This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by netCDF configure 4.0.1, which was generated by GNU Autoconf 2.65. Invocation command line was $ ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --docdir=/usr/share/doc/netcdf-4.0.1 --enable-shared --enable-f77 --enable-f90 --enable-separate-fortran --enable-netcdf-4 --enable-ncgen4 --enable-docs-install --with-hdf5=/usr --with-zlib=/usr --with-szlib=/usr ## --------- ## ## Platform. ## ## --------- ## hostname = orca uname -m = x86_64 uname -r = 2.6.32-gentoo-r2 uname -s = Linux uname -v = #1 SMP Fri Jan 22 11:03:01 CET 2010 /usr/bin/uname -p = Intel(R) Xeon(R) CPU W3520 @ 2.67GHz /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib64/portage/bin/ebuild-helpers PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /opt/bin PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 PATH: /usr/qt/3/bin PATH: /usr/lib64/subversion/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3194: netCDF 4.0.1 configure:3228: checking build system type configure:3242: result: x86_64-pc-linux-gnu configure:3262: checking host system type configure:3275: result: x86_64-pc-linux-gnu configure:3320: checking for a BSD-compatible install configure:3388: result: /usr/bin/install -c configure:3399: checking whether build environment is sane configure:3436: result: yes configure:3563: checking for a thread-safe mkdir -p configure:3602: result: /bin/mkdir -p configure:3615: checking for gawk configure:3631: found /usr/bin/gawk configure:3642: result: gawk configure:3653: checking whether make sets $(MAKE) configure:3675: result: yes configure:3759: checking user options configure:3802: checking whether CXX is set to '' configure:3806: result: no configure:3810: checking whether FC is set to '' configure:3814: result: no configure:3818: checking whether F90 is set to '' configure:3822: result: no configure:3826: checking whether a NCIO_MINBLOCKSIZE was specified configure:3836: result: 256 configure:3846: checking whether this is a netCDF-4.x build configure:3854: result: yes configure:3858: checking whether extra valgrind tests should be run configure:3866: result: no configure:3872: Processing NetCDF-4 options. configure:3877: checking whether netCDF-4 is to be built configure:3885: result: yes configure:3897: checking whether new netCDF-4 C++ API is to be built configure:3905: result: no configure:3909: checking whether HDF5 should do data conversions configure:3917: result: no configure:3926: checking whether extra example tests should be run configure:3934: result: no configure:3938: checking whether parallel IO tests should be run configure:3946: result: no configure:3950: checking whether a location for the HDF5 library was specified configure:3958: result: /usr configure:3964: checking whether a location for the ZLIB library was specified configure:3972: result: /usr configure:3978: checking whether a location for the SZLIB library was specified configure:3986: result: /usr configure:3992: checking whether a default cache size for HDF5 was specified configure:4002: result: 32000000 configure:4011: checking whether a default cache maximum number of elements for HDF5 was specified configure:4021: result: 1000 configure:4030: checking whether a default cache preemption for HDF5 was specified configure:4040: result: 0.75 configure:4049: checking whether netCDF-4 logging is enabled configure:4057: result: no configure:4075: checking whether DAP client is to be built configure:4083: result: no configure:4105: checking whether dap remote testing should be enabled configure:4113: result: no configure:4216: checking whether netCDF extra tests should be run (developers only) configure:4224: result: no configure:4241: checking whether documentation is to be installed configure:4249: result: yes configure:4261: checking whether Fortran compiler(s) should be tested during configure configure:4269: result: yes configure:4273: checking whether FFIO will be used configure:4281: result: no configure:4297: checking whether to skip C++, F77, or F90 APIs if compiler is broken configure:4305: result: yes configure:4309: checking whether only the C library is desired configure:4317: result: no configure:4336: checking whether examples should be built configure:4344: result: yes configure:4348: checking whether F77 API is desired configure:4357: result: yes configure:4362: checking whether F90 API is desired configure:4372: result: yes configure:4376: checking whether fortran type sizes should be checked configure:4384: result: yes configure:4390: checking whether C API is desired configure:4398: result: yes configure:4405: checking where to get netCDF C-only library for separate fortran libraries configure:4421: