--- ncbi_cxx--May_15_2009.orig/src/build-system/Makefile.mk.in 2009-02-09 23:05:33.000000000 +0100 +++ ncbi_cxx--May_15_2009/src/build-system/Makefile.mk.in 2010-02-05 18:33:36.706345938 +0100 @@ -547,7 +547,7 @@ ################################# # Useful sets of object libraries # Interdependent sequence libraries + seqcode. Does not include seqset. -COMPRESS_LDEP = $(CMPRS_LIB) +COMPRESS_LDEP = $(CMPRS_LIB) xutil xncbi COMPRESS_LIBS = xcompress $(COMPRESS_LDEP) GENBANK_LDEP = \ --- ncbi_cxx--May_15_2009.orig/src/util/compress/Makefile.compress.lib 2007-03-20 14:43:14.000000000 +0100 +++ ncbi_cxx--May_15_2009/src/util/compress/Makefile.compress.lib 2010-02-05 18:52:01.304346011 +0100 @@ -4,7 +4,7 @@ LIB = xcompress -DLL_LIB = -#$(COMPRESS_LDEP) +DLL_LIB = $(COMPRESS_LDEP) +LIBS = $(CMPRS_LIBS) CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE) --- ncbi_cxx--May_15_2009.orig/src/serial/Makefile.serial.lib 2010-02-05 19:06:59.489470484 +0100 +++ ncbi_cxx--May_15_2009/src/serial/Makefile.serial.lib 2010-02-05 19:09:46.792346073 +0100 @@ -17,3 +17,5 @@ objostrjson serializable serialobject pathhook LIB = xser + +DLL_LIB = xutil xncbi --- ncbi_cxx--May_15_2009.orig/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib 2010-02-05 19:06:59.562470396 +0100 +++ ncbi_cxx--May_15_2009/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib 2010-02-05 19:45:55.634246596 +0100 @@ -12,4 +12,4 @@ LIB_OR_DLL = both # Dependencies for shared library -DLL_LIB = +DLL_LIB = xcompress --- ncbi_cxx--May_15_2009.orig/src/objtools/readers/Makefile.xobjread.lib 2010-02-05 19:06:59.565470455 +0100 +++ ncbi_cxx--May_15_2009/src/objtools/readers/Makefile.xobjread.lib 2010-02-05 19:38:29.041345917 +0100 @@ -8,4 +8,4 @@ wiggle_reader wiggle_data gff3_reader \ ucscid idmap idmapper idmapper_builtin idmapper_user idmapper_site \ idmapper_database -DLL_LIB = creaders +DLL_LIB = creaders seq seqset --- ncbi_cxx--May_15_2009.orig/src/objects/seq/Makefile.seq.lib 2010-02-05 19:06:59.596470422 +0100 +++ ncbi_cxx--May_15_2009/src/objects/seq/Makefile.seq.lib 2010-02-05 19:34:58.457345966 +0100 @@ -10,3 +10,5 @@ SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \ seq_id_tree seq_id_handle seq_id_mapper \ seq_loc_mapper_base seq_align_mapper_base + +DLL_LIB = biblio general pub seqcode sequtil xncbi --- ncbi_cxx--May_15_2009.orig/src/objects/pub/Makefile.pub.lib 2010-02-05 19:06:59.599470242 +0100 +++ ncbi_cxx--May_15_2009/src/objects/pub/Makefile.pub.lib 2010-02-05 19:32:45.672220634 +0100 @@ -1,2 +1,4 @@ LIB = pub SRC = pub__ pub___ + +DLL_LIB = medline --- ncbi_cxx--May_15_2009.orig/src/objects/general/Makefile.general.lib 2010-02-05 19:06:59.617470483 +0100 +++ ncbi_cxx--May_15_2009/src/objects/general/Makefile.general.lib 2010-02-05 20:46:39.666864581 +0100 @@ -1,2 +1,4 @@ LIB = general SRC = general__ general___ uoconv + +DLL_LIB = xsoap xser --- ncbi_cxx--May_15_2009.orig/src/objects/omssa/Makefile.omssa.lib 2010-02-05 19:06:59.623470270 +0100 +++ ncbi_cxx--May_15_2009/src/objects/omssa/Makefile.omssa.lib 2010-02-05 20:37:31.311345829 +0100 @@ -2,3 +2,5 @@ LIB = omssa SRC = omssa__ omssa___ + +DLL_LIB = seq --- ncbi_cxx--May_15_2009.orig/src/algo/blast/api/Makefile.xblast.lib 2010-02-05 19:06:59.662470313 +0100 +++ ncbi_cxx--May_15_2009/src/algo/blast/api/Makefile.xblast.lib 2010-02-05 20:24:01.136345928 +0100 @@ -73,7 +73,8 @@ LIB = xblast -DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS) +DLL_LIB = xalgodustmask xalgowinmask xobjutil xnetblast xnetblastcli blastdb composition_adjustment \ + blast tables xalgoblastdbindex_search xalgoblastdbindex $(OBJMGR_LIBS) CFLAGS = $(FAST_CFLAGS) # Strict gcc flags --- ncbi_cxx--May_15_2009.orig/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib 2010-02-05 19:06:59.678470524 +0100 +++ ncbi_cxx--May_15_2009/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib 2010-02-05 20:26:18.321345834 +0100 @@ -12,3 +12,4 @@ LDFLAGS = $(FAST_LDFLAGS) ASN_DEP = seqset +DLL_LIB = xobjread --- ncbi_cxx--May_15_2009.orig/src/objects/biblio/Makefile.biblio.lib 2004-02-24 16:53:48.000000000 +0100 +++ ncbi_cxx--May_15_2009/src/objects/biblio/Makefile.biblio.lib 2010-02-05 21:14:51.670345866 +0100 @@ -1,2 +1,4 @@ LIB = biblio SRC = biblio__ biblio___ label_util + +DLL_LIB = general --- ncbi_cxx--May_15_2009.orig/src/objects/medline/Makefile.medline.lib 2003-06-05 22:21:46.000000000 +0200 +++ ncbi_cxx--May_15_2009/src/objects/medline/Makefile.medline.lib 2010-02-05 21:11:34.826345881 +0100 @@ -1,2 +1,4 @@ LIB = medline SRC = medline__ medline___ + +DLL_LIB = biblio --- ncbi_cxx--May_15_2009.orig/src/objects/Makefile.in 2009-04-23 17:15:20.000000000 +0200 +++ ncbi_cxx--May_15_2009/src/objects/Makefile.in 2010-02-05 21:47:26.176345856 +0100 @@ -5,8 +5,8 @@ USR_PROJ = sources -SUB_PROJ = tinyseq omssa general biblio medline pub pubmed \ - featdef seqcode seqset seq genomecoll biotree \ +SUB_PROJ = tinyseq general biblio medline pub pubmed \ + featdef seqcode seqset seq omssa genomecoll biotree \ id1 id2 gbseq insdseq entrez2 submit medlars mla proj mmdb \ cdd cn3d scoremat ncbimime access objprt docsum taxon1 mim \ entrezgene blast blastdb blastxml pcsubstance pcassay remap \