Build log of 4.1.1 fail

build.log (text/plain), 48.13 KB, created by MarisN on 2010-08-02 11:48:48 UTC

 [32;01m*[0m CPV:  sci-libs/netcdf-4.1.1
 [32;01m*[0m REPO: gentoo
 [32;01m*[0m USE:  amd64 cxx elibc_glibc fortran kernel_linux multilib userland_GNU
>>> Unpacking source...
>>> Unpacking netcdf-4.1.1.tar.gz to /var/tmp/portage/sci-libs/netcdf-4.1.1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/netcdf-4.1.1/work
>>> Preparing source in /var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1 ...
 * econf: updating netcdf-4.1.1/udunits/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating netcdf-4.1.1/udunits/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating netcdf-4.1.1/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating netcdf-4.1.1/libcf/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating netcdf-4.1.1/libcf/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating netcdf-4.1.1/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --enable-shared --docdir=/usr/share/doc/netcdf-4.1.1 --disable-dap --disable-static --enable-f77 --enable-f90 --enable-cxx --enable-separate-fortran --disable-netcdf-4 --disable-ncgen4 --disable-docs-install
configure: netCDF 4.1.1
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
configure: checking user options
checking whether CXX is set to ''... no
checking whether FC is set to ''... no
checking whether F90 is set to ''... no
checking whether a NCIO_MINBLOCKSIZE was specified... 256
checking whether udunits is to be built... no
checking if fsync support is enabled... yes
checking whether extra valgrind tests should be run... no
checking whether libcf is to be built... no
checking whether reading of HDF4 SD files is to be enabled... no
checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no
checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled... no
checking whether a location for the parallel-netcdf library was specified... no
checking whether new netCDF-4 C++ API is to be built... no
checking whether extra example tests should be run... no
checking whether parallel IO tests should be run... no
checking whether a location for the HDF5 library was specified... 
checking whether a location for the ZLIB library was specified... 
checking whether a location for the SZLIB library was specified... 
checking whether a location for the HDF4 library was specified... 
checking whether a default chunk size in bytes was specified... 4194304
checking whether a maximum per-variable cache size for HDF5 was specified... 67108864
checking whether a number of chunks for the default per-variable cache was specified... 10
checking whether a default file cache size for HDF5 was specified... 4194304
checking whether a default file cache maximum number of elements for HDF5 was specified... 1009
checking whether a default cache preemption for HDF5 was specified... 0.75
checking whether netCDF-4 logging is enabled... no
checking whether a path for curl-config was specified... no
checking whether a location for curl installation was specified... no
configure: checking whether a location for curl-config is in PATH... yes
checking whether DAP client is to be built... no
checking whether dap remote testing should be enabled (default on)... no
checking whether the time-consuming dap tests should be enabled (default off)... no
checking whether a location for liboc was specified... no
checking whether netCDF extra tests should be run (developers only)... no
checking whether Fortran compiler(s) should be tested during configure... yes
checking whether FFIO will be used... no
checking whether to skip C++, F77, or F90 APIs if compiler is broken... yes
checking whether only the C library is desired... no
checking whether examples should be built... yes
checking whether F77 API is desired... yes
checking whether any Fortran API is desired... yes
checking whether F90 API is desired... yes
checking whether fortran type sizes should be checked... yes
checking whether C API is desired... yes
checking where to get netCDF C-only library for separate fortran libraries... 
checking whether CXX API is desired... yes
checking whether v2 netCDF API should be built... yes
checking whether the ncgen/ncdump should be built... yes
checking whether large file (> 2GB) tests should be run... no
checking whether benchmaks should be run (experimental)... no
checking whether extreme numbers should be used in tests... yes
checking where to put large temp files if large file tests are run... .