result: configure:4433: checking whether CXX API is desired configure:4442: result: yes configure:4451: checking whether v2 netCDF API should be built configure:4459: result: yes configure:4478: checking whether the ncgen/ncdump should be built configure:4487: result: yes configure:4499: checking whether large file (> 2GB) tests should be run configure:4507: result: no configure:4524: checking whether benchmaks should be run (experimental) configure:4532: result: no configure:4544: checking whether extreme numbers should be used in tests configure:4559: result: yes configure:4571: checking where to put large temp files if large file tests are run configure:4580: result: . configure:4591: checking whether a win32 DLL is desired configure:4599: result: no configure:4621: checking whether separate fortran libs are desired configure:4630: result: yes configure:4698: finding C compiler configure:4711: checking for x86_64-pc-linux-gnu-xlc configure:4741: result: no configure:4711: checking for x86_64-pc-linux-gnu-cc configure:4741: result: no configure:4711: checking for x86_64-pc-linux-gnu-c89 configure:4741: result: no configure:4711: checking for x86_64-pc-linux-gnu-acc configure:4741: result: no configure:4711: checking for x86_64-pc-linux-gnu-gcc configure:4727: found /usr/bin/x86_64-pc-linux-gnu-gcc configure:4738: result: x86_64-pc-linux-gnu-gcc configure:4813: checking for C compiler version configure:4822: x86_64-pc-linux-gnu-gcc --version >&5 x86_64-pc-linux-gnu-gcc (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4833: $? = 0 configure:4822: x86_64-pc-linux-gnu-gcc -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5' Thread model: posix gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) configure:4833: $? = 0 configure:4822: x86_64-pc-linux-gnu-gcc -V >&5 x86_64-pc-linux-gnu-gcc: '-V' option must have argument configure:4833: $? = 1 configure:4822: x86_64-pc-linux-gnu-gcc -qversion >&5 x86_64-pc-linux-gnu-gcc: unrecognized option '-qversion' x86_64-pc-linux-gnu-gcc: no input files configure:4833: $? = 1 configure:4853: checking whether the C compiler works configure:4875: x86_64-pc-linux-gnu-gcc -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:4879: $? = 0 configure:4928: result: yes configure:4931: checking for C compiler default output file name configure:4933: result: a.out configure:4939: checking for suffix of executables configure:4946: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:4950: $? = 0 configure:4972: result: configure:4994: checking whether we are cross compiling configure:5002: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:5006: $? = 0 configure:5013: ./conftest configure:5017: $? = 0 configure:5032: result: no configure:5037: checking for suffix of object files configure:5059: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:5063: $? = 0 configure:5084: result: o configure:5088: checking whether we are using the GNU C compiler configure:5107: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:5107: $? = 0 configure:5116: result: yes configure:5125: checking whether x86_64-pc-linux-gnu-gcc accepts -g configure:5145: x86_64-pc-linux-gnu-gcc -c -g conftest.c >&5 configure:5145: $? = 0 configure:5186: result: yes configure:5203: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89 configure:5267: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:5267: $? = 0 configure:5280: result: none needed configure:5311: checking for style of include used by make configure:5339: result: GNU configure:5364: checking dependency style of x86_64-pc-linux-gnu-gcc configure:5474: result: gcc3 configure:5490: checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together configure:5521: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o >&5 configure:5525: $? = 0 configure:5531: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o >&5 configure:5535: $? = 0 configure:5546: cc -c conftest.c >&5 configure:5550: $? = 0 configure:5558: cc -c conftest.c -o conftest2.o >&5 configure:5562: $? = 0 configure:5568: cc -c conftest.c -o conftest2.o >&5 configure:5572: $? = 0 configure:5590: result: yes configure:5616: checking for an ANSI C-conforming const configure:5681: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:5681: $? = 0 configure:5688: result: yes configure:5717: finding Fortran compiler (will not be used if Fortran API is not desired) configure:5953: checking for x86_64-pc-linux-gnu-xlf90 configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-fort configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-xlf95 configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-ifort configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-ifc configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-efc configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-pgf95 configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-lf95 configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-g95 configure:5983: result: no configure:5953: checking for x86_64-pc-linux-gnu-gfortran configure:5969: found /usr/bin/x86_64-pc-linux-gnu-gfortran configure:5980: result: x86_64-pc-linux-gnu-gfortran configure:6050: checking for Fortran compiler version configure:6059: x86_64-pc-linux-gnu-gfortran --version >&5 GNU Fortran (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4 Copyright (C) 2008 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:6070: $? = 0 configure:6059: x86_64-pc-linux-gnu-gfortran -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5' Thread model: posix gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) configure:6070: $? = 0 configure:6059: x86_64-pc-linux-gnu-gfortran -V >&5 x86_64-pc-linux-gnu-gfortran: '-V' option must have argument configure:6070: $? = 1 configure:6059: x86_64-pc-linux-gnu-gfortran -qversion >&5 x86_64-pc-linux-gnu-gfortran: unrecognized option '-qversion' x86_64-pc-linux-gnu-gfortran: no input files configure:6070: $? = 1 configure:6079: checking whether we are using the GNU Fortran compiler configure:6092: x86_64-pc-linux-gnu-gfortran -c conftest.F >&5 configure:6092: $? = 0 configure:6101: result: yes configure:6107: checking whether x86_64-pc-linux-gnu-gfortran accepts -g configure:6118: x86_64-pc-linux-gnu-gfortran -c -g conftest.f >&5 configure:6118: $? = 0 configure:6126: result: yes configure:6173: checking for x86_64-pc-linux-gnu-xlf configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-fort configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-xlf95 configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-ifort configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-ifc configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-efc configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-pgf77 configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-lf95 configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-g95 configure:6203: result: no configure:6173: checking for x86_64-pc-linux-gnu-gfortran configure:6189: found /usr/bin/x86_64-pc-linux-gnu-gfortran configure:6200: result: x86_64-pc-linux-gnu-gfortran configure:6270: checking for Fortran 77 compiler version configure:6279: x86_64-pc-linux-gnu-gfortran --version >&5 GNU Fortran (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4 Copyright (C) 2008 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:6290: $? = 0 configure:6279: x86_64-pc-linux-gnu-gfortran -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5' Thread model: posix gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) configure:6290: $? = 0 configure:6279: x86_64-pc-linux-gnu-gfortran -V >&5 x86_64-pc-linux-gnu-gfortran: '-V' option must have argument configure:6290: $? = 1 configure:6279: x86_64-pc-linux-gnu-gfortran -qversion >&5 x86_64-pc-linux-gnu-gfortran: unrecognized option '-qversion' x86_64-pc-linux-gnu-gfortran: no input files configure:6290: $? = 1 configure:6299: checking whether we are using the GNU Fortran 77 compiler configure:6312: x86_64-pc-linux-gnu-gfortran -c conftest.F >&5 configure:6312: $? = 0 configure:6321: result: yes configure:6327: checking whether x86_64-pc-linux-gnu-gfortran accepts -g configure:6338: x86_64-pc-linux-gnu-gfortran -c -g conftest.f >&5 configure:6338: $? = 0 configure:6346: result: yes configure:6392: setting up Fortran 90 configure:6411: checking for Fortran flag to compile .f90 files configure:6427: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f90 >&5 configure:6427: $? = 0 configure:6436: result: none configure:6464: checking fortran 90 modules inclusion flag configure:6489: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f90 >&5 configure:6489: $? = 0 configure:6506: x86_64-pc-linux-gnu-gfortran -c -g -O2 -Itmpdir_0 conftest.f90 >&5 configure:6506: $? = 0 configure:6525: result: -I configure:6537: checking if Fortran compiler can handle Fortran-90 configure:6545: x86_64-pc-linux-gnu-gfortran -g -O2 conftest.f90 configure:6548: $? = 0 configure:6560: result: yes configure:6569: finding C++ compiler (will not be used if C++ API is not desired) configure:6593: checking for x86_64-pc-linux-gnu-cl configure:6623: result: no configure:6593: checking for x86_64-pc-linux-gnu-KCC configure:6623: result: no configure:6593: checking for x86_64-pc-linux-gnu-CC configure:6623: result: no configure:6593: checking for x86_64-pc-linux-gnu-cxx configure:6623: result: no configure:6593: checking for x86_64-pc-linux-gnu-cc++ configure:6623: result: no configure:6593: checking for x86_64-pc-linux-gnu-xlC configure:6623: result: no configure:6593: checking for x86_64-pc-linux-gnu-aCC configure:6623: result: no configure:6593: checking for x86_64-pc-linux-gnu-c++ configure:6609: found /usr/bin/x86_64-pc-linux-gnu-c++ configure:6620: result: x86_64-pc-linux-gnu-c++ configure:6691: checking for C++ compiler version configure:6700: x86_64-pc-linux-gnu-c++ --version >&5 x86_64-pc-linux-gnu-c++ (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6711: $? = 0 configure:6700: x86_64-pc-linux-gnu-c++ -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5' Thread model: posix gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) configure:6711: $? = 0 configure:6700: x86_64-pc-linux-gnu-c++ -V >&5 x86_64-pc-linux-gnu-c++: '-V' option must have argument configure:6711: $? = 1 configure:6700: x86_64-pc-linux-gnu-c++ -qversion >&5 x86_64-pc-linux-gnu-c++: unrecognized option '-qversion' x86_64-pc-linux-gnu-c++: no input files configure:6711: $? = 1 configure:6715: checking whether we are using the GNU C++ compiler configure:6734: x86_64-pc-linux-gnu-c++ -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.cpp >&5 configure:6734: $? = 0 configure:6743: result: yes configure:6752: checking whether x86_64-pc-linux-gnu-c++ accepts -g configure:6772: x86_64-pc-linux-gnu-c++ -c -g conftest.cpp >&5 configure:6772: $? = 0 configure:6813: result: yes configure:6838: checking dependency style of x86_64-pc-linux-gnu-c++ configure:6948: result: gcc3 configure:7019: setting up libtool configure:7048: checking for a sed that does not truncate output configure:7112: result: /bin/sed configure:7130: checking for grep that handles long lines and -e configure:7188: result: /bin/grep configure:7193: checking for egrep configure:7255: result: /bin/grep -E configure:7260: checking for fgrep configure:7322: result: /bin/grep -F configure:7357: checking for ld used by x86_64-pc-linux-gnu-gcc configure:7424: result: /usr/x86_64-pc-linux-gnu/bin/ld configure:7431: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld configure:7446: result: yes configure:7458: checking for BSD- or MS-compatible name lister (nm) configure:7507: result: /usr/bin/nm -B configure:7625: checking the name lister (/usr/bin/nm -B) interface configure:7632: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:7635: /usr/bin/nm -B "conftest.o" configure:7638: output 0000000000000000 B some_variable configure:7645: result: BSD nm configure:7648: checking whether ln -s works configure:7652: result: yes configure:7660: checking the maximum length of command line arguments configure:7780: result: 1572864 configure:7797: checking whether the shell understands some XSI constructs configure:7807: result: yes configure:7811: checking whether the shell understands "+=" configure:7817: result: yes configure:7852: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files configure:7859: result: -r configure:7888: checking for x86_64-pc-linux-gnu-objdump configure:7904: found /usr/bin/x86_64-pc-linux-gnu-objdump configure:7915: result: x86_64-pc-linux-gnu-objdump configure:7987: checking how to recognize dependent libraries configure:8183: result: pass_all configure:8203: checking for x86_64-pc-linux-gnu-ar configure:8219: found /usr/bin/x86_64-pc-linux-gnu-ar configure:8230: result: x86_64-pc-linux-gnu-ar configure:8308: checking for x86_64-pc-linux-gnu-strip configure:8324: found /usr/bin/x86_64-pc-linux-gnu-strip configure:8335: result: x86_64-pc-linux-gnu-strip configure:8407: checking for x86_64-pc-linux-gnu-ranlib configure:8423: found /usr/bin/x86_64-pc-linux-gnu-ranlib configure:8434: result: x86_64-pc-linux-gnu-ranlib configure:8564: checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object configure:8682: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:8685: $? = 0 configure:8689: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:8692: $? = 0 configure:8746: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c conftstm.o >&5 configure:8749: $? = 0 configure:8787: result: ok configure:8882: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:8885: $? = 0 configure:9595: checking how to run the C preprocessor configure:9626: x86_64-pc-linux-gnu-gcc -E conftest.c configure:9626: $? = 0 configure:9640: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:20:28: error: ac_nonexistent.h: No such file or directory configure:9640: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | /* end confdefs.h. */ | #include configure:9665: result: x86_64-pc-linux-gnu-gcc -E configure:9685: x86_64-pc-linux-gnu-gcc -E conftest.c configure:9685: $? = 0 configure:9699: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:20:28: error: ac_nonexistent.h: No such file or directory configure:9699: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | /* end confdefs.h. */ | #include configure:9728: checking for ANSI C header files configure:9748: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9748: $? = 0 configure:9821: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:9821: $? = 0 configure:9821: ./conftest configure:9821: $? = 0 configure:9832: result: yes configure:9845: checking for sys/types.