Build log

probcons-1.12-r1:20110607-155134.log (text/plain), 46.93 KB, created by Diego Elio Pettenò (RETIRED) on 2011-06-07 16:03:24 UTC

 * Package:    sci-biology/probcons-1.12-r1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        elibc_glibc kernel_linux test userland_GNU x86
 * FEATURES:   sandbox test userpriv usersandbox
>>> Unpacking source...
>>> Unpacking probcons_v1_12.tar.gz to /var/tmp/portage/sci-biology/probcons-1.12-r1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/probcons-1.12-r1/work
>>> Preparing source in /var/tmp/portage/sci-biology/probcons-1.12-r1/work/probcons ...
 * Applying probcons-1.12-cxxflags.patch ...
 [ ok ]
 * Applying gcc-4.3.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/probcons-1.12-r1/work/probcons ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/probcons-1.12-r1/work/probcons ...
make -j14 CXX=i686-pc-linux-gnu-g++ 'OPT_CXXFLAGS=-O2 -pipe' 
i686-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -O2 -pipe -DNDEBUG -DNumInsertStates=2 -DVERSION="1.12" -o probcons Main.cc -lm
i686-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -O2 -pipe -DNDEBUG -DNumInsertStates=2 -DVERSION="1.12" -o compare CompareToRef.cc
i686-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -O2 -pipe -DNDEBUG -DNumInsertStates=2 -DVERSION="1.12" -o project ProjectPairwise.cc
i686-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -O2 -pipe -DNDEBUG -DNumInsertStates=2 -DVERSION="1.12" -o makegnuplot MakeGnuPlot.cc
In file included from ProjectPairwise.cc:8:0:
SafeVector.h:26:22: error: expected ‘)’ before ‘size’
SafeVector.h:27:22: error: expected ‘)’ before ‘size’
In file included from CompareToRef.cc:8:0:
SafeVector.h:26:22: error: expected ‘)’ before ‘size’
SafeVector.h:27:22: error: expected ‘)’ before ‘size’
In file included from Main.cc:7:0:
SafeVector.h:26:22: error: expected ‘)’ before ‘size’
SafeVector.h:27:22: error: expected ‘)’ before ‘size’
In file included from MultiSequence.h:18:0,
                 from ProjectPairwise.cc:9:
Sequence.h: In member function ‘SafeVector<int>* Sequence::GetMapping() const’:
Sequence.h:392:52: error: no matching function for call to ‘SafeVector<int>::SafeVector(int, int)’
Sequence.h:392:52: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
In file included from MultiSequence.h:18:0,
                 from CompareToRef.cc:9:
Sequence.h: In member function ‘SafeVector<int>* Sequence::GetMapping() const’:
Sequence.h:392:52: error: no matching function for call to ‘SafeVector<int>::SafeVector(int, int)’
Sequence.h:392:52: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
In file included from ProjectPairwise.cc:9:0:
MultiSequence.h: In member function ‘char MultiSequence::GetAnnotationChar(SafeVector<char>&)’:
MultiSequence.h:348:35: error: no matching function for call to ‘SafeVector<int>::SafeVector(int, int)’
MultiSequence.h:348:35: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
In file included from CompareToRef.cc:9:0:
MultiSequence.h: In member function ‘char MultiSequence::GetAnnotationChar(SafeVector<char>&)’:
MultiSequence.h:348:35: error: no matching function for call to ‘SafeVector<int>::SafeVector(int, int)’
MultiSequence.h:348:35: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
MultiSequence.h: In member function ‘void MultiSequence::WriteALN(std::ostream&, int)’:
MultiSequence.h:495:67: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(int)’
MultiSequence.h:495:67: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h:496:47: error: no matching function for call to ‘SafeVector<int>::SafeVector(int)’
MultiSequence.h:496:47: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h: In member function ‘void MultiSequence::WriteALN(std::ostream&, int)’:
MultiSequence.h:495:67: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(int)’
MultiSequence.h:495:67: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h:496:47: error: no matching function for call to ‘SafeVector<int>::SafeVector(int)’
MultiSequence.h:496:47: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
In file included from MultiSequence.h:18:0,
                 from Main.cc:8:
Sequence.h: In member function ‘SafeVector<int>* Sequence::GetMapping() const’:
Sequence.h:392:52: error: no matching function for call to ‘SafeVector<int>::SafeVector(int, int)’
Sequence.h:392:52: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
MultiSequence.h: In member function ‘MultiSequence* MultiSequence::Project(const std::set<int>&)’:
MultiSequence.h:652:67: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(std::set<int>::size_type)’
MultiSequence.h:652:67: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘std::set<int>::size_type’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h:653:59: error: no matching function for call to ‘SafeVector<SafeVector<char>*>::SafeVector(std::set<int>::size_type)’
MultiSequence.h:653:59: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = SafeVector<char>*, SafeVector<TYPE> = SafeVector<SafeVector<char>*>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘std::set<int>::size_type’ to ‘const SafeVector<SafeVector<char>*>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = SafeVector<char>*]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h: In member function ‘MultiSequence* MultiSequence::Project(const std::set<int>&)’:
