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Gentoo's Bugzilla – Attachment 249651 Details for
Bug 339837
sci-chemistry/gromacs-4.5.1 fails to emerge because SSE2 instruction set is not enabled
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/var/tmp/portage/sci-chemistry/gromacs-4.5.1/temp/build.log
build.log (text/plain), 88.92 KB, created by
Juergen Rose
on 2010-10-05 16:28:16 UTC
(
hide
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Description:
/var/tmp/portage/sci-chemistry/gromacs-4.5.1/temp/build.log
Filename:
MIME Type:
Creator:
Juergen Rose
Created:
2010-10-05 16:28:16 UTC
Size:
88.92 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-chemistry/gromacs-4.5.1 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci-chemistry@gentoo.org >[32;01m * [39;49;00mUSE: X bash-completion blas doc elibc_glibc fftw gsl kernel_linux lapack mpi single-precision threads userland_GNU x86 xml >>>> Unpacking source... >>>> Unpacking gromacs-4.5.1.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work >>>> Unpacking gromacs-4.5.pdf to /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work >unpack gromacs-4.5.pdf: file format not recognized. Ignoring. >>>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1 ... > [32;01m*[0m mdrun uses only threads OR mpi, and gromacs favours the > [32;01m*[0m use of mpi over threads, so a mpi-version of mdrun will > [32;01m*[0m be compiled. If you want to run mdrun on shared memory > [32;01m*[0m machines only, you can safely disable mpi > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1' ... > [32;01m*[0m Running aclocal -I config ... >[A[156C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running true --copy --force --install --automake ... >[A[156C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal -I config ... >[A[156C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[156C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoheader ... >[A[156C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy --foreign ... >[A[156C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: gromacs-4.5.1/config/ > [32;01m*[0m Applying install-sh-1.5.4.patch ... > [32;01m*[0m Applying portage-1.5.10.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... > [32;01m*[0m Applying as-needed-1.5.26.patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1 ... > [32;01m*[0m You have enabled mpi, only mdrun will make use of mpi, that is why > [32;01m*[0m we configure/compile gromacs twice (with and without mpi) and only > [32;01m*[0m install mdrun with mpi support. In addtion you will get libgmx and > [32;01m*[0m libmd with and without mpi support. > [32;01m*[0m Configuring for single precision > * econf: updating gromacs-4.5.1/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating gromacs-4.5.1/config/config.guess with /usr/share/gnuconfig/config.guess >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datadir=/usr/share --bindir=/usr/bin --libdir=/usr/lib --docdir=/usr/share/doc/gromacs-4.5.1 --without-dmalloc --with-fft=fftw3 --with-gsl --with-x --with-xml --enable-threads --disable-bluegene --disable-fortran --with-external-blas --with-external-lapack --disable-all-static --enable-shared --disable-static --enable-float --program-suffix='' --disable-mpi CC=i686-pc-linux-gnu-gcc F77= >configure: loading site script /usr/share/config.site >configure: loading site script /usr/share/crossdev/include/site/linux >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking how to create a ustar tar archive... gnutar >checking for i686-pc-linux-gnu-cc... i686-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for style of include used by make... GNU >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking whether ln -s works... yes >checking whether i686-pc-linux-gnu-gcc accepts -O3... yes >checking whether i686-pc-linux-gnu-gcc accepts -msse2... yes >checking whether i686-pc-linux-gnu-gcc accepts -funroll-all-loops... yes >checking whether i686-pc-linux-gnu-gcc accepts -std=gnu99... yes >checking whether i686-pc-linux-gnu-gcc accepts -fexcess-precision=fast... no >****************************************** >* Using CFLAGS from environment variable * >****************************************** >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for unistd.h... (cached) yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking sched.h usability... yes >checking sched.h presence... yes >checking for sched.h... yes >checking for sysconf... yes >checking for the pthreads library -lpthreads... no >checking whether pthreads work without any flags... no >checking whether pthreads work with -Kthread... no >checking whether pthreads work with -kthread... no >checking for the pthreads library -llthread... no >checking whether pthreads work with -pthread... yes >checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE >checking if more special flags are required for pthreads... no >checking for cc_r... i686-pc-linux-gnu-gcc >checking if atomic operations are supported... yes >checking whether byte ordering is bigendian... no >checking that size_t can hold pointers... yes >checking for SIGUSR1... yes >checking for pipes... yes >checking floating-point format... IEEE754 (little-endian byte and word order) >checking whether ln -s works... yes >checking whether make sets $(MAKE)... (cached) yes >checking for a sed that does not truncate output... /usr/bin/sed >checking for ld used by i686-pc-linux-gnu-gcc ... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking how to recognise dependent libraries... pass_all >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking the maximum length of command line arguments... 32768 >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar >checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib >checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gcc static flag -static works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ static flag -static works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... 