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9845: checking for sys/stat.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9845: checking for stdlib.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9845: checking for string.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9845: checking for memory.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9845: checking for strings.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9845: checking for inttypes.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9845: checking for stdint.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9845: checking for unistd.h configure:9845: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9845: $? = 0 configure:9845: result: yes configure:9860: checking for dlfcn.h configure:9860: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:9860: $? = 0 configure:9860: result: yes configure:9985: checking for C++ compiler version configure:9994: x86_64-pc-linux-gnu-c++ --version >&5 x86_64-pc-linux-gnu-c++ (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4 Copyright (C) 2008 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:10005: $? = 0 configure:9994: x86_64-pc-linux-gnu-c++ -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5' Thread model: posix gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) configure:10005: $? = 0 configure:9994: x86_64-pc-linux-gnu-c++ -V >&5 x86_64-pc-linux-gnu-c++: '-V' option must have argument configure:10005: $? = 1 configure:9994: x86_64-pc-linux-gnu-c++ -qversion >&5 x86_64-pc-linux-gnu-c++: unrecognized option '-qversion' x86_64-pc-linux-gnu-c++: no input files configure:10005: $? = 1 configure:10009: checking whether we are using the GNU C++ compiler configure:10037: result: yes configure:10046: checking whether x86_64-pc-linux-gnu-c++ accepts -g configure:10107: result: yes configure:10132: checking dependency style of x86_64-pc-linux-gnu-c++ configure:10242: result: gcc3 configure:10265: checking how to run the C++ preprocessor configure:10292: x86_64-pc-linux-gnu-c++ -E conftest.cpp configure:10292: $? = 0 configure:10306: x86_64-pc-linux-gnu-c++ -E conftest.cpp conftest.cpp:31:28: error: ac_nonexistent.h: No such file or directory configure:10306: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:10331: result: x86_64-pc-linux-gnu-c++ -E configure:10351: x86_64-pc-linux-gnu-c++ -E conftest.cpp configure:10351: $? = 0 configure:10365: x86_64-pc-linux-gnu-c++ -E conftest.cpp conftest.cpp:31:28: error: ac_nonexistent.h: No such file or directory configure:10365: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:10409: checking for x86_64-pc-linux-gnu-g77 configure:10436: result: x86_64-pc-linux-gnu-gfortran configure:10506: checking for Fortran 77 compiler version configure:10515: x86_64-pc-linux-gnu-gfortran --version >&5 GNU Fortran (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4 Copyright (C) 2008 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:10526: $? = 0 configure:10515: x86_64-pc-linux-gnu-gfortran -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5' Thread model: posix gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) configure:10526: $? = 0 configure:10515: x86_64-pc-linux-gnu-gfortran -V >&5 x86_64-pc-linux-gnu-gfortran: '-V' option must have argument configure:10526: $? = 1 configure:10515: x86_64-pc-linux-gnu-gfortran -qversion >&5 x86_64-pc-linux-gnu-gfortran: unrecognized option '-qversion' x86_64-pc-linux-gnu-gfortran: no input files configure:10526: $? = 1 configure:10535: checking whether we are using the GNU Fortran 77 compiler configure:10557: result: yes configure:10563: checking whether x86_64-pc-linux-gnu-gfortran accepts -g configure:10582: result: yes configure:10628: checking for x86_64-pc-linux-gnu-gfortran configure:10655: result: x86_64-pc-linux-gnu-gfortran configure:10725: checking for Fortran compiler version configure:10734: x86_64-pc-linux-gnu-gfortran --version >&5 GNU Fortran (Gentoo 4.3.4 p1.0, pie-10.1.5) 4.3.4 Copyright (C) 2008 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:10745: $? = 0 configure:10734: x86_64-pc-linux-gnu-gfortran -v >&5 Using built-in specs. Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --disable-libgcj --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5' Thread model: posix gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) configure:10745: $? = 0 configure:10734: x86_64-pc-linux-gnu-gfortran -V >&5 x86_64-pc-linux-gnu-gfortran: '-V' option must have argument configure:10745: $? = 1 configure:10734: x86_64-pc-linux-gnu-gfortran -qversion >&5 x86_64-pc-linux-gnu-gfortran: unrecognized option '-qversion' x86_64-pc-linux-gnu-gfortran: no input files configure:10745: $? = 1 configure:10754: checking whether we are using the GNU Fortran compiler configure:10776: result: yes configure:10782: checking whether x86_64-pc-linux-gnu-gfortran accepts -g configure:10801: result: yes configure:10973: checking for objdir configure:10988: result: .libs configure:11284: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions configure:11302: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:11306: $? = 0 configure:11319: result: no configure:11339: checking for x86_64-pc-linux-gnu-gcc option to produce PIC configure:11611: result: -fPIC -DPIC configure:11623: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works configure:11641: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -fPIC -DPIC -DPIC conftest.c >&5 configure:11645: $? = 0 configure:11658: result: yes configure:11682: checking if x86_64-pc-linux-gnu-gcc static flag -static works configure:11710: result: yes configure:11725: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o configure:11746: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -o out/conftest2.o conftest.c >&5 configure:11750: $? = 0 configure:11772: result: yes configure:11780: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o configure:11827: result: yes configure:11860: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:12846: result: yes configure:12883: checking whether -lc should be explicitly linked in configure:12888: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:12891: $? = 0 configure:12906: x86_64-pc-linux-gnu-gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:12909: $? = 0 configure:12921: result: no configure:13085: checking dynamic linker characteristics configure:13531: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:13531: $? = 0 configure:13749: result: GNU/Linux ld.so configure:13851: checking how to hardcode library paths into programs configure:13876: result: immediate configure:14396: checking whether stripping libraries is possible configure:14401: result: yes configure:14436: checking if libtool supports shared libraries configure:14438: result: yes configure:14441: checking whether to build shared libraries configure:14462: result: yes configure:14465: checking whether to build static libraries configure:14469: result: yes configure:14619: checking for ld used by x86_64-pc-linux-gnu-c++ configure:14686: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 configure:14693: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld configure:14708: result: yes configure:14763: checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:15676: result: yes configure:15704: x86_64-pc-linux-gnu-c++ -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.cpp >&5 configure:15707: $? = 0 configure:15889: checking for x86_64-pc-linux-gnu-c++ option to produce PIC configure:16206: result: -fPIC -DPIC configure:16215: checking if x86_64-pc-linux-gnu-c++ PIC flag -fPIC -DPIC works configure:16233: x86_64-pc-linux-gnu-c++ -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -fPIC -DPIC -DPIC conftest.cpp >&5 configure:16237: $? = 0 configure:16250: result: yes configure:16271: checking if x86_64-pc-linux-gnu-c++ static flag -static works configure:16299: result: yes configure:16311: checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o configure:16332: x86_64-pc-linux-gnu-c++ -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -o out/conftest2.o conftest.cpp >&5 configure:16336: $? = 0 configure:16358: result: yes configure:16363: checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o configure:16410: result: yes configure:16440: checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:16466: result: yes configure:16603: checking dynamic linker characteristics configure:16997: x86_64-pc-linux-gnu-c++ -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 -Wl,-rpath -Wl,/foo conftest.cpp >&5 configure:16997: $? = 0 configure:17215: result: GNU/Linux ld.so configure:17266: checking how to hardcode library paths into programs configure:17291: result: immediate configure:17432: checking if libtool supports shared libraries configure:17434: result: yes configure:17437: checking whether to build shared libraries configure:17457: result: yes configure:17460: checking whether to build static libraries configure:17464: