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Gentoo's Bugzilla – Attachment 256486 Details for
Bug 347893
sci-libs/netcdf-4.1.1-r2[dap] fails to build with sys-cluster/openmpi
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/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/temp/build.log
build.log (text/plain), 47.70 KB, created by
Juergen Rose
on 2010-12-06 10:43:33 UTC
(
hide
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Description:
/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/temp/build.log
Filename:
MIME Type:
Creator:
Juergen Rose
Created:
2010-12-06 10:43:33 UTC
Size:
47.70 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/netcdf-4.1.1-r2 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org >[32;01m * [39;49;00mUSE: amd64 cxx doc elibc_glibc fortran hdf5 kernel_linux multilib szip userland_GNU >>>> Unpacking source... >>>> Unpacking netcdf-4.1.1.tar.gz to /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work >>>> Source unpacked in /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work >>>> Preparing source in /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1 ... > [32;01m*[0m Applying netcdf-4.1.1-parallel-build.patch ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying netcdf-4.1.1-implicits.patch ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1' ... > [32;01m*[0m Running aclocal -I m4 ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running libtoolize --copy --force --install --automake ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal -I m4 ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoheader ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy --foreign ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: netcdf-4.1.1/libcf/ > [32;01m*[0m Applying portage-2.2.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... > [32;01m*[0m Applying as-needed-2.2.6.patch ... > [32;01m*[0m Running elibtoolize in: netcdf-4.1.1/ > [32;01m*[0m Applying portage-1.2.0.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... > [32;01m*[0m Applying as-needed-2.2.6.patch ... > [32;01m*[0m Running elibtoolize in: netcdf-4.1.1/udunits/ > [32;01m*[0m Applying portage-2.2.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... > [32;01m*[0m Applying as-needed-2.2.6.patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build" > * econf: updating netcdf-4.1.1/libcf/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating netcdf-4.1.1/libcf/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating netcdf-4.1.1/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating netcdf-4.1.1/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating netcdf-4.1.1/udunits/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating netcdf-4.1.1/udunits/config.sub with /usr/share/gnuconfig/config.sub >/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --enable-shared --disable-static --enable-shared --docdir=/usr/share/doc/netcdf-4.1.1-r2 --disable-dap --disable-static --enable-f77 --enable-f90 --enable-cxx --enable-separate-fortran --enable-netcdf-4 --with-hdf5=/usr --with-zlib=/usr --with-szlib=/usr >configure: loading site script /usr/share/config.site >configure: loading site script /usr/share/crossdev/include/site/linux >configure: netCDF 4.1.1 >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >configure: checking user options >checking whether CXX is set to ''... no >checking whether FC is set to ''... no >checking whether F90 is set to ''... no >checking whether a NCIO_MINBLOCKSIZE was specified... 256 >checking whether udunits is to be built... no >checking if fsync support is enabled... yes >checking whether extra valgrind tests should be run... no >checking whether libcf is to be built... no >checking whether reading of HDF4 SD files is to be enabled... no >checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no >checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled... no >checking whether a location for the parallel-netcdf library was specified... no >checking whether new netCDF-4 C++ API is to be built... no >checking whether extra example tests should be run... no >checking whether parallel IO tests should be run... no >checking whether a location for the HDF5 library was specified... /usr >checking whether a location for the ZLIB library was specified... /usr >checking whether a location for the SZLIB library was specified... /usr >checking whether a location for the HDF4 library was specified... >checking whether a default chunk size in bytes was specified... 4194304 >checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 >checking whether a number of chunks for the default per-variable cache was specified... 10 >checking whether a default file cache size for HDF5 was specified... 4194304 >checking whether a default file cache maximum number of elements for HDF5 was specified... 1009 >checking whether a default cache preemption for HDF5 was specified... 