checking whether a win32 DLL is desired... no
checking whether separate fortran libs are desired... yes
configure: finding C compiler
checking for x86_64-pc-linux-gnu-xlc... no
checking for x86_64-pc-linux-gnu-cc... no
checking for x86_64-pc-linux-gnu-c89... no
checking for x86_64-pc-linux-gnu-acc... no
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
checking for an ANSI C-conforming const... yes
configure: finding Fortran compiler (will not be used if Fortran API is not desired)
checking for x86_64-pc-linux-gnu-xlf90... no
checking for x86_64-pc-linux-gnu-fort... no
checking for x86_64-pc-linux-gnu-xlf95... no
checking for x86_64-pc-linux-gnu-ifort... no
checking for x86_64-pc-linux-gnu-ifc... no
checking for x86_64-pc-linux-gnu-efc... no
checking for x86_64-pc-linux-gnu-pgf95... no
checking for x86_64-pc-linux-gnu-lf95... no
checking for x86_64-pc-linux-gnu-g95... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-fort... no
checking for x86_64-pc-linux-gnu-xlf95... no
checking for x86_64-pc-linux-gnu-ifort... no
checking for x86_64-pc-linux-gnu-ifc... no
checking for x86_64-pc-linux-gnu-efc... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-lf95... no
checking for x86_64-pc-linux-gnu-g95... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
configure: setting up Fortran 90
checking for Fortran flag to compile .f90 files... none
checking fortran 90 modules inclusion flag... -I
checking if Fortran compiler can handle Fortran-90... yes
configure: finding C++ compiler (will not be used if C++ API is not desired)
checking for x86_64-pc-linux-gnu-cl... no
checking for x86_64-pc-linux-gnu-KCC... no
checking for x86_64-pc-linux-gnu-CC... no
checking for x86_64-pc-linux-gnu-cxx... no
checking for x86_64-pc-linux-gnu-cc++... no
checking for x86_64-pc-linux-gnu-xlC... no
checking for x86_64-pc-linux-gnu-aCC... no
checking for x86_64-pc-linux-gnu-c++... x86_64-pc-linux-gnu-c++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-c++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-c++... gcc3
configure: setting up libtool
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-c++ accepts -g... (cached) yes
checking dependency style of x86_64-pc-linux-gnu-c++... (cached) gcc3
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-c++ -E
checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gfortran... (cached) x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by x86_64-pc-linux-gnu-c++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-c++ option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-c++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-c++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: finding other utilities
configure: trying to set fortran flags for this platform
checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES=
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: displaying some results
checking CPPFLAGS... 
checking CC CFLAGS... x86_64-pc-linux-gnu-gcc -march=nocona -O2 -pipe -ggdb
checking type x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc is /usr/bin/x86_64-pc-linux-gnu-gcc
checking CXX... x86_64-pc-linux-gnu-c++
checking CXXFLAGS... -march=nocona -O2 -pipe -ggdb
checking type x86_64-pc-linux-gnu-c++... x86_64-pc-linux-gnu-c++ is /usr/bin/x86_64-pc-linux-gnu-c++
checking FC... x86_64-pc-linux-gnu-gfortran
checking FFLAGS... -g -O2
checking type x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran
checking F90... x86_64-pc-linux-gnu-gfortran
checking FCFLAGS... -g -O2
checking type x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran
checking AR... x86_64-pc-linux-gnu-ar
checking AR_FLAGS... cru
checking type x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar is /usr/bin/x86_64-pc-linux-gnu-ar
checking NM... /usr/bin/nm -B
checking NMFLAGS... 
checking for /usr/bin/nm... /usr/bin/nm -B
checking nm flags... 
checking for C-equivalent to Fortran routine "SUB"... sub_
checking for Fortran "byte"... yes
checking for Fortran "integer*2"... yes
checking if Fortran "byte" is C "signed char"... yes
checking if Fortran "byte" is C "short"... no
checking if Fortran "byte" is C "int"... no
checking if Fortran "byte" is C "long"... no
checking if Fortran "integer*2" is C "short"... yes
checking if Fortran "integer*2" is C "int"... no
checking if Fortran "integer*2" is C "long"... no
checking if Fortran "integer" is C "int"... yes
checking if Fortran "real" is C "float"... yes
checking if Fortran "doubleprecision" is C "double"... yes
checking for Fortran-equivalent to netCDF "byte"... byte
checking for Fortran-equivalent to netCDF "short"... integer*2
checking if Fortran 90 compiler capitalizes .mod filenames... no
configure: checking types, headers, and functions
checking for stdlib.h... (cached) yes
checking for sys/types.h... (cached) yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking whether time.h and sys/time.h may both be included... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for vprintf... yes
checking for _doprnt... no
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for strlcat... no
checking for strerror... yes
checking for snprintf... yes
checking for strchr... yes
checking for strrchr... yes
checking for mktemp... yes
checking for strcat... yes
checking for strcpy... yes
checking for strdup... yes
checking for strcasecmp... yes
checking for getrlimit... yes
checking for gettimeofday... yes
checking for fsync... yes
checking for MPI_Comm_f2c... no
checking for working alloca.h... yes
checking for alloca... yes
checking whether isnan is declared... yes
checking whether isinf is declared... yes
checking whether isfinite is declared... yes
checking whether signbit is declared... yes
checking for struct stat.st_blksize... yes
checking for IEEE floating point format... yes
checking for size_t... yes
checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for uchar... no
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of float... 4
checking size of double... 8
checking size of off_t... 8
checking size of size_t... 8
checking for manual-page index command... 