result: yes configure:17478: checking for x86_64-pc-linux-gnu-gfortran option to produce PIC configure:17750: result: -fPIC configure:17759: checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works configure:17777: x86_64-pc-linux-gnu-gfortran -c -g -O2 -fPIC conftest.f >&5 configure:17781: $? = 0 configure:17794: result: yes configure:17815: checking if x86_64-pc-linux-gnu-gfortran static flag -static works configure:17843: result: yes configure:17855: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o configure:17876: x86_64-pc-linux-gnu-gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:17880: $? = 0 configure:17902: result: yes configure:17907: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o configure:17954: result: yes configure:17984: checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:18957: result: yes configure:19094: checking dynamic linker characteristics configure:19482: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 -Wl,-rpath -Wl,/foo conftest.f >&5 configure:19482: $? = 0 configure:19700: result: GNU/Linux ld.so configure:19751: checking how to hardcode library paths into programs configure:19776: result: immediate configure:19912: checking if libtool supports shared libraries configure:19914: result: yes configure:19917: checking whether to build shared libraries configure:19937: result: yes configure:19940: checking whether to build static libraries configure:19944: result: yes configure:19970: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f90 >&5 configure:19973: $? = 0 configure:20083: checking for x86_64-pc-linux-gnu-gfortran option to produce PIC configure:20355: result: -fPIC configure:20364: checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works configure:20382: x86_64-pc-linux-gnu-gfortran -c -g -O2 -fPIC conftest.f90 >&5 configure:20386: $? = 0 configure:20399: result: yes configure:20420: checking if x86_64-pc-linux-gnu-gfortran static flag -static works configure:20448: result: yes configure:20460: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o configure:20481: x86_64-pc-linux-gnu-gfortran -c -g -O2 -o out/conftest2.o conftest.f90 >&5 configure:20485: $? = 0 configure:20507: result: yes configure:20512: checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o configure:20559: result: yes configure:20589: checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:21562: result: yes configure:21699: checking dynamic linker characteristics configure:22087: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 -Wl,-rpath -Wl,/foo conftest.f90 >&5 configure:22087: $? = 0 configure:22305: result: GNU/Linux ld.so configure:22356: checking how to hardcode library paths into programs configure:22381: result: immediate configure:22429: finding other utilities configure:22435: trying to set fortran flags for this platform configure:22541: checking if we need to set _LARGE_FILES despite results of previous tests configure:22566: result: _LARGE_FILES= configure:22576: checking for special C compiler options needed for large files configure:22621: result: no configure:22627: checking for _FILE_OFFSET_BITS value needed for large files configure:22652: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:22652: $? = 0 configure:22684: result: no configure:22768: displaying some results configure:22774: checking CPPFLAGS configure:22776: result: configure:22778: checking CC CFLAGS configure:22780: result: x86_64-pc-linux-gnu-gcc -march=core2 -msse4 -mcx16 -msahf -O2 -pipe configure:22783: checking type x86_64-pc-linux-gnu-gcc configure:22785: result: x86_64-pc-linux-gnu-gcc is /usr/bin/x86_64-pc-linux-gnu-gcc configure:22788: checking CXX configure:22791: result: x86_64-pc-linux-gnu-c++ configure:22793: checking CXXFLAGS configure:22795: result: -march=core2 -msse4 -mcx16 -msahf -O2 -pipe configure:22798: checking type x86_64-pc-linux-gnu-c++ configure:22800: result: x86_64-pc-linux-gnu-c++ is /usr/bin/x86_64-pc-linux-gnu-c++ configure:22807: checking FC configure:22810: result: x86_64-pc-linux-gnu-gfortran configure:22812: checking FFLAGS configure:22814: result: -g -O2 configure:22817: checking type x86_64-pc-linux-gnu-gfortran configure:22819: result: x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran configure:22826: checking F90 configure:22829: result: x86_64-pc-linux-gnu-gfortran configure:22831: checking FCFLAGS configure:22833: result: -g -O2 configure:22836: checking type x86_64-pc-linux-gnu-gfortran configure:22838: result: x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran configure:22845: checking AR configure:22848: result: x86_64-pc-linux-gnu-ar configure:22850: checking AR_FLAGS configure:22852: result: cru configure:22855: checking type