0.75 >checking whether netCDF-4 logging is enabled... no >checking whether a path for curl-config was specified... no >checking whether a location for curl installation was specified... no >configure: checking whether a location for curl-config is in PATH... yes >checking whether DAP client is to be built... no >checking whether dap remote testing should be enabled (default on)... no >checking whether the time-consuming dap tests should be enabled (default off)... no >checking whether a location for liboc was specified... no >checking whether netCDF extra tests should be run (developers only)... no >checking whether Fortran compiler(s) should be tested during configure... yes >checking whether FFIO will be used... no >checking whether to skip C++, F77, or F90 APIs if compiler is broken... yes >checking whether only the C library is desired... no >checking whether examples should be built... yes >checking whether F77 API is desired... yes >checking whether any Fortran API is desired... yes >checking whether F90 API is desired... yes >checking whether fortran type sizes should be checked... yes >checking whether C API is desired... yes >checking where to get netCDF C-only library for separate fortran libraries... >checking whether CXX API is desired... yes >checking whether v2 netCDF API should be built... yes >checking whether the ncgen/ncdump should be built... yes >checking whether large file (> 2GB) tests should be run... no >checking whether benchmaks should be run (experimental)... no >checking whether extreme numbers should be used in tests... yes >checking where to put large temp files if large file tests are run... . >checking whether a win32 DLL is desired... no >checking whether separate fortran libs are desired... yes >configure: finding C compiler >checking for x86_64-pc-linux-gnu-xlc... mpicc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether mpicc accepts -g... yes >checking for mpicc option to accept ISO C89... none needed >checking for style of include used by make... GNU >checking dependency style of mpicc... gcc3 >checking whether mpicc and cc understand -c and -o together... yes >checking for an ANSI C-conforming const... yes >configure: finding Fortran compiler (will not be used if Fortran API is not desired) >checking for x86_64-pc-linux-gnu-xlf90... mpif90 >checking whether we are using the GNU Fortran compiler... yes >checking whether mpif90 accepts -g... yes >checking for x86_64-pc-linux-gnu-xlf... mpif77 >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether mpif77 accepts -g... yes >configure: setting up Fortran 90 >checking for Fortran flag to compile .f90 files... none >checking fortran 90 modules inclusion flag... -I >checking if Fortran compiler can handle Fortran-90... yes >configure: finding C++ compiler (will not be used if C++ API is not desired) >checking whether we are using the GNU C++ compiler... yes >checking whether mpicxx accepts -g... yes >checking dependency style of mpicxx... gcc3 >configure: setting up libtool >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by mpicc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from mpicc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... mt >checking if mt is a manifest tool... no >checking how to run the C preprocessor... mpicc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if mpicc supports -fno-rtti -fno-exceptions... no >checking for mpicc option to produce PIC... -fPIC -DPIC >checking if mpicc PIC flag -fPIC -DPIC works... yes >checking if mpicc static flag -static works... no >checking if mpicc supports -c -o file.o... yes >checking if mpicc supports -c -o file.o... (cached) yes >checking whether the mpicc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... mpicxx -E >checking for ld used by mpicxx... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the mpicxx linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for mpicxx option to produce PIC... -fPIC -DPIC >checking if mpicxx PIC flag -fPIC -DPIC works... yes >checking if mpicxx static flag -static works... no >checking if mpicxx supports -c -o file.o... yes >checking if mpicxx supports -c -o file.o... (cached) yes >checking whether the mpicxx linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for mpif77 option to produce PIC... -fPIC >checking if mpif77 PIC flag -fPIC works... yes >checking if mpif77 static flag -static works... no >checking if mpif77 supports -c -o file.o... yes >checking if mpif77 supports -c -o file.o... (cached) yes >checking whether the mpif77 linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for mpif90 option to produce PIC... -fPIC >checking if mpif90 PIC flag -fPIC works... yes >checking if mpif90 static flag -static works... no >checking if mpif90 supports -c -o file.o... yes >checking if mpif90 supports -c -o file.o... (cached) yes >checking whether the mpif90 linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >configure: finding other utilities >configure: trying to set fortran flags for this platform >checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES= >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >configure: displaying some results >checking CPPFLAGS... >checking CC CFLAGS... mpicc -march=nocona -O2 -pipe -fomit-frame-pointer >checking type mpicc... mpicc is /usr/bin/mpicc >checking CXX... mpicxx >checking CXXFLAGS... -march=nocona -O2 -pipe -fomit-frame-pointer >checking type mpicxx... mpicxx is /usr/bin/mpicxx >checking FC... mpif90 >checking FFLAGS... -march=nocona -O2 -pipe -fomit-frame-pointer >checking type mpif90... mpif90 is /usr/bin/mpif90 >checking F90... mpif90 >checking FCFLAGS... -g -O2 >checking type mpif90... mpif90 is /usr/bin/mpif90 >checking AR... x86_64-pc-linux-gnu-ar >checking AR_FLAGS... cru >checking type x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar is /usr/bin/x86_64-pc-linux-gnu-ar >checking NM... /usr/bin/nm -B >checking NMFLAGS... >checking