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking whether we should try to build netCDF-4... no
checking if API dispatch is enabled... no
checking what to call the output of the ftpbin target... binary-netcdf-4.1.1_nc3_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-c++.tar x86_64-pc-linux-gnu-gfortran x86_64-pc-linux-gnu-c++
checking binary distribution directory... /home/ftp/pub/binary/dummy_system
checking for library containing xdr_void... none required
configure: XDR Functions appear to be in libc.
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
configure: generating header files and makefiles
configure: creating ./config.status
config.status: creating Makefile
config.status: creating nc-config
config.status: creating netcdf.pc
config.status: creating man4/Makefile
config.status: creating fortran/Makefile
config.status: creating libsrc/Makefile
config.status: creating libsrc4/Makefile
config.status: creating nctest/Makefile
config.status: creating nc_test4/Makefile
config.status: creating nc_test/Makefile
config.status: creating ncdump/Makefile
config.status: creating ncgen3/Makefile
config.status: creating ncgen/Makefile
config.status: creating nf_test/Makefile
config.status: creating cxx/Makefile
config.status: creating cxx4/Makefile
config.status: creating f90/Makefile
config.status: creating examples/Makefile
config.status: creating examples/C/Makefile
config.status: creating examples/CDL/Makefile
config.status: creating examples/CXX/Makefile
config.status: creating examples/CXX4/Makefile
config.status: creating examples/F90/Makefile
config.status: creating examples/F77/Makefile
config.status: creating libncdap3/Makefile
config.status: creating libncdap3/oc/Makefile
config.status: creating libncdap4/Makefile
config.status: creating ncdap_test/Makefile
config.status: creating ncdap_test/testdata3/Makefile
config.status: creating ncdap_test/expected3/Makefile
config.status: creating ncdap_test/expected4/Makefile
config.status: creating ncdap_test/expectremote3/Makefile
config.status: creating ncdap_test/expectremote4/Makefile
config.status: creating ncdump/cdl4/Makefile
config.status: creating ncdump/expected4/Makefile
config.status: creating config.h
config.status: creating fortran/nfconfig1.inc
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in udunits (/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1/udunits)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr'  '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--libdir=/usr/lib64' '--enable-shared' '--docdir=/usr/share/doc/netcdf-4.1.1' '--disable-dap' '--disable-static' '--enable-f77' '--enable-f90' '--enable-cxx' '--enable-separate-fortran' '--disable-netcdf-4' '--disable-ncgen4' '--disable-docs-install' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'CFLAGS=-march=nocona -O2 -pipe -ggdb' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed' 'CXXFLAGS=-march=nocona -O2 -pipe -ggdb' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for x86_64-pc-linux-gnu-xlc... no
checking for x86_64-pc-linux-gnu-cc... no
checking for x86_64-pc-linux-gnu-c89... no
checking for x86_64-pc-linux-gnu-acc... no
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for bison... bison -y
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking for library containing dirname... none required
checking for library containing log10... -lm
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for inttypes.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
configure: CUNIT not found.  Disabling unit-tests.
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether byte ordering is bigendian... no
checking for floor... yes
checking for memmove... yes
checking for memset... yes
checking for modf... yes
checking for pow... yes
checking for strcasecmp... yes
checking for strdup... yes
checking for strpbrk... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating expat/Makefile
config.status: creating lib/Makefile
config.status: creating lib/xmlFailures/Makefile
config.status: creating lib/xmlSuccesses/Makefile
config.status: creating prog/Makefile
config.status: creating test/Makefile
config.status: creating config.h
config.status: creating expat/expat_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in libcf (/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1/libcf)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr'  '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--libdir=/usr/lib64' '--enable-shared' '--docdir=/usr/share/doc/netcdf-4.1.1' '--disable-dap' '--disable-static' '--enable-f77' '--enable-f90' '--enable-cxx' '--enable-separate-fortran' '--disable-netcdf-4' '--disable-ncgen4' '--disable-docs-install' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'CFLAGS=-march=nocona -O2 -pipe -ggdb' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed' 'CXXFLAGS=-march=nocona -O2 -pipe -ggdb' --cache-file=/dev/null --srcdir=.
configure: libcf 1.0-alpha5
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
configure: checking user options
checking whether FC is set to ''... no
checking whether documentation is to be built... no
checking whether gridspec tools are to be built... no
checking whether gridspec test data should be fetched from Unidata FTP site... no
checking whether cfcheck is to be built... yes
checking whether logging is enabled (useful to CF developers, mainly... no
checking whether netCDF-4 is to be used... no
checking whether extra tests on sample data should be performed... no
checking whether a location for the HDF5 library was specified... 
