* CPV: sci-libs/libghemical-2.00 * REPO: gentoo * USE: elibc_glibc kernel_linux test userland_GNU x86 >>> Unpacking source... >>> Unpacking libghemical-2.00.tar.gz to /var/tmp/portage/sci-libs/libghemical-2.00/work * Applying 2.00-really-find-blas-and-lapack.patch ...  [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-libs/libghemical-2.00/work/libghemical-2.00' ... * Running aclocal ...  [ ok ] * Running libtoolize --copy --force --install --automake ...  [ ok ] * Running aclocal ...  [ ok ] * Running autoconf ...  [ ok ] * Running autoheader ...  [ ok ] * Running automake --add-missing --copy ...  [ ok ] * Running elibtoolize in: libghemical-2.00 * Applying portage-2.2.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-2.2.6.patch ... >>> Source unpacked in /var/tmp/portage/sci-libs/libghemical-2.00/work >>> Compiling source in /var/tmp/portage/sci-libs/libghemical-2.00/work/libghemical-2.00 ... * econf: updating libghemical-2.00/config.guess with /usr/share/gnuconfig/config.guess * econf: updating libghemical-2.00/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-mopac7 --disable-mpqc checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of i686-pc-linux-gnu-gcc... gcc3 checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking dependency style of i686-pc-linux-gnu-g++... gcc3 checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r checking for i686-pc-linux-gnu-objdump... i686-pc-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether i686-pc-linux-gnu-g++ accepts -g... (cached) yes checking dependency style of i686-pc-linux-gnu-g++... (cached) gcc3 checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E checking for objdir... .libs checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-pc-linux-gnu-gcc static flag -static works... yes checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes checking if i686-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if i686-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if i686-pc-linux-gnu-g++ static flag -static works... yes checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes checking if i686-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/bin/ar checking for sh... /bin/sh checking whether make sets $(MAKE)... (cached) yes checking for acos in -lm... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C99... -std=gnu99 checking for i686-pc-linux-gnu-gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 checking for an ANSI C-conforming const... yes checking for inline... inline checking for ANSI C header files... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating bin/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating libghemical.pc config.status: creating src/libghemicalconfig.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands build options: ^^^^^^^^^^^^^^ enable MPQC : no enable MOPAC7 : no make -j1 Making all in src make[1]: Entering directory `/var/tmp/portage/sci-libs/libghemical-2.00/work/libghemical-2.00/src' make all-am make[2]: Entering directory `/var/tmp/portage/sci-libs/libghemical-2.00/work/libghemical-2.00/src' /bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../src -march=athlon-xp -O2 -pipe -fomit-frame-pointer -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c -o atom.lo atom.cpp libtool: compile: i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../src -march=athlon-xp -O2 -pipe -fomit-frame-pointer -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c atom.cpp -fPIC -DPIC -o .libs/atom.o atom.cpp:16: warning: deprecated conversion from string constant to 'char*' atom.cpp: In constructor 'element::element(char*)': atom.cpp:164: error: 'strcmp' was not declared in this scope atom.cpp: In constructor 'atom::atom(element, const fGL*, i32u)': atom.cpp:282: error: 'EXIT_FAILURE' was not declared in this scope atom.cpp:282: error: 'exit' was not declared in this scope atom.cpp: In copy constructor 'atom::atom(const atom&)': atom.cpp:312: error: 'strcpy' was not declared in this scope atom.cpp:322: error: 'EXIT_FAILURE' was not declared in this scope atom.cpp:322: error: 'exit' was not declared in this scope atom.cpp: In member function 'const fGL* atom::GetCRD(i32u)': atom.cpp:352: error: 'EXIT_FAILURE' was not declared in this scope atom.cpp:352: error: 'exit' was not declared in this scope atom.cpp: In member function 'void atom::SetCRD(i32s, fGL, fGL, fGL)': atom.cpp:374: error: 'EXIT_FAILURE' was not declared in this scope atom.cpp:374: error: 'exit' was not declared in this scope make[2]: *** [atom.lo] Error 1 make[2]: Leaving directory `/var/tmp/portage/sci-libs/libghemical-2.00/work/libghemical-2.00/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/var/tmp/portage/sci-libs/libghemical-2.00/work/libghemical-2.00/src' make: *** [all-recursive] Error 1 * ERROR: sci-libs/libghemical-2.00 failed: * make failed * * Call stack: * ebuild.sh, line 54: Called src_compile * environment, line 2829: Called die * The specific snippet of code: * emake || die "make failed" * * If you need support, post the output of 'emerge --info =sci-libs/libghemical-2.00', * the complete build log and the output of 'emerge -pqv =sci-libs/libghemical-2.00'. * The complete build log is located at '/var/tmp/portage/sci-libs/libghemical-2.00/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/libghemical-2.00/temp/environment'. * S: '/var/tmp/portage/sci-libs/libghemical-2.00/work/libghemical-2.00'