 KiB = 0.363 ecompressdir: xz -z -e -9 -v /usr/share/doc ./gromacs-4.5.4-r2/AUTHORS (1/5) 100 % 212 B / 203 B = 1.044 ./gromacs-4.5.4-r2/INSTALL.cmake (2/5) 100 % 1,300 B / 2,375 B = 0.547 ./gromacs-4.5.4-r2/INSTALL-GPU (3/5) 100 % 1,264 B / 2,274 B = 0.556 ./gromacs-4.5.4-r2/INSTALL.automake (4/5) 100 % 5,168 B / 13.1 KiB = 0.386 ./gromacs-4.5.4-r2/README (5/5) 100 % 1,900 B / 3,598 B = 0.528 Files matching a file type that is not allowed: usr/lib/libgmxpreprocess.so.6 usr/lib/libgmx.so.6 usr/lib/libgmxana.so.6 usr/lib/libmd.so.6 * ERROR: sci-chemistry/gromacs-4.5.4-r2 failed: * multilib-strict check failed! * * Call stack: * misc-functions.sh, line 992: Called install_qa_check * misc-functions.sh, line 716: Called die * The specific snippet of code: * [[ ${abort} == yes ]] && die "multilib-strict check failed!" * * If you need support, post the output of 'emerge --info =sci-chemistry/gromacs-4.5.4-r2', * the complete build log and the output of 'emerge -pqv =sci-chemistry/gromacs-4.5.4-r2'. * The complete build log is located at '/var/log/portage/build/sci-chemistry/gromacs-4.5.4-r2:20110717-183231.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/temp/environment'. * S: '/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4'