for /usr/bin/nm... /usr/bin/nm -B >checking nm flags... >checking for C-equivalent to Fortran routine "SUB"... sub_ >checking for Fortran "byte"... yes >checking for Fortran "integer*2"... yes >checking if Fortran "byte" is C "signed char"... yes >checking if Fortran "byte" is C "short"... no >checking if Fortran "byte" is C "int"... no >checking if Fortran "byte" is C "long"... no >checking if Fortran "integer*2" is C "short"... yes >checking if Fortran "integer*2" is C "int"... no >checking if Fortran "integer*2" is C "long"... no >checking if Fortran "integer" is C "int"... yes >checking if Fortran "real" is C "float"... yes >checking if Fortran "doubleprecision" is C "double"... yes >checking for Fortran-equivalent to netCDF "byte"... byte >checking for Fortran-equivalent to netCDF "short"... integer*2 >checking if Fortran 90 compiler capitalizes .mod filenames... no >configure: checking types, headers, and functions >checking for stdlib.h... (cached) yes >checking for sys/types.h... (cached) yes >checking locale.h usability... yes >checking locale.h presence... yes >checking for locale.h... yes >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for ANSI C header files... (cached) yes >checking for sys/wait.h that is POSIX.1 compatible... yes >checking whether time.h and sys/time.h may both be included... yes >checking stdio.h usability... yes >checking stdio.h presence... yes >checking for stdio.h... yes >checking stdarg.h usability... yes >checking stdarg.h presence... yes >checking for stdarg.h... yes >checking errno.h usability... yes >checking errno.h presence... yes >checking for errno.h... yes >checking ctype.h usability... yes >checking ctype.h presence... yes >checking for ctype.h... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking malloc.h usability... yes >checking malloc.h presence... yes >checking for malloc.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/stat.h... (cached) yes >checking getopt.h usability... yes >checking getopt.h presence... yes >checking for getopt.h... yes >checking for vprintf... yes >checking for _doprnt... no >checking for stdbool.h that conforms to C99... yes >checking for _Bool... yes >checking for strlcat... no >checking for strerror... yes >checking for snprintf... yes >checking for strchr... yes >checking for strrchr... yes >checking for mktemp... yes >checking for strcat... yes >checking for strcpy... yes >checking for strdup... yes >checking for strcasecmp... yes >checking for getrlimit... yes >checking for gettimeofday... yes >checking for fsync... yes >checking for MPI_Comm_f2c... yes >checking for size_t... yes >checking for working alloca.h... yes >checking for alloca... yes >checking whether isnan is declared... yes >checking whether isinf is declared... yes >checking whether isfinite is declared... yes >checking whether signbit is declared... yes >checking for struct stat.st_blksize... yes >checking for IEEE floating point format... yes >checking for size_t... (cached) yes >checking for off_t... yes >checking for ssize_t... yes >checking for ptrdiff_t... yes >checking for uchar... no >checking whether char is unsigned... no >checking whether byte ordering is bigendian... no >checking size of short... 2 >checking size of int... 4 >checking size of long... 8 >checking size of float... 4 >checking size of double... 8 >checking size of off_t... 8 >checking size of size_t... 8 >checking for manual-page index command... >checking hdf5.h usability... yes >checking hdf5.h presence... yes >checking for hdf5.h... yes >checking whether we should try to build netCDF-4... yes >checking for H5Fflush in -lhdf5... yes >checking for H5DSis_scale in -lhdf5_hl... yes >checking for H5Pget_fapl_mpiposix in -lhdf5... yes >checking for H5Pget_fapl_mpio in -lhdf5... yes >checking how to modify netcdf.h to deal with parallel I/O... /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/configure: line 26651: libsrc4/netcdf.h: No such file or directory >with parallel >checking whether parallel I/O features are to be included... yes >checking for H5Pset_deflate in -lhdf5... yes >checking for H5Z_can_apply_szip in -lhdf5... no >checking if API dispatch is enabled... no >checking for long long int... yes >checking for unsigned long long int... yes >checking what to call the output of the ftpbin target... binary-netcdf-4.1.1_mpif77_mpif90_mpicxx.tar mpif90 mpicxx >checking binary distribution directory... /home/ftp/pub/binary/dummy_system >checking for library containing xdr_void... none required >configure: XDR Functions appear to be in libc. >checking for rpc/types.h... yes >checking for rpc/xdr.h... yes >configure: generating header files and makefiles >configure: creating ./config.status >config.status: creating Makefile >config.status: creating nc-config >config.status: creating netcdf.pc >config.status: creating man4/Makefile >config.status: creating fortran/Makefile >config.status: creating libsrc/Makefile >config.status: creating libsrc4/Makefile >config.status: creating nctest/Makefile >config.status: creating nc_test4/Makefile >config.status: creating nc_test/Makefile >config.status: creating ncdump/Makefile >config.status: creating ncgen3/Makefile >config.status: creating ncgen/Makefile >config.status: creating nf_test/Makefile >config.status: creating cxx/Makefile >config.status: creating cxx4/Makefile >config.status: creating f90/Makefile >config.status: creating examples/Makefile >config.status: creating examples/C/Makefile >config.status: creating examples/CDL/Makefile >config.status: creating examples/CXX/Makefile >config.status: creating examples/CXX4/Makefile >config.status: creating examples/F90/Makefile >config.status: creating examples/F77/Makefile >config.status: creating libncdap3/Makefile >config.status: creating libncdap3/oc/Makefile >config.status: creating libncdap4/Makefile >config.status: creating ncdap_test/Makefile >config.status: creating ncdap_test/testdata3/Makefile >config.status: creating ncdap_test/expected3/Makefile >config.status: creating ncdap_test/expected4/Makefile >config.status: creating ncdap_test/expectremote3/Makefile >config.status: creating ncdap_test/expectremote4/Makefile >config.status: creating ncdump/cdl4/Makefile >config.status: creating ncdump/expected4/Makefile >config.status: creating config.h >config.status: creating fortran/nfconfig1.inc >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build" >make -j1 pdf >Making pdf in libsrc >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc' >Making pdf in libsrc4 >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc4' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc4' >Making pdf in f90 >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/f90' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/f90' >Making pdf in fortran >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/fortran' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/fortran' >Making pdf in nctest >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/nctest' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/nctest' >Making pdf in ncgen3 >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncgen3' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncgen3' >Making pdf in ncgen >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncgen' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncgen' >Making pdf in ncdump >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncdump' >Making pdf in cdl4 >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncdump/cdl4' >make[2]: Nothing to be done for `pdf'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncdump/cdl4' >Making pdf in expected4 >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncdump/expected4' >make[2]: Nothing to be done for `pdf'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncdump/expected4' >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncdump' >make[2]: Nothing to be done for `pdf-am'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncdump' >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/ncdump' >Making pdf in nf_test >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/nf_test' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/nf_test' >Making pdf in cxx >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/cxx' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/cxx' >Making pdf in nc_test >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/nc_test' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/nc_test' >Making pdf in nc_test4 >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/nc_test4' >make[1]: Nothing to be done for `pdf'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/nc_test4' >Making pdf in man4 >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/man4' >Updating /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/version-c.texi >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/man4' >Making pdf in examples >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples' >Making pdf in C >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/C' >make[2]: Nothing to be done for `pdf'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/C' >Making pdf in CDL >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/CDL' >make[2]: Nothing to be done for `pdf'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/CDL' >Making pdf in F77 >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/F77' >make[2]: Nothing to be done for `pdf'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/F77' >Making pdf in F90 >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/F90' >make[2]: Nothing to be done for `pdf'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/F90' >Making pdf in CXX >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/CXX' >make[2]: Nothing to be done for `pdf'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples/CXX' >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples' >make[2]: Nothing to be done for `pdf-am'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples' >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/examples' >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build' >make[1]: Nothing to be done for `pdf-am'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build' >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build" >make -j1 -j1 -C man4 >make: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/man4' >restore=: && backupdir=".am$$" && \ >am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4 && \ >rm -rf $backupdir && mkdir $backupdir && \ >if (/bin/sh /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/missing --run makeinfo --version) >/dev/null 2>&1; then \ > for f in /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.info /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.info-[0-9] /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.info-[0-9][0-9] /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.i[0-9] /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.i[0-9][0-9]; do \ > if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ > done; \ >else :; fi && \ >cd "$am__cwd"; \ >if /bin/sh /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/missing --run makeinfo -I /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4 \ > -o /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.info /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.texi; \ >then \ > rc=0; \ > CDPATH="${ZSH_VERSION+.