checking whether a location for the HDF4 library was specified... 
checking whether a location for the ZLIB library was specified... 
checking whether a location for the SZLIB library was specified... 
checking whether Fortran 90 API is desired... yes
checking whether a location for the netCDF library was specified... no
configure: finding C compiler
checking for x86_64-pc-linux-gnu-mpcc_r... no
checking for x86_64-pc-linux-gnu-xlc... no
checking for x86_64-pc-linux-gnu-cc... no
checking for x86_64-pc-linux-gnu-c89... no
checking for x86_64-pc-linux-gnu-acc... no
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
configure: finding Fortran compiler (required, even if Fortran API is not desired)
checking for x86_64-pc-linux-gnu-xlf90... no
checking for x86_64-pc-linux-gnu-fort... no
checking for x86_64-pc-linux-gnu-xlf95... no
checking for x86_64-pc-linux-gnu-ifort... no
checking for x86_64-pc-linux-gnu-ifc... no
checking for x86_64-pc-linux-gnu-efc... no
checking for x86_64-pc-linux-gnu-pgf95... no
checking for x86_64-pc-linux-gnu-lf95... no
checking for x86_64-pc-linux-gnu-g95... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-fort... no
checking for x86_64-pc-linux-gnu-xlf95... no
checking for x86_64-pc-linux-gnu-ifort... no
checking for x86_64-pc-linux-gnu-ifc... no
checking for x86_64-pc-linux-gnu-efc... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-lf95... no
checking for x86_64-pc-linux-gnu-g95... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking for Fortran flag to compile .f90 files... none
checking fortran 90 modules inclusion flag... -I
checking if Fortran 90 compiler capitalizes .mod filenames... no
configure: finding other utilities
configure: setting up libtool
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gfortran... (cached) x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: checking for large file support
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: checking types, headers, and functions
checking for stdlib.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for strerror... yes
checking for strlcat... no
checking for working alloca.h... yes
checking for alloca... yes
checking for struct stat.st_blksize... yes
checking for size_t... yes
checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for uchar... no
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of float... 4
checking size of double... 8
checking size of off_t... 8
checking size of size_t... 8
checking for library containing floor... -lm
configure: generating header files and makefiles
configure: creating ./config.status
config.status: creating gridspec/tools/make_hgrid/run_tests
config.status: creating gridspec/tools/make_vgrid/run_tests
config.status: creating gridspec/tools/make_topog/run_tests
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating cfcheck/Makefile
config.status: creating src/Makefile
config.status: creating gridspec/Makefile
config.status: creating gridspec/shared/Makefile
config.status: creating gridspec/shared/mosaic/Makefile
config.status: creating gridspec/tools/Makefile
config.status: creating gridspec/tools/shared/Makefile
config.status: creating gridspec/tools/make_hgrid/Makefile
config.status: creating gridspec/tools/make_solo_mosaic/Makefile
config.status: creating gridspec/tools/make_coupler_mosaic/Makefile
config.status: creating gridspec/tools/fregrid/Makefile
config.status: creating gridspec/tools/make_topog/Makefile
config.status: creating gridspec/tools/make_vgrid/Makefile
config.status: creating gridspec/tools/river_regrid/Makefile
config.status: creating gridspec/tools/transfer_to_mosaic_grid/Makefile
config.status: creating config.h
config.status: creating nfconfig.inc
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1 ...
