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Gentoo's Bugzilla – Attachment 227093 Details for
Bug 314053
ccp4: mv CBIN/CCP4_BIN away from /usr/bin (was: sci-chemistry/ccp4i: incomplete/erroneous rename patches)
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[patch]
Updated 6.1.3-rename-truncate.patch.
6.1.3-rename-truncate.patch (text/plain), 3.45 KB, created by
Johan Hattne
on 2010-04-09 08:56:53 UTC
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Description:
Updated 6.1.3-rename-truncate.patch.
Filename:
MIME Type:
Creator:
Johan Hattne
Created:
2010-04-09 08:56:53 UTC
Size:
3.45 KB
patch
obsolete
>--- ccp4i/crank/plugins/prep/crank_prep.tcl.orig 2010-04-08 20:32:42.646610752 -0500 >+++ ccp4i/crank/plugins/prep/crank_prep.tcl 2010-04-08 20:35:35.837433887 -0500 >@@ -226,7 +226,7 @@ > set script "$script\n$labout" > set script "$script\nEND\n" > >- set run_command "truncate $command << \"$script\"" >+ set run_command "ftruncate $command << \"$script\"" > puts $run_command > catch {eval exec $run_command } output > puts $output >--- ccp4i/scripts/dtrek2mtz.script.orig 2010-04-08 20:33:33.605970391 -0500 >+++ ccp4i/scripts/dtrek2mtz.script 2010-04-08 20:39:04.430810978 -0500 >@@ -36,7 +36,7 @@ > set HKL_TRUNCATE [GetTmpFileName -ext mtz] > > CreateComScript truncate truncate_script >- set cmd "[BinPath truncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\"" >+ set cmd "[BinPath ftruncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\"" > set status [Execute $cmd $truncate_script program_status report] > > HandleHarvestFile $HARVEST_MODE $HARVEST_PNAME $HARVEST_DNAME truncate >--- ccp4i/scripts/import_scaled.script.orig 2010-04-08 20:33:14.966204443 -0500 >+++ ccp4i/scripts/import_scaled.script 2010-04-08 20:37:27.855025229 -0500 >@@ -62,7 +62,7 @@ > > } else { > CreateComScript truncate truncate_script >- set cmd "[BinPath truncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\"" >+ set cmd "[BinPath ftruncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\"" > set status [Execute $cmd $truncate_script program_status report] > > HandleHarvestFile $HARVEST_MODE $HARVEST_PNAME $HARVEST_DNAME truncate >--- ccp4i/scripts/import.script.orig 2010-04-08 20:33:56.376683987 -0500 >+++ ccp4i/scripts/import.script 2010-04-08 20:40:43.076571264 -0500 >@@ -144,7 +144,7 @@ > > set truncatemtz [GetTmpFileName -ext mtz ] > CreateComScript truncate truncate_script >- set cmd "[BinPath truncate] HKLIN \"$tmpmtz\" HKLOUT \"$truncatemtz\"" >+ set cmd "[BinPath ftruncate] HKLIN \"$tmpmtz\" HKLOUT \"$truncatemtz\"" > set status [Execute $cmd $truncate_script program_status report] > > >--- ccp4i/scripts/scala.script.orig 2010-04-08 20:33:25.337079512 -0500 >+++ ccp4i/scripts/scala.script 2010-04-08 20:38:31.298227368 -0500 >@@ -275,7 +275,7 @@ > > } else { > CreateComScript truncate truncate_script >- set cmd "[BinPath truncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\"" >+ set cmd "[BinPath ftruncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\"" > set status [Execute $cmd $truncate_script $LOG_FILE program_status report ] > } > >--- ccp4i/scripts/scalepack2mtz.script.orig 2010-04-08 20:33:03.301350949 -0500 >+++ ccp4i/scripts/scalepack2mtz.script 2010-04-08 20:36:24.269824875 -0500 >@@ -35,7 +35,7 @@ > > set HKL_TRUNCATE [GetTmpFileName -ext mtz] > CreateComScript truncate truncate_script >- set cmd "[BinPath truncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\"" >+ set cmd "[BinPath ftruncate] HKLIN \"$HKLTMP\" HKLOUT \"$HKL_TRUNCATE\"" > set status [Execute $cmd $truncate_script program_status report] > > HandleHarvestFile $HARVEST_MODE $HARVEST_PNAME $HARVEST_DNAME truncate >--- ccp4i/scripts/truncate.script.orig 2010-04-08 20:33:46.150812263 -0500 >+++ ccp4i/scripts/truncate.script 2010-04-08 20:39:54.085186884 -0500 >@@ -45,7 +45,7 @@ > > CreateComScript truncate truncate_script > >- set cmd "[BinPath truncate] HKLIN \"$HKLIN\"" >+ set cmd "[BinPath ftruncate] HKLIN \"$HKLIN\"" > if { ![StringSame $INPUT_DATA AMPLITUDES] } { > append cmd " HKLOUT \"$HKL_TRUNCATE\"" > }
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bug 314053
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227089
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227091
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