* Package: sci-chemistry/gromacs-4.5.4  * Repository: gentoo  * Maintainer: sci-chemistry@gentoo.org  * USE: elibc_glibc kernel_linux sse test userland_GNU x86  * FEATURES: sandbox test >>> Unpacking source... >>> Unpacking gmxtest-4.0.4.tgz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work >>> Unpacking gromacs-4.5.4.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work >>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4 ... * Running eautoreconf in '/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4' ... * Running aclocal -I config ...  [ ok ] * Running true --copy --force --install --automake ...  [ ok ] * Running aclocal -I config ...  [ ok ] * Running autoconf ...  [ ok ] * Running autoheader ...  [ ok ] * Running automake --add-missing --copy --foreign ...  [ ok ] * Running elibtoolize in: gromacs-4.5.4/config/ * Applying install-sh-1.5.4.patch ... * Applying portage-1.5.10.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-1.5.26.patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4 ... * WARNING: The built-in FFTPACK routines are slow. * Are you sure you don\'t want to use FFTW? * It is free and much faster... * Configuring for float precision >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float" * econf: updating gromacs-4.5.4/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating gromacs-4.5.4/config/config.guess with /usr/share/gnuconfig/config.guess /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --enable-shared --disable-static --bindir=/usr/bin --docdir=/usr/share/doc/gromacs-4.5.4 --enable-float --without-dmalloc --without-fft --without-gsl --without-x --without-xml --disable-threads --disable-ppc-altivec --disable-ia64-asm --without-external-lapack --without-external-blas --disable-fortran --disable-bluegene --disable-la-files --disable-power6 --disable-ia32-sse --disable-x86-64-sse --enable-ia32-sse --disable-mpi --program-suffix= CC=i686-pc-linux-gnu-gcc F77=i686-pc-linux-gnu-gfortran checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... gnutar checking for i686-pc-linux-gnu-cc... i686-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for style of include used by make... 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(cached) no checking if the compiler supports gcc inline assembly... yes checking if the compiler supports MSVC inline assembly... no checking if dlopen supported... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gmxlib/Makefile config.status: creating src/gmxlib/libgmx.pc config.status: creating src/gmxlib/gmx_blas/Makefile config.status: creating src/gmxlib/gmx_lapack/Makefile config.status: creating src/gmxlib/selection/Makefile config.status: creating src/gmxlib/statistics/Makefile config.status: creating src/gmxlib/trajana/Makefile config.status: creating src/gmxlib/thread_mpi/Makefile config.status: creating src/gmxlib/nonbonded/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_c/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_power6/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_f77_single/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_f77_double/Makefile config.status: creating include/Makefile config.status: creating include/types/Makefile config.status: creating include/thread_mpi/Makefile config.status: creating include/thread_mpi/atomic/Makefile config.status: creating src/mdlib/Makefile config.status: creating src/mdlib/libmd.pc config.status: creating src/kernel/Makefile config.status: creating src/kernel/libgmxpreprocess.pc config.status: creating src/tools/Makefile config.status: creating src/tools/libgmxana.pc config.status: creating src/ngmx/Makefile config.status: creating src/contrib/Makefile config.status: creating scripts/Makefile config.status: creating admin/Makefile config.status: creating share/Makefile config.status: creating share/tutor/Makefile config.status: creating share/tutor/gmxdemo/Makefile config.status: creating share/tutor/nmr1/Makefile config.status: creating share/tutor/nmr2/Makefile config.status: creating share/tutor/water/Makefile config.status: creating share/tutor/mixed/Makefile config.status: creating share/tutor/methanol/Makefile config.status: creating share/tutor/speptide/Makefile config.status: creating share/template/Makefile config.status: creating share/top/Makefile config.status: creating share/top/gmx.ff/Makefile config.status: creating share/top/gmx2.ff/Makefile config.status: creating share/top/encadv.ff/Makefile config.status: creating share/top/encads.ff/Makefile config.status: creating share/top/oplsaa.ff/Makefile config.status: creating share/top/gromos43a1.ff/Makefile config.status: creating share/top/gromos43a2.ff/Makefile config.status: creating share/top/gromos45a3.ff/Makefile config.status: creating share/top/gromos53a5.ff/Makefile config.status: creating share/top/gromos53a6.ff/Makefile config.status: creating share/top/charmm27.ff/Makefile config.status: creating share/top/amber94.ff/Makefile config.status: creating share/top/amber96.ff/Makefile config.status: creating share/top/amberGS.ff/Makefile config.status: creating share/top/amber99.ff/Makefile config.status: creating share/top/amber99sb.ff/Makefile config.status: creating share/top/amber99sb-ildn.ff/Makefile config.status: creating share/top/amber03.ff/Makefile config.status: creating share/html/Makefile config.status: creating share/html/images/Makefile config.status: creating share/html/online/Makefile config.status: creating man/Makefile config.status: creating man/man1/Makefile config.status: creating man/man7/Makefile config.status: creating Doxyfile config.status: creating src/config.h config.status: executing depfiles commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4 ... * Compiling for float precision >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float" make -j3 Making all in include make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include' Making all in . make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include' Making all in types make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/types' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/types' Making all in thread_mpi make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi' Making all in atomic make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi/atomic' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi/atomic' make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi' make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi' make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include' Making all in src make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src' (CDPATH="${ZSH_VERSION+.}:" && cd /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4 && /bin/sh /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/config/missing --run autoheader) configure.ac:464: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:1998: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2019: AC_CACHE_CHECK is expanded from... acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... configure.ac:464: the top level configure.ac:464: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_msse2, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_stdgnu99, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_fexcess_precision_fast, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:464: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached acinclude.m4:281: ACX_CHECK_F77_FLAGS is expanded from... configure.ac:579: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:579: the top level configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from... configure.ac:587: the top level configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from... configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached acinclude.m4:3812: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:3811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from... configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached acinclude.m4:4979: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:4978: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached acinclude.m4:5081: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached rm -f stamp-h1 touch /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/config.h.in cd .. && /bin/sh ./config.status src/config.h config.status: creating src/config.h config.status: src/config.h is unchanged make all-recursive make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src' Making all in gmxlib make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib' Making all in nonbonded make[4]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib/nonbonded' Making all in nb_kernel_ia32_sse make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib/nonbonded/nb_kernel_ia32_sse' /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel010_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel030_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel100_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s mkdir .libs i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel010_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel100_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel030_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel101_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel102_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel103_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel101_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel103_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel102_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel104_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel110_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel111_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel111_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c 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--mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel114_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel112_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel130_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel113_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel131_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel114_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel132_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c 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i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel134_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel200_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel133_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel201_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel134_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel202_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel200_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c 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/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel210_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel211_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel212_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer 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i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel230_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel214_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel230_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel231_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel232_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel232_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel231_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel233_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel234_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel233_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel234_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel300_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel301_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel300_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel301_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel302_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel303_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel302_ia32_sse.o i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel303_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel304_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel310_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel304_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel311_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel310_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel312_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel311_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel313_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel312_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel314_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel313_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel330_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel314_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel331_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel330_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel332_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel331_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel333_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel332_ia32_sse.o /bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel334_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel333_ia32_sse.o /bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include -DGMXLIBDIR=\"/usr/share/top\" -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel400_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel334_ia32_sse.o /bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include -DGMXLIBDIR=\"/usr/share/top\" -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel410_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include -DGMXLIBDIR=\"/usr/share/top\" -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c -fPIC -DPIC -o .libs/nb_kernel400_ia32_sse.o In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:22: /usr/lib/gcc/i686-pc-linux-gnu/4.4.5/include/emmintrin.h:32:3: error: #error "SSE2 instruction set not enabled" In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:24: /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:128: error: expected declaration specifiers or '...' before '__m128i' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'printxmmi': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: (Each undeclared identifier is reported only once /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: for each function it appears in.) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: expected expression before ')' token /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_log_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:215: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:216: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'expbase_m1' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:216: error: 'expbase_m1' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:234: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:234: error: expected ';' before 'iexp' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:242: error: 'iexp' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_exp_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:329: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'expbase' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:329: error: 'expbase' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:339: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:339: error: expected ';' before 'iexppart' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:346: error: 'iexppart' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_sincos_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:391: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_izero' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:391: error: '_sincosf_izero' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:392: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_ione' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:392: error: '_sincosf_ione' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:393: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_itwo' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:393: error: '_sincosf_itwo' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:394: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_ithree' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:394: error: '_sincosf_ithree' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:405: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:406: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:420: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:420: error: expected ';' before '_sincosf_q' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:421: error: expected ';' before '_sincosf_offsetSin' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:422: error: expected ';' before '_sincosf_offsetCos' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:436: error: '_sincosf_q' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:439: error: '_sincosf_offsetSin' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:440: error: '_sincosf_offsetCos' undeclared (first use in this function) In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:24: /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_asin_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:506: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_acos_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:574: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_atan_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:611: error: can't convert between vector values of different size i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include -DGMXLIBDIR=\"/usr/share/top\" -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c -fPIC -DPIC -o .libs/nb_kernel410_ia32_sse.o /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c: In function 'nb_kernel400_ia32_sse': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:93: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:94: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:95: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:97: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:97: error: expected ';' before 'n0' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:98: error: expected ';' before 'n0B' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:217: error: 'n0' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:218: error: 'n0B' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:221: error: 'nnn' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:222: error: 'nnnB' undeclared (first use in this function) make[5]: *** [nb_kernel400_ia32_sse.lo] Error 1 make[5]: *** Waiting for unfinished jobs.... In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:22: /usr/lib/gcc/i686-pc-linux-gnu/4.4.5/include/emmintrin.h:32:3: error: #error "SSE2 instruction set not enabled" In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:24: /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:128: error: expected declaration specifiers or '...' before '__m128i' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'printxmmi': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: (Each undeclared identifier is reported only once /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: for each function it appears in.) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: expected expression before ')' token /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_log_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:215: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:216: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'expbase_m1' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:216: error: 'expbase_m1' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:234: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:234: error: expected ';' before 'iexp' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:242: error: 'iexp' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_exp_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:329: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'expbase' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:329: error: 'expbase' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:339: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:339: error: expected ';' before 'iexppart' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:346: error: 'iexppart' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_sincos_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:391: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_izero' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:391: error: '_sincosf_izero' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:392: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_ione' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:392: error: '_sincosf_ione' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:393: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_itwo' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:393: error: '_sincosf_itwo' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:394: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_ithree' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:394: error: '_sincosf_ithree' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:405: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:406: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:420: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:420: error: expected ';' before '_sincosf_q' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:421: error: expected ';' before '_sincosf_offsetSin' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:422: error: expected ';' before '_sincosf_offsetCos' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:436: error: '_sincosf_q' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:439: error: '_sincosf_offsetSin' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:440: error: '_sincosf_offsetCos' undeclared (first use in this function) In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:24: /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_asin_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:506: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_acos_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:574: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_atan_ps': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:611: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c: In function 'nb_kernel410_ia32_sse': /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:97: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:98: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:99: error: can't convert between vector values of different size /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:101: error: '__m128i' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:101: error: expected ';' before 'n0' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:102: error: expected ';' before 'n0B' /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:245: error: 'n0' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:246: error: 'n0B' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:249: error: 'nnn' undeclared (first use in this function) /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:250: error: 'nnnB' undeclared (first use in this function) make[5]: *** [nb_kernel410_ia32_sse.lo] Error 1 make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib/nonbonded/nb_kernel_ia32_sse' make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib/nonbonded' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src' make: *** [all-recursive] Error 1 * ERROR: sci-chemistry/gromacs-4.5.4 failed (compile phase): * emake failed * * If you need support, post the output of 'emerge --info =sci-chemistry/gromacs-4.5.4', * the complete build log and the output of 'emerge -pqv =sci-chemistry/gromacs-4.5.4'. * The complete build log is located at '/var/tmp/portage/sci-chemistry/gromacs-4.5.4/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-4.5.4/temp/environment'. * S: '/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4'