make -j2 
make  all-recursive
make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1'
Making all in libsrc
make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1/libsrc'
depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT attr.lo -MD -MP -MF $depbase.Tpo -c -o attr.lo attr.c &&\
	mv -f $depbase.Tpo $depbase.Plo
depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT ncx.lo -MD -MP -MF $depbase.Tpo -c -o ncx.lo ncx.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c  -fPIC -DPIC -o .libs/attr.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c  -fPIC -DPIC -o .libs/ncx.o
depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT dim.lo -MD -MP -MF $depbase.Tpo -c -o dim.lo dim.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c  -fPIC -DPIC -o .libs/dim.o
depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT error.lo -MD -MP -MF $depbase.Tpo -c -o error.lo error.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c  -fPIC -DPIC -o .libs/error.o
depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT libvers.lo -MD -MP -MF $depbase.Tpo -c -o libvers.lo libvers.c &&\
	mv -f $depbase.Tpo $depbase.Plo
depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT nc.lo -MD -MP -MF $depbase.Tpo -c -o nc.lo nc.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c  -fPIC -DPIC -o .libs/libvers.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c  -fPIC -DPIC -o .libs/nc.o
depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT string.lo -MD -MP -MF $depbase.Tpo -c -o string.lo string.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c  -fPIC -DPIC -o .libs/string.o
depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT v1hpg.lo -MD -MP -MF $depbase.Tpo -c -o v1hpg.lo v1hpg.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c  -fPIC -DPIC -o .libs/v1hpg.o
depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT var.lo -MD -MP -MF $depbase.Tpo -c -o var.lo var.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c  -fPIC -DPIC -o .libs/var.o
depbase=`echo utf8proc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT utf8proc.lo -MD -MP -MF $depbase.Tpo -c -o utf8proc.lo utf8proc.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT utf8proc.lo -MD -MP -MF .deps/utf8proc.Tpo -c utf8proc.c  -fPIC -DPIC -o .libs/utf8proc.o
depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT putget.lo -MD -MP -MF $depbase.Tpo -c -o putget.lo putget.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c  -fPIC -DPIC -o .libs/putget.o
depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT posixio.lo -MD -MP -MF $depbase.Tpo -c -o posixio.lo posixio.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c  -fPIC -DPIC -o .libs/posixio.o
depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran         -march=nocona -O2 -pipe -ggdb -MT v2i.lo -MD -MP -MF $depbase.Tpo -c -o v2i.lo v2i.c &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c  -fPIC -DPIC -o .libs/v2i.o
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -march=nocona -O2 -pipe -ggdb     -Wl,-O1 -Wl,--as-needed -o libnetcdf2.la  v2i.lo  
libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf2.a .libs/v2i.o 
libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf2.a
libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" )
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -march=nocona -O2 -pipe -ggdb     -version-info 4:0:0  -Wl,-O1 -Wl,--as-needed -o libnetcdf.la -rpath /usr/lib64 attr.lo ncx.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo utf8proc.lo  putget.lo  posixio.lo  libnetcdf2.la  
libtool: link: x86_64-pc-linux-gnu-gcc -shared  .libs/attr.o .libs/ncx.o .libs/dim.o .libs/error.o .libs/libvers.o .libs/nc.o .libs/string.o .libs/v1hpg.o .libs/var.o .libs/utf8proc.o .libs/putget.o .libs/posixio.o  -Wl,--whole-archive ./.libs/libnetcdf2.a -Wl,--no-whole-archive   -march=nocona -Wl,-O1 -Wl,--as-needed   -Wl,-soname -Wl,libnetcdf.so.4 -o .libs/libnetcdf.so.4.0.0
libtool: link: (cd ".libs" && rm -f "libnetcdf.so.4" && ln -s "libnetcdf.so.4.0.0" "libnetcdf.so.4")
libtool: link: (cd ".libs" && rm -f "libnetcdf.so" && ln -s "libnetcdf.so.4.0.0" "libnetcdf.so")
libtool: link: ( cd ".libs" && rm -f "libnetcdf.la" && ln -s "../libnetcdf.la" "libnetcdf.la" )
make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1/libsrc'
Making all in f90
make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1/f90'
x86_64-pc-linux-gnu-gfortran        -I../libsrc -I.  -g -O2 -c -o typeSizes.o  typeSizes.f90
make  all-am
make[3]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1/f90'
/bin/sh ../libtool --tag=FC   --mode=compile x86_64-pc-linux-gnu-gfortran        -I../libsrc -I.  -g -O2 -c -o typeSizes.lo  typeSizes.f90
/bin/sh ../libtool --tag=FC   --mode=compile x86_64-pc-linux-gnu-gfortran        -I../libsrc -I.  -g -O2 -c -o netcdf.lo  netcdf.f90
libtool: compile:  x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c typeSizes.f90  -fPIC -o .libs/typeSizes.o
libtool: compile:  x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c netcdf.f90  -fPIC -o .libs/netcdf.o
x86_64-pc-linux-gnu-gfortran        -I../libsrc -I.  -g -O2 -c -o netcdf.o  netcdf.f90
Fatal Error: Can't rename module file 'netcdf.mod0' to 'netcdf.mod': No such file or directory
make[3]: *** [netcdf.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1/f90'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1/f90'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1'
make: *** [all] Error 2
 [31;01m*[0m ERROR: sci-libs/netcdf-4.1.1 failed:
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  54:  Called src_compile
 [31;01m*[0m   environment, line 2343:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       emake || die "emake failed"
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sci-libs/netcdf-4.1.1',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-libs/netcdf-4.1.1'.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/netcdf-4.1.1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/netcdf-4.1.1/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/netcdf-4.1.1/work/netcdf-4.1.1'