64 >checking for _LARGEFILE_SOURCE value needed for large files... no >checking for sqrt in -lm... yes >checking for fftw3.h... yes >checking for main in -lfftw3f... yes >checking rpc/rpc.h usability... yes >checking rpc/rpc.h presence... yes >checking for rpc/rpc.h... yes >checking for rpc/xdr.h... yes >checking for xdr_float in -lnsl... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking for unistd.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/types.h... (cached) yes >checking for sys/time.h... (cached) yes >checking dirent.h usability... yes >checking dirent.h presence... yes >checking for dirent.h... yes >checking regex.h usability... yes >checking regex.h presence... yes >checking for regex.h... yes >checking for working memcmp... yes >checking return type of signal handlers... void >checking for off_t... yes >checking for vprintf... yes >checking for _doprnt... no >checking if malloc debugging is wanted... no >checking for strcasecmp... yes >checking for strdup... yes >checking for gettimeofday... yes >checking for cbrt... yes >checking for isnan... yes >checking for _isnan... no >checking for isfinite... no >checking for _isfinite... no >checking for fsync... yes >checking for fileno... yes >checking for bool... no >checking for library containing posix_memalign... none required >checking for library containing memalign... none required >checking for _aligned_malloc... no >checking size of int... 4 >checking size of long int... 4 >checking size of long long int... 8 >checking size of off_t... 8 >checking size of void*... 4 >checking for X... libraries , headers >checking for gethostbyname... yes >checking for connect... yes >checking for remove... yes >checking for shmat... yes >checking for IceConnectionNumber in -lICE... yes >checking gsl/gsl_version.h usability... yes >checking gsl/gsl_version.h presence... yes >checking for gsl/gsl_version.h... yes >checking for main in -lgslcblas... yes >checking for main in -lgsl... yes >checking libxml/parser.h usability... yes >checking libxml/parser.h presence... yes >checking for libxml/parser.h... yes >checking for main in -lxml2... yes >checking for an ANSI C-conforming const... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking for inline... inline >checking for C/C++ restrict keyword... __restrict >checking for uid_t... yes >checking for gid_t... yes >checking for sig_atomic_t... yes >checking whether your compiler can handle assembly files (*.s)... yes >checking whether as fully supports ia32 SSE... yes >checking whether byte ordering is bigendian... (cached) no >checking if the compiler supports gcc inline assembly... yes >checking if the compiler supports MSVC inline assembly... no >checking if dlopen supported... no >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/gmxlib/Makefile >config.status: creating src/gmxlib/libgmx.pc >config.status: creating src/gmxlib/gmx_blas/Makefile >config.status: creating src/gmxlib/gmx_lapack/Makefile >config.status: creating src/gmxlib/selection/Makefile >config.status: creating src/gmxlib/statistics/Makefile >config.status: creating src/gmxlib/trajana/Makefile >config.status: creating src/gmxlib/thread_mpi/Makefile >config.status: creating src/gmxlib/nonbonded/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_c/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_power6/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_f77_single/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_f77_double/Makefile >config.status: creating include/Makefile >config.status: creating include/types/Makefile >config.status: creating include/thread_mpi/Makefile >config.status: creating include/thread_mpi/atomic/Makefile >config.status: creating src/mdlib/Makefile >config.status: creating src/mdlib/libmd.pc >config.status: creating src/kernel/Makefile >config.status: creating src/kernel/libgmxpreprocess.pc >config.status: creating src/tools/Makefile >config.status: creating src/tools/libgmxana.pc >config.status: creating src/ngmx/Makefile >config.status: creating src/contrib/Makefile >config.status: creating scripts/Makefile >config.status: creating admin/Makefile >config.status: creating share/Makefile >config.status: creating share/tutor/Makefile >config.status: creating share/tutor/gmxdemo/Makefile >config.status: creating share/tutor/nmr1/Makefile >config.status: creating share/tutor/nmr2/Makefile >config.status: creating share/tutor/water/Makefile >config.status: creating share/tutor/mixed/Makefile >config.status: creating share/tutor/methanol/Makefile >config.status: creating share/tutor/speptide/Makefile >config.status: creating share/template/Makefile >config.status: creating share/top/Makefile >config.status: creating share/top/gmx.ff/Makefile >config.status: creating share/top/gmx2.ff/Makefile >config.status: creating share/top/encadv.ff/Makefile >config.status: creating share/top/encads.ff/Makefile >config.status: creating share/top/oplsaa.ff/Makefile >config.status: creating share/top/gromos43a1.ff/Makefile >config.status: creating share/top/gromos43a2.ff/Makefile >config.status: creating share/top/gromos45a3.ff/Makefile >config.status: creating share/top/gromos53a5.ff/Makefile >config.status: creating share/top/gromos53a6.ff/Makefile >config.status: creating share/top/charmm27.ff/Makefile >config.status: creating share/top/amber94.ff/Makefile >config.status: creating share/top/amber96.ff/Makefile >config.status: creating share/top/amberGS.ff/Makefile >config.status: creating share/top/amber99.ff/Makefile >config.status: creating share/top/amber99sb.ff/Makefile >config.status: creating share/top/amber99sb-ildn.ff/Makefile >config.status: creating share/top/amber03.ff/Makefile >config.status: creating share/html/Makefile >config.status: creating share/html/images/Makefile >config.status: creating share/html/online/Makefile >config.status: creating man/Makefile >config.status: creating man/man1/Makefile >config.status: creating man/man7/Makefile >config.status: creating Doxyfile >config.status: creating src/config.h >config.status: executing depfiles commands > * econf: updating gromacs-4.5.1/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating gromacs-4.5.1/config/config.guess with /usr/share/gnuconfig/config.guess >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datadir=/usr/share --bindir=/usr/bin --libdir=/usr/lib --docdir=/usr/share/doc/gromacs-4.5.1 --without-dmalloc --with-fft=fftw3 --with-gsl --with-x --with-xml --enable-threads --disable-bluegene --disable-fortran --with-external-blas --with-external-lapack --disable-all-static --enable-shared --disable-static --enable-float --program-suffix='' --enable-mpi CC=i686-pc-linux-gnu-gcc F77= >configure: loading site script /usr/share/config.site >configure: loading site script /usr/share/crossdev/include/site/linux >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking how to create a ustar tar archive... gnutar >checking for i686-pc-linux-gnu-cc... i686-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for style of include used by make... GNU >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking for mpxlc... no >checking for mpicc... mpicc >checking whether the MPI cc command works... yes >checking for MPI_IN_PLACE in collective operations... yes >checking for catamount... no >checking how to run the C preprocessor... mpicc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking whether ln -s works... yes >checking whether mpicc accepts -O3... yes >checking whether mpicc accepts -msse2... yes >checking whether mpicc accepts -funroll-all-loops... yes >checking whether mpicc accepts -std=gnu99... yes >checking whether mpicc accepts -fexcess-precision=fast... no >****************************************** >* Using CFLAGS from environment variable * >****************************************** >checking whether byte ordering is bigendian... no >checking that size_t can hold pointers... yes >checking for SIGUSR1... yes >checking for pipes... yes >checking floating-point format... IEEE754 (little-endian byte and word order) >checking whether ln -s works... yes >checking whether make sets $(MAKE)... (cached) yes >checking for a sed that does not truncate output... /usr/bin/sed >checking for ld used by mpicc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking how to recognise dependent libraries... pass_all >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking whether we are using the GNU C++ compiler... yes >checking whether mpicc accepts -g... yes >checking dependency style of mpicc... gcc3 >checking how to run the C++ preprocessor... mpicc -E >checking the maximum length of command line arguments... 32768 >checking command to parse /usr/bin/nm -B output from mpicc object... failed >checking for objdir... .libs >checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar >checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib >checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip >checking if mpicc supports -fno-rtti -fno-exceptions... no >checking for mpicc option to produce PIC... -fPIC >checking if mpicc PIC flag -fPIC works... yes >checking if mpicc static flag -static works... no >checking if mpicc supports -c -o file.o... yes >checking whether the mpicc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by mpicc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the mpicc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for mpicc option to produce PIC... -fPIC >checking if mpicc PIC flag -fPIC works... yes >checking if mpicc static flag -static works... no >checking if mpicc supports -c -o file.o... yes >checking whether the mpicc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... 64 >checking for _LARGEFILE_SOURCE value needed for large files... no >checking for sqrt in -lm... yes >checking for fftw3.h... yes >checking for main in -lfftw3f... yes >checking rpc/rpc.h usability... yes >checking rpc/rpc.h presence... yes >checking for rpc/rpc.h... yes >checking for rpc/xdr.h... yes >checking for xdr_float in -lnsl... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking unistd.h usability... yes >checking unistd.h presence... yes >checking for unistd.h... yes >checking for unistd.h... (cached) yes >checking sys/types.h usability... yes >checking sys/types.h presence... yes >checking for sys/types.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking dirent.h usability... yes >checking dirent.h presence... yes >checking for dirent.h... yes >checking regex.h usability... yes >checking regex.h presence... yes >checking for regex.h... yes >checking for working memcmp... yes >checking return type of signal handlers... void >checking for off_t... yes >checking for vprintf... yes >checking for _doprnt... no >checking if malloc debugging is wanted... no >checking for strcasecmp... yes >checking for strdup... yes >checking for gettimeofday... yes >checking for cbrt... yes >checking for isnan... yes >checking for _isnan... no >checking for isfinite... no >checking for _isfinite... no >checking for fsync... yes >checking for fileno... yes >checking for bool... no >checking for library containing posix_memalign... none required >checking for library containing memalign... none required >checking for _aligned_malloc... no >checking size of int... 4 >checking size of long int... 4 >checking size of long long int... 8 >checking size of off_t... 8 >checking size of void*... 4 >checking for X... libraries , headers >checking for gethostbyname... yes >checking for connect... yes >checking for remove... yes >checking for shmat... yes >checking for IceConnectionNumber in -lICE... yes >checking gsl/gsl_version.h usability... yes >checking gsl/gsl_version.h presence... yes >checking for gsl/gsl_version.h... yes >checking for main in -lgslcblas... yes >checking for main in -lgsl... yes >checking libxml/parser.h usability... yes >checking libxml/parser.h presence... yes >checking for libxml/parser.h... yes >checking for main in -lxml2... yes >checking for an ANSI C-conforming const... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking for inline... inline >checking for C/C++ restrict keyword... __restrict >checking for uid_t... yes >checking for gid_t... yes >checking for sig_atomic_t... yes >checking whether your compiler can handle assembly files (*.s)... yes >checking whether as fully supports ia32 SSE... yes >checking whether byte ordering is bigendian... (cached) no >checking if the compiler supports gcc inline assembly... yes >checking if the compiler supports MSVC inline assembly... no >checking if dlopen supported... yes >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/gmxlib/Makefile >config.status: creating src/gmxlib/libgmx_mpi.pc >config.status: creating src/gmxlib/gmx_blas/Makefile >config.status: creating src/gmxlib/gmx_lapack/Makefile >config.status: creating src/gmxlib/selection/Makefile >config.status: creating src/gmxlib/statistics/Makefile >config.status: creating src/gmxlib/trajana/Makefile >config.status: creating src/gmxlib/thread_mpi/Makefile >config.status: creating src/gmxlib/nonbonded/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_c/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_power6/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_f77_single/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_f77_double/Makefile >config.status: creating include/Makefile >config.status: creating include/types/Makefile >config.status: creating include/thread_mpi/Makefile >config.status: creating include/thread_mpi/atomic/Makefile >config.status: creating src/mdlib/Makefile >config.status: creating src/mdlib/libmd_mpi.pc >config.status: creating src/kernel/Makefile >config.status: creating src/kernel/libgmxpreprocess_mpi.pc >config.status: creating src/tools/Makefile >config.status: creating src/tools/libgmxana_mpi.pc >config.status: creating src/ngmx/Makefile >config.status: creating src/contrib/Makefile >config.status: creating scripts/Makefile >config.status: creating admin/Makefile >config.status: creating share/Makefile >config.status: creating share/tutor/Makefile >config.status: creating share/tutor/gmxdemo/Makefile >config.status: creating share/tutor/nmr1/Makefile >config.status: creating share/tutor/nmr2/Makefile >config.status: creating share/tutor/water/Makefile >config.status: creating share/tutor/mixed/Makefile >config.status: creating share/tutor/methanol/Makefile >config.status: creating share/tutor/speptide/Makefile >config.status: creating share/template/Makefile >config.status: creating share/top/Makefile >config.status: creating share/top/gmx.ff/Makefile >config.status: creating share/top/gmx2.ff/Makefile >config.status: creating share/top/encadv.ff/Makefile >config.status: creating share/top/encads.ff/Makefile >config.status: creating share/top/oplsaa.ff/Makefile >config.status: creating share/top/gromos43a1.ff/Makefile >config.status: creating share/top/gromos43a2.ff/Makefile >config.status: creating share/top/gromos45a3.ff/Makefile >config.status: creating share/top/gromos53a5.ff/Makefile >config.status: creating share/top/gromos53a6.ff/Makefile >config.status: creating share/top/charmm27.ff/Makefile >config.status: creating share/top/amber94.ff/Makefile >config.status: creating share/top/amber96.ff/Makefile >config.status: creating share/top/amberGS.ff/Makefile >config.status: creating share/top/amber99.ff/Makefile >config.status: creating share/top/amber99sb.ff/Makefile >config.status: creating share/top/amber99sb-ildn.ff/Makefile >config.status: creating share/top/amber03.ff/Makefile >config.status: creating share/html/Makefile >config.status: creating share/html/images/Makefile >config.status: creating share/html/online/Makefile >config.status: creating man/Makefile >config.status: creating man/man1/Makefile >config.status: creating man/man7/Makefile >config.status: creating Doxyfile >config.status: creating src/config.h >config.status: executing depfiles commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1 ... > [32;01m*[0m Compiling for single precision >make -j1 >Making all in include >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include' >Making all in . >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include' >make[2]: Nothing to be done for `all-am'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include' >Making all in types >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include/types' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include/types' >Making all in thread_mpi >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include/thread_mpi' >Making all in atomic >make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include/thread_mpi/atomic' >make[3]: Nothing to be done for `all'. >make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include/thread_mpi/atomic' >make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include/thread_mpi' >make[3]: Nothing to be done for `all-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include/thread_mpi' >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include/thread_mpi' >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/include' >Making all in src >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src' >(CDPATH="${ZSH_VERSION+.}:" && cd /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1 && /bin/sh /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/config/missing --run autoheader) >configure.ac:454: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_msse2, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_stdgnu99, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_fexcess_precision_fast, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:454: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:281: ACX_CHECK_F77_FLAGS is expanded from... >acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from... >configure.ac:454: the top level >configure.ac:496: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body >../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... >../../lib/autoconf/general.m4:2591: _AC_COMPILE_IFELSE is expanded from... >../../lib/autoconf/general.m4:2607: AC_COMPILE_IFELSE is expanded from... >configure.ac:496: the top level >configure.ac:566: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... >configure.ac:566: the top level >configure.ac:573: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:1690: AC_LIBTOOL_COMPILER_OPTION is expanded from... >acinclude.m4:5890: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... >acinclude.m4:3726: _LT_AC_LANG_C_CONFIG is expanded