MultiSequence.h:652:67: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(std::set<int>::size_type)’
MultiSequence.h:652:67: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘std::set<int>::size_type’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h:653:59: error: no matching function for call to ‘SafeVector<SafeVector<char>*>::SafeVector(std::set<int>::size_type)’
MultiSequence.h:653:59: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = SafeVector<char>*, SafeVector<TYPE> = SafeVector<SafeVector<char>*>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘std::set<int>::size_type’ to ‘const SafeVector<SafeVector<char>*>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = SafeVector<char>*]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
In file included from Main.cc:8:0:
MultiSequence.h: In member function ‘char MultiSequence::GetAnnotationChar(SafeVector<char>&)’:
MultiSequence.h:348:35: error: no matching function for call to ‘SafeVector<int>::SafeVector(int, int)’
MultiSequence.h:348:35: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
MultiSequence.h: In member function ‘void MultiSequence::WriteALN(std::ostream&, int)’:
MultiSequence.h:495:67: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(int)’
MultiSequence.h:495:67: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h:496:47: error: no matching function for call to ‘SafeVector<int>::SafeVector(int)’
MultiSequence.h:496:47: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h: In member function ‘MultiSequence* MultiSequence::Project(const std::set<int>&)’:
MultiSequence.h:652:67: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(std::set<int>::size_type)’
MultiSequence.h:652:67: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘std::set<int>::size_type’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
MultiSequence.h:653:59: error: no matching function for call to ‘SafeVector<SafeVector<char>*>::SafeVector(std::set<int>::size_type)’
MultiSequence.h:653:59: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = SafeVector<char>*, SafeVector<TYPE> = SafeVector<SafeVector<char>*>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘std::set<int>::size_type’ to ‘const SafeVector<SafeVector<char>*>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = SafeVector<char>*]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
CompareToRef.cc: In function ‘std::set<std::pair<int, int> > ComputePairs(MultiSequence*, bool)’:
CompareToRef.cc:255:49: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(int&)’
CompareToRef.cc:255:49: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
CompareToRef.cc:262:11: error: no matching function for call to ‘SafeVector<int>::SafeVector(int&)’
CompareToRef.cc:262:11: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
CompareToRef.cc: In function ‘std::set<SafeVector<int> > ComputeColumns(MultiSequence*, bool)’:
CompareToRef.cc:319:49: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(int&)’
CompareToRef.cc:319:49: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
CompareToRef.cc:325:11: error: no matching function for call to ‘SafeVector<int>::SafeVector(int&)’
CompareToRef.cc:325:11: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
CompareToRef.cc:336:30: error: no matching function for call to ‘SafeVector<int>::SafeVector(int&)’
CompareToRef.cc:336:30: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
In file included from ProbabilisticModel.h:17:0,
                 from Main.cc:11:
SparseMatrix.h: In member function ‘VF* SparseMatrix::GetPosterior() const’:
SparseMatrix.h:236:62: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
SparseMatrix.h:236:62: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
In file included from Main.cc:11:0:
ProbabilisticModel.h: In constructor ‘ProbabilisticModel::ProbabilisticModel(const VF&, const VF&, const VF&, const VVF&, const VF&)’:
ProbabilisticModel.h:56:59: error: no matching function for call to ‘SafeVector<float>::SafeVector(const int&, float)’
ProbabilisticModel.h:56:59: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h: In member function ‘VF* ProbabilisticModel::ComputeForwardMatrix(Sequence*, Sequence*) const’:
ProbabilisticModel.h:115:88: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, const float&)’
ProbabilisticModel.h:115:88: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h: In member function ‘VF* ProbabilisticModel::ComputeBackwardMatrix(Sequence*, Sequence*) const’:
ProbabilisticModel.h:205:89: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, const float&)’
ProbabilisticModel.h:205:89: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h: In member function ‘VF* ProbabilisticModel::ComputePosteriorMatrix(Sequence*, Sequence*, const VF&, const VF&) const’:
ProbabilisticModel.h:315:62: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