}:" && cd /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4; \ >else \ > rc=$?; \ > CDPATH="${ZSH_VERSION+.}:" && cd /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4 && \ > $restore $backupdir/* `echo ".//var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.info" | sed 's|[^/]*$||'`; \ >fi; \ >rm -rf $backupdir; exit $rc >TEXINPUTS="/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4:$TEXINPUTS" \ >MAKEINFO='/bin/sh /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/missing --run makeinfo -I /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4' \ >texi2dvi -s --pdf --batch /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.texi >TEXINPUTS="/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4:$TEXINPUTS" \ >MAKEINFO='/bin/sh /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/missing --run makeinfo -I /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4' \ >texi2dvi -s /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4/netcdf-c.texi >TEXINPUTS="/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/man4:$TEXINPUTS" \ >dvips -o netcdf-c.ps netcdf-c.dvi >This is dvips(k) 5.99 Copyright 2010 Radical Eye Software (www.radicaleye.com) >' TeX output 2010.12.06:1132' -> netcdf-c.ps ></usr/share/texmf/dvips/base/tex.pro></usr/share/texmf/dvips/base/texps.pro> >. </usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmbxsl10.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb> ></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>[1] [2] [-1] >[-2] [-3] [-4] [-5] [-6] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] >[13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] >[28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] >[43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] >[58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] >[73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] >[88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] >[103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] >[116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] >[129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] >[142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] >[155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] >[168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] >[181] [182] [183] [184] [185] [186] [187] [188] [189] [190] >make: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/man4' >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build" >make -j1 >(CDPATH="${ZSH_VERSION+.}:" && cd /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1 && /bin/sh /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/missing --run autoheader) >rm -f stamp-h1 >touch /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/config.h.in >cd . && /bin/sh ./config.status config.h >config.status: creating config.h >config.status: config.h is unchanged >make all-recursive >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build' >Making all in libsrc >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc' >depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT v2i.lo -MD -MP -MF $depbase.Tpo -c -o v2i.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/v2i.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/v2i.c -fPIC -DPIC -o .libs/v2i.o >/bin/sh ../libtool --tag=CC --mode=link mpicc -march=nocona -O2 -pipe -fomit-frame-pointer -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-O1 -Wl,--as-needed -o libnetcdf2.la v2i.lo >libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf2.a .libs/v2i.o >libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf2.a >libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" ) >depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT attr.lo -MD -MP -MF $depbase.Tpo -c -o attr.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/attr.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/attr.c -fPIC -DPIC -o .libs/attr.o >depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT ncx.lo -MD -MP -MF $depbase.Tpo -c -o ncx.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/ncx.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/ncx.c -fPIC -DPIC -o .libs/ncx.o >depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT dim.lo -MD -MP -MF $depbase.Tpo -c -o dim.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/dim.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/dim.c -fPIC -DPIC -o .libs/dim.o >depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT error.lo -MD -MP -MF $depbase.Tpo -c -o error.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/error.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT error.lo -MD -MP -MF .deps/error.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/error.c -fPIC -DPIC -o .libs/error.o >depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT libvers.lo -MD -MP -MF $depbase.Tpo -c -o libvers.