from... >acinclude.m4:3725: AC_LIBTOOL_LANG_C_CONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:1735: AC_LIBTOOL_LINKER_OPTION is expanded from... >acinclude.m4:5890: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... >acinclude.m4:3726: _LT_AC_LANG_C_CONFIG is expanded from... >acinclude.m4:3725: AC_LIBTOOL_LANG_C_CONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body >../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... >../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... >../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... >acinclude.m4:1364: _LT_AC_SYS_LIBPATH_AIX is expanded from... >acinclude.m4:6417: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... >acinclude.m4:3726: _LT_AC_LANG_C_CONFIG is expanded from... >acinclude.m4:3725: AC_LIBTOOL_LANG_C_CONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body >../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... >../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... >../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... >acinclude.m4:1364: _LT_AC_SYS_LIBPATH_AIX is expanded from... >acinclude.m4:3807: _LT_AC_LANG_CXX_CONFIG is expanded from... >acinclude.m4:3806: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... >acinclude.m4:2862: _LT_AC_TAGCONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:1690: AC_LIBTOOL_COMPILER_OPTION is expanded from... >acinclude.m4:5890: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... >acinclude.m4:3807: _LT_AC_LANG_CXX_CONFIG is expanded from... >acinclude.m4:3806: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... >acinclude.m4:2862: _LT_AC_TAGCONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:1735: AC_LIBTOOL_LINKER_OPTION is expanded from... >acinclude.m4:5890: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... >acinclude.m4:3807: _LT_AC_LANG_CXX_CONFIG is expanded from... >acinclude.m4:3806: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... >acinclude.m4:2862: _LT_AC_TAGCONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:1690: AC_LIBTOOL_COMPILER_OPTION is expanded from... >acinclude.m4:5890: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... >acinclude.m4:4974: _LT_AC_LANG_F77_CONFIG is expanded from... >acinclude.m4:4973: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... >acinclude.m4:2862: _LT_AC_TAGCONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:1735: AC_LIBTOOL_LINKER_OPTION is expanded from... >acinclude.m4:5890: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... >acinclude.m4:4974: _LT_AC_LANG_F77_CONFIG is expanded from... >acinclude.m4:4973: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... >acinclude.m4:2862: _LT_AC_TAGCONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:1690: AC_LIBTOOL_COMPILER_OPTION is expanded from... >acinclude.m4:5890: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... >acinclude.m4:5076: _LT_AC_LANG_GCJ_CONFIG is expanded from... >acinclude.m4:5075: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... >acinclude.m4:2862: _LT_AC_TAGCONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached >../../lib/autoconf/general.m4:2032: AC_CACHE_VAL is expanded from... >../../lib/autoconf/general.m4:2053: AC_CACHE_CHECK is expanded from... >acinclude.m4:1735: AC_LIBTOOL_LINKER_OPTION is expanded from... >acinclude.m4:5890: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... >acinclude.m4:5076: _LT_AC_LANG_GCJ_CONFIG is expanded from... >acinclude.m4:5075: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... >acinclude.m4:2862: _LT_AC_TAGCONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >configure.ac:573: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body >../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... >../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... >../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... >acinclude.m4:1364: _LT_AC_SYS_LIBPATH_AIX is expanded from... >acinclude.m4:6417: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... >acinclude.m4:5076: _LT_AC_LANG_GCJ_CONFIG is expanded from... >acinclude.m4:5075: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... >acinclude.m4:2862: _LT_AC_TAGCONFIG is expanded from... >acinclude.m4:1155: AC_LIBTOOL_SETUP is expanded from... >acinclude.m4:1135: _AC_PROG_LIBTOOL is expanded from... >acinclude.m4:1100: AC_PROG_LIBTOOL is expanded from... >configure.ac:573: the top level >rm -f stamp-h1 >touch /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/config.h.in >cd .. && /bin/sh ./config.status src/config.h >config.status: creating src/config.h >config.status: src/config.h is unchanged >make all-recursive >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src' >Making all in gmxlib >make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src/gmxlib' >Making all in nonbonded >make[4]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src/gmxlib/nonbonded' >Making all in nb_kernel_ia32_sse >make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse' >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel010_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s >mkdir .libs > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel010_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel030_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel030_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel100_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel100_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel101_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel101_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel102_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel102_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel103_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel103_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel104_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel104_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel110_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel110_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel111_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel111_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel112_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel112_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel113_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel113_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel114_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel114_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel130_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel130_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel131_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel131_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel132_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel132_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel133_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel133_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel134_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel134_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel200_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel200_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel201_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel201_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel202_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel202_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel203_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel203_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel203_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel203_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel204_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel204_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel204_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel204_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel210_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel210_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel211_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel211_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel212_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel212_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel213_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel213_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel213_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel213_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel214_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel214_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel230_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel230_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel231_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel231_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel232_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel232_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel233_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel233_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel234_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel234_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel300_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel300_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel301_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel301_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel302_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel302_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel303_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel303_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel304_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel304_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel310_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel310_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel311_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel311_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel312_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel312_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel313_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel313_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel314_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel314_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel330_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel330_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel331_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel331_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel332_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel332_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel333_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel333_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c -o nb_kernel334_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s > i686-pc-linux-gnu-gcc -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s -fPIC -DPIC -o .libs/nb_kernel334_ia32_sse.o >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/usr/include/libxml2 -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -DGMXLIBDIR=\"/usr/share/top\" -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -MT nb_kernel400_ia32_sse.lo -MD -MP -MF .deps/nb_kernel400_ia32_sse.Tpo -c -o nb_kernel400_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/usr/include/libxml2 -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -DGMXLIBDIR=\"/usr/share/top\" -O2 -march=athlon-xp -fomit-frame-pointer -pthread -I/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include -MT nb_kernel400_ia32_sse.lo -MD -MP -MF .deps/nb_kernel400_ia32_sse.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c -fPIC -DPIC -o .libs/nb_kernel400_ia32_sse.o >In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:22: >/usr/lib/gcc/i686-pc-linux-gnu/4.4.4/include/emmintrin.h:32:3: error: #error "SSE2 instruction set not enabled" >In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:24: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:128: error: expected declaration specifiers or â...