ProbabilisticModel.h:315:62: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h: In member function ‘void ProbabilisticModel::ComputeNewParameters(Sequence*, Sequence*, const VF&, const VF&, VF&, VF&, VF&, VVF&, VF&, bool) const’:
ProbabilisticModel.h:442:66: error: no matching function for call to ‘SafeVector<float>::SafeVector(const int&, const float&)’
ProbabilisticModel.h:442:66: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h:443:44: error: no matching function for call to ‘SafeVector<float>::SafeVector(const int&, const float&)’
ProbabilisticModel.h:443:44: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h:444:43: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, const float&)’
ProbabilisticModel.h:444:43: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h:445:35: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, const float&)’
ProbabilisticModel.h:445:35: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h: In member function ‘std::pair<SafeVector<char>*, float> ProbabilisticModel::ComputeAlignmentWithGapPenalties(MultiSequence*, MultiSequence*, const VF&, int, int, float, float) const’:
ProbabilisticModel.h:717:81: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(int)’
ProbabilisticModel.h:717:81: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:718:81: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(int)’
ProbabilisticModel.h:718:81: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:731:45: error: no matching function for call to ‘SafeVector<int>::SafeVector(int)’
ProbabilisticModel.h:731:45: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:731:74: error: no matching function for call to ‘SafeVector<int>::SafeVector(int)’
ProbabilisticModel.h:731:74: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:732:45: error: no matching function for call to ‘SafeVector<int>::SafeVector(int)’
ProbabilisticModel.h:732:45: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:732:74: error: no matching function for call to ‘SafeVector<int>::SafeVector(int)’
ProbabilisticModel.h:732:74: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<int>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:756:52: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
ProbabilisticModel.h:756:52: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:757:38: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
ProbabilisticModel.h:757:38: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:758:52: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
ProbabilisticModel.h:758:52: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h:759:38: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
ProbabilisticModel.h:759:38: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
ProbabilisticModel.h: In member function ‘std::pair<SafeVector<char>*, float> ProbabilisticModel::ComputeViterbiAlignment(Sequence*, Sequence*) const’:
ProbabilisticModel.h:892:88: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, const float&)’
ProbabilisticModel.h:892:88: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h:897:84: error: no matching function for call to ‘SafeVector<int>::SafeVector(int, int)’
ProbabilisticModel.h:897:84: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
ProbabilisticModel.h: In member function ‘VF* ProbabilisticModel::BuildPosterior(MultiSequence*, MultiSequence*, const SafeVector<SafeVector<SparseMatrix*> >&, float) const’:
ProbabilisticModel.h:1024:65: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, int)’
ProbabilisticModel.h:1024:65: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
In file included from Main.cc:12:0:
EvolutionaryTree.h: In static member function ‘static TreeNode* TreeNode::ComputeTree(const VVF&)’:
EvolutionaryTree.h:107:40: error: no matching function for call to ‘SafeVector<float>::SafeVector(int&)’
EvolutionaryTree.h:107:40: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
EvolutionaryTree.h:108:48: error: no matching function for call to ‘SafeVector<TreeNode*>::SafeVector(int&, NULL)’
EvolutionaryTree.h:108:48: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = TreeNode*, SafeVector<TYPE> = SafeVector<TreeNode*>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = TreeNode*]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
EvolutionaryTree.h:109:38: error: no matching function for call to ‘SafeVector<int>::SafeVector(int&, int)’
EvolutionaryTree.h:109:38: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc: At global scope:
Main.cc:48:31: error: no matching function for call to ‘SafeVector<float>::SafeVector(const int&)’
Main.cc:48:31: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘const int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:49:30: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
Main.cc:49:30: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:50:32: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
Main.cc:50:32: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:51:35: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, double)’
Main.cc:51:35: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc:52:25: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, double)’
