/var/tmp/portage/dev-java/hdf-java-2.6.1/temp/build.log

build.log (text/plain), 6.98 KB, created by Juergen Rose on 2010-03-24 20:41:57 UTC

 [32;01m*[0m CPV:  dev-java/hdf-java-2.6.1
 [32;01m*[0m REPO: science
 [32;01m*[0m USE:  amd64 doc elibc_glibc examples hdf kernel_linux multilib userland_GNU
 [32;01m*[0m Using: icedtea6
>>> Unpacking source...
>>> Unpacking hdf-java-2.6.1-src.tar to /var/tmp/portage/dev-java/hdf-java-2.6.1/work
>>> Source unpacked in /var/tmp/portage/dev-java/hdf-java-2.6.1/work
>>> Preparing source in /var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java ...
 [32;01m*[0m Applying hdf-java-2.6.1-shared.patch ...
[A[143C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running eautoreconf in '/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java' ...
 [32;01m*[0m Running aclocal ...
[A[143C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf ...
[A[143C  [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java ...
 * econf: updating hdf-java/Config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating hdf-java/Config/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --with-libjpeg=/usr/include,/usr/lib64 --with-hdf4=/usr/include,/usr/lib64 --with-libz=/usr/include,/usr/lib64 --with-libsz=/usr/include,/usr/lib64 --with-hdf5=/usr/include,/usr/lib64 --with-jdk=/usr/lib/icedtea6/include,/usr/lib/icedtea6/jre/lib
checking if tr works... yes
checking for gawk... gawk
checking if expr works... yes
checking for x86_64-pc-linux-gnu-gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking how to run the C preprocessor... mpicc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for ceil in -lm... yes
checking for rm... /bin/rm
checking for find... /usr/bin/find
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
FYI the target here is: x86_64-pc-linux-gnu
checking gzip compression... yes
zlib found: -L/usr/lib64 -lz
checking jpeg compression... yes
jpeg found: -L/usr/lib64 -ljpeg
checking szip compression... yes
szlib found: -L/usr/lib64 -lsz
checking HDF4 library... yes
HDF4 found: /usr/lib64
checking dependencies for HDF4 library... OK
checking HDF5 library... yes
HDF5 found: /usr/lib64
checking dependencies for HDF5 library... OK
checking HDF4to5 library... no
checking jni.h usability... yes
checking jni.h presence... yes
checking for jni.h... yes
checking for java... /usr/lib/icedtea6/bin/java
checking for javac... /usr/lib/icedtea6/bin/javac
checking for javadoc... /usr/lib/icedtea6/bin/javadoc
checking for jar... /usr/lib/icedtea6/bin/jar
configure: creating ./config.status
config.status: creating Makefile
config.status: creating native/Makefile
config.status: creating native/hdflib/Makefile
config.status: creating native/hdf5lib/Makefile
config.status: creating bin/hdfview.sh
config.status: creating test/linktest/Makefile
config.status: creating test/linktest/testlink
config.status: creating test/linktest/testh4link
config.status: creating test/Makefile
config.status: creating test/object/Makefile
config.status: creating test/object/testh4file.sh
config.status: creating test/object/testh5file.sh
config.status: creating test/object/runtests.sh
config.status: creating test/h5/TestHDF5.sh
config.status: creating test/object/TestH5Object.sh
config.status: creating test/object/TestH5Table.sh
config.status: creating test/object/TestH5MemoryLeak.sh
config.status: creating test/unittests/Makefile
config.status: creating test/unittests/unittests.sh
config.status: creating examples/Makefile
config.status: creating examples/intro/Makefile
config.status: creating examples/datasets/Makefile
config.status: creating examples/datatypes/Makefile
config.status: creating examples/groups/Makefile
config.status: creating examples/runExample.sh
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java ...
make -j1 -j1 
cd native; \
	make 
make[1]: Entering directory `/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java/native'
make[2]: Entering directory `/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java/native'
cd hdflib; \
	make ; 
make[3]: Entering directory `/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java/native/hdflib'
mpicc -shared -Dx86_64 -fPIC  -I. -I/usr/lib/icedtea6/include -I/usr/lib/icedtea6/include/linux -I/usr/include   -c -o hdfstructsutil.o hdfstructsutil.c
hdfstructsutil.c: In function 'getChunkInfo':
hdfstructsutil.c:412: error: 'MAX_VAR_DIMS' undeclared (first use in this function)
hdfstructsutil.c:412: error: (Each undeclared identifier is reported only once
hdfstructsutil.c:412: error: for each function it appears in.)
hdfstructsutil.c: In function 'makeChunkInfo':
hdfstructsutil.c:503: error: 'MAX_VAR_DIMS' undeclared (first use in this function)
make[3]: *** [hdfstructsutil.o] Error 1
make[3]: Leaving directory `/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java/native/hdflib'
make[2]: *** [do-hdflib] Error 2
make[2]: Leaving directory `/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java/native'
make[1]: *** [hdflib] Error 2
make[1]: Leaving directory `/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java/native'
make: *** [natives] Error 2
 [31;01m*[0m ERROR: dev-java/hdf-java-2.6.1 failed:
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  54:  Called src_compile
 [31;01m*[0m   environment, line 4794:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       emake -j1 || die "emake failed"
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =dev-java/hdf-java-2.6.1',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =dev-java/hdf-java-2.6.1'.
 [31;01m*[0m This ebuild is from an overlay named 'science': '/var/lib/layman/science/'
!!! When you file a bug report, please include the following information:
GENTOO_VM=icedtea6  CLASSPATH="" JAVA_HOME="/usr/lib/icedtea6"
JAVACFLAGS="-source 1.5 -target 1.5" COMPILER=""
and of course, the output of emerge --info
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/dev-java/hdf-java-2.6.1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/dev-java/hdf-java-2.6.1/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java'