â before â__m128iâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h: In function âprintxmmiâ: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:132: error: â__m128iâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:132: error: (Each undeclared identifier is reported only once >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:132: error: for each function it appears in.) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:132: error: expected expression before â)â token >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h: In function âgmx_mm_log_psâ: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:192: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:193: error: expected â=â, â,â, â;â, âasmâ or â__attribute__â before âexpbase_m1â >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:193: error: âexpbase_m1â undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:211: error: â__m128iâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:211: error: expected â;â before âiexpâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:219: error: âiexpâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h: In function âgmx_mm_exp_psâ: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:306: error: expected â=â, â,â, â;â, âasmâ or â__attribute__â before âexpbaseâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:306: error: âexpbaseâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:316: error: â__m128iâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:316: error: expected â;â before âiexppartâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:323: error: âiexppartâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h: In function âgmx_mm_sincos_psâ: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:368: error: expected â=â, â,â, â;â, âasmâ or â__attribute__â before â_sincosf_izeroâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:368: error: â_sincosf_izeroâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:369: error: expected â=â, â,â, â;â, âasmâ or â__attribute__â before â_sincosf_ioneâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:369: error: â_sincosf_ioneâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:370: error: expected â=â, â,â, â;â, âasmâ or â__attribute__â before â_sincosf_itwoâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:370: error: â_sincosf_itwoâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:371: error: expected â=â, â,â, â;â, âasmâ or â__attribute__â before â_sincosf_ithreeâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:371: error: â_sincosf_ithreeâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:382: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:383: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:397: error: â__m128iâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:397: error: expected â;â before â_sincosf_qâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:398: error: expected â;â before â_sincosf_offsetSinâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:399: error: expected â;â before â_sincosf_offsetCosâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:413: error: â_sincosf_qâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:416: error: â_sincosf_offsetSinâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:417: error: â_sincosf_offsetCosâ undeclared (first use in this function) >In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:24: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h: In function âgmx_mm_asin_psâ: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:483: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h: In function âgmx_mm_acos_psâ: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:551: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h: In function âgmx_mm_atan_psâ: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/include/gmx_sse2_single.h:588: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c: In function ânb_kernel400_ia32_sseâ: >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:93: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:94: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:95: error: can't convert between vector values of different size >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:97: error: â__m128iâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:97: error: expected â;â before ân0â >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:98: error: expected â;â before ân0Bâ >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:217: error: ân0â undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:218: error: ân0Bâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:221: error: ânnnâ undeclared (first use in this function) >/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:222: error: ânnnBâ undeclared (first use in this function) >make[5]: *** [nb_kernel400_ia32_sse.lo] Error 1 >make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse' >make[4]: *** [all-recursive] Error 1 >make[4]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src/gmxlib/nonbonded' >make[3]: *** [all-recursive] Error 1 >make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src/gmxlib' >make[2]: *** [all-recursive] Error 1 >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src' >make[1]: *** [all] Error 2 >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1-single/src' >make: *** [all-recursive] Error 1 >emake failed > [31;01m*[0m ERROR: sci-chemistry/gromacs-4.5.1 failed: > [31;01m*[0m emake for single precision failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 56: Called src_compile > [31;01m*[0m environment, line 3155: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake || die "emake for ${x} precision failed"; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of 'emerge --info =sci-chemistry/gromacs-4.5.1', > [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-chemistry/gromacs-4.5.1'. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-chemistry/gromacs-4.5.1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-4.5.1/temp/environment'. > [31;01m*[0m S: '/var/tmp/portage/sci-chemistry/gromacs-4.5.1/work/gromacs-4.5.1'
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