Main.cc:52:25: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc: In function ‘int main(int, char**)’:
Main.cc:139:41: error: no matching function for call to ‘SafeVector<float>::SafeVector(const int&)’
Main.cc:139:41: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘const int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:140:40: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
Main.cc:140:40: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:141:42: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
Main.cc:141:42: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:142:45: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, double)’
Main.cc:142:45: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc:143:35: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, double)’
Main.cc:143:35: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc: In function ‘MultiSequence* DoAlign(MultiSequence*, const ProbabilisticModel&, VF&, VF&, VF&, VVF&, VF&)’:
Main.cc:310:41: error: no matching function for call to ‘SafeVector<float>::SafeVector(const int&, int)’
Main.cc:310:41: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc:311:108: error: no matching function for call to ‘SafeVector<SparseMatrix*>::SafeVector(const int&, NULL)’
Main.cc:311:108: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = SparseMatrix*, SafeVector<TYPE> = SafeVector<SparseMatrix*>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = SparseMatrix*]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
make: *** [project] Error 1
make: *** Waiting for unfinished jobs....
Main.cc:354:38: error: no matching function for call to ‘SafeVector<float>::SafeVector(const int&)’
Main.cc:354:38: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘const int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:355:37: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
Main.cc:355:37: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:356:39: error: no matching function for call to ‘SafeVector<float>::SafeVector(int)’
Main.cc:356:39: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘int’ to ‘const SafeVector<float>&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
Main.cc:357:42: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, double)’
Main.cc:357:42: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc:358:32: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, double)’
Main.cc:358:32: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc: In function ‘void ReadParameters()’:
Main.cc:887:39: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, double)’
Main.cc:887:39: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc:888:29: error: no matching function for call to ‘SafeVector<float>::SafeVector(int, double)’
Main.cc:888:29: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc: In function ‘SafeVector<SafeVector<SparseMatrix*> > DoRelaxation(MultiSequence*, SafeVector<SafeVector<SparseMatrix*> >&)’:
Main.cc:1132:111: error: no matching function for call to ‘SafeVector<SparseMatrix*>::SafeVector(const int&, NULL)’
Main.cc:1132:111: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = SparseMatrix*, SafeVector<TYPE> = SafeVector<SparseMatrix*>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = SparseMatrix*]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc: In function ‘void WriteAnnotation(MultiSequence*, const SafeVector<SafeVector<SparseMatrix*> >&)’:
Main.cc:1411:39: error: no matching function for call to ‘SafeVector<int>::SafeVector(const int&, int)’
Main.cc:1411:39: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>]
SafeVector.h:28:3: note:   candidate expects 1 argument, 2 provided
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 2 provided
Main.cc:1412:55: error: no matching function for call to ‘SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >::SafeVector(const int&)’
Main.cc:1412:55: note: candidates are:
SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >]
SafeVector.h:28:3: note:   no known conversion for argument 1 from ‘const int’ to ‘const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >&’
SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >]
SafeVector.h:25:3: note:   candidate expects 0 arguments, 1 provided
make: *** [compare] Error 1
make: *** [probcons] Error 1
emake failed
 * ERROR: sci-biology/probcons-1.12-r1 failed (compile phase):
 *   make failed
 * 
 * Call stack:
 *     ebuild.sh, line  56:  Called src_compile
 *   environment, line 2398:  Called die
 * The specific snippet of code:
 *       emake CXX="$(tc-getCXX)" OPT_CXXFLAGS="${CXXFLAGS}" || die "make failed"
 * 
 * If you need support, post the output of 'emerge --info =sci-biology/probcons-1.12-r1',
 * the complete build log and the output of 'emerge -pqv =sci-biology/probcons-1.12-r1'.
 * The complete build log is located at '/var/log/portage/build/sci-biology/probcons-1.12-r1:20110607-155134.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/probcons-1.12-r1/temp/environment'.
 * S: '/var/tmp/portage/sci-biology/probcons-1.12-r1/work/probcons'