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/libvers.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/libvers.c -fPIC -DPIC -o .libs/libvers.o >depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT nc.lo -MD -MP -MF $depbase.Tpo -c -o nc.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/nc.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/nc.c -fPIC -DPIC -o .libs/nc.o >depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT string.lo -MD -MP -MF $depbase.Tpo -c -o string.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/string.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT string.lo -MD -MP -MF .deps/string.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/string.c -fPIC -DPIC -o .libs/string.o >depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT v1hpg.lo -MD -MP -MF $depbase.Tpo -c -o v1hpg.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/v1hpg.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/v1hpg.c -fPIC -DPIC -o .libs/v1hpg.o >depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT var.lo -MD -MP -MF $depbase.Tpo -c -o var.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/var.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT var.lo -MD -MP -MF .deps/var.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/var.c -fPIC -DPIC -o .libs/var.o >depbase=`echo utf8proc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT utf8proc.lo -MD -MP -MF $depbase.Tpo -c -o utf8proc.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/utf8proc.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT utf8proc.lo -MD -MP -MF .deps/utf8proc.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/utf8proc.c -fPIC -DPIC -o .libs/utf8proc.o >depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT putget.lo -MD -MP -MF $depbase.Tpo -c -o putget.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/putget.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/putget.c -fPIC -DPIC -o .libs/putget.o >depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT posixio.lo -MD -MP -MF $depbase.Tpo -c -o posixio.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/posixio.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I.. -I../fortran -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc/posixio.c -fPIC -DPIC -o .libs/posixio.o >/bin/sh ../libtool --tag=CC --mode=link mpicc -march=nocona -O2 -pipe -fomit-frame-pointer -L/usr/lib -L/usr/lib -L/usr/lib -Wl,-O1 -Wl,--as-needed -o libnetcdf3.la attr.lo ncx.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo utf8proc.lo putget.lo posixio.lo >libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf3.a .libs/attr.o .libs/ncx.o .libs/dim.o .libs/error.o .libs/libvers.o .libs/nc.o .libs/string.o .libs/v1hpg.o .libs/var.o .libs/utf8proc.o .libs/putget.o .libs/posixio.o >libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf3.a >libtool: link: ( cd ".libs" && rm -f "libnetcdf3.la" && ln -s "../libnetcdf3.la" "libnetcdf3.la" ) >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc' >Making all in libsrc4 >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc4' >depbase=`echo nc4attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ >/bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4 -I.. -I../fortran -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT nc4attr.lo -MD -MP -MF $depbase.Tpo -c -o nc4attr.lo /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4/nc4attr.c &&\ >mv -f $depbase.Tpo $depbase.Plo >libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4 -I.. -I../fortran -I/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc -I/usr/include -I/usr/include -I/usr/include -march=nocona -O2 -pipe -fomit-frame-pointer -MT nc4attr.lo -MD -MP -MF .deps/nc4attr.Tpo -c /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4/nc4attr.c -fPIC -DPIC -o .libs/nc4attr.o >In file included from /usr/include/H5public.h:57:0, > from /usr/include/hdf5.h:24, > from /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4/nc4internal.h:17, > from /var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1/libsrc4/nc4attr.c:17: >/usr/include/mpi.h:221:37: error: expected identifier or '(' before 'int' >/usr/include/mpi.h:228:29: error: expected identifier or '(' before 'int' >make[2]: *** [nc4attr.lo] Error 1 >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build/libsrc4' >make[1]: *** [all-recursive] Error 1 >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1_build' >make: *** [all] Error 2 >emake failed > [31;01m*[0m ERROR: sci-libs/netcdf-4.1.1-r2 failed: > [31;01m*[0m died running emake, base_src_make > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 56: Called src_compile > [31;01m*[0m environment, line 3136: Called autotools-utils_src_compile > [31;01m*[0m environment, line 430: Called base_src_compile > [31;01m*[0m environment, line 543: Called base_src_make > [31;01m*[0m environment, line 581: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake "$@" || die "died running emake, $FUNCNAME"; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of 'emerge --info =sci-libs/netcdf-4.1.1-r2', > [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-libs/netcdf-4.1.1-r2'. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/temp/environment'. > [31;01m*[0m S: '/var/tmp/portage/sci-libs/netcdf-4.1.1-r2/work/netcdf-4.1.1'
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bug 347893
: 256486