x86_64-pc-linux-gnu-ar configure:22857: result: x86_64-pc-linux-gnu-ar is /usr/bin/x86_64-pc-linux-gnu-ar configure:22864: checking NM configure:22867: result: /usr/bin/nm -B configure:22869: checking NMFLAGS configure:22871: result: configure:22943: checking for /usr/bin/nm configure:22970: result: /usr/bin/nm -B configure:22983: checking nm flags configure:22988: result: configure:23000: checking for C-equivalent to Fortran routine "SUB" configure:23007: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f configure:23010: $? = 0 configure:23020: result: sub_ configure:23040: checking for Fortran "byte" configure:23048: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f configure:23051: $? = 0 configure:23053: result: yes configure:23071: checking for Fortran "integer*2" configure:23079: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f configure:23082: $? = 0 configure:23084: result: yes configure:23111: checking if Fortran "byte" is C "signed char" configure:23121: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23124: $? = 0 configure:23127: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23130: $? = 0 configure:23133: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23136: $? = 0 configure:23139: ./conftest configure:23142: $? = 0 configure:23144: result: yes configure:23178: checking if Fortran "byte" is C "short" configure:23188: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23191: $? = 0 configure:23194: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23197: $? = 0 configure:23200: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23203: $? = 0 configure:23206: ./conftest configure:23209: $? = 1 configure:23222: result: no configure:23245: checking if Fortran "byte" is C "int" configure:23255: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23258: $? = 0 configure:23261: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23264: $? = 0 configure:23267: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23270: $? = 0 configure:23273: ./conftest configure:23276: $? = 1 configure:23289: result: no configure:23312: checking if Fortran "byte" is C "long" configure:23322: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23325: $? = 0 configure:23328: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23331: $? = 0 configure:23334: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23337: $? = 0 configure:23340: ./conftest configure:23343: $? = 1 configure:23356: result: no configure:23383: checking if Fortran "integer*2" is C "short" configure:23393: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23396: $? = 0 configure:23399: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23402: $? = 0 configure:23405: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23408: $? = 0 configure:23411: ./conftest configure:23414: $? = 0 configure:23416: result: yes configure:23450: checking if Fortran "integer*2" is C "int" configure:23460: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23463: $? = 0 configure:23466: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23469: $? = 0 configure:23472: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23475: $? = 0 configure:23478: ./conftest configure:23481: $? = 1 configure:23494: result: no configure:23517: checking if Fortran "integer*2" is C "long" configure:23527: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23530: $? = 0 configure:23533: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23536: $? = 0 configure:23539: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23542: $? = 0 configure:23545: ./conftest configure:23548: $? = 1 configure:23561: result: no configure:23586: checking if Fortran "integer" is C "int" configure:23596: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23599: $? = 0 configure:23602: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23605: $? = 0 configure:23608: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23611: $? = 0 configure:23614: ./conftest configure:23617: $? = 0 configure:23619: result: yes configure:23653: checking if Fortran "real" is C "float" configure:23663: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23666: $? = 0 configure:23669: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23672: $? = 0 configure:23675: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23678: $? = 0 configure:23681: ./conftest configure:23684: $? = 0 configure:23686: result: yes configure:23720: checking if Fortran "doubleprecision" is C "double" configure:23730: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:23733: $? = 0 configure:23736: x86_64-pc-linux-gnu-gfortran -g -O2 -c conftestf.f configure:23739: $? = 0 configure:23742: x86_64-pc-linux-gnu-gfortran -o conftest -g -O2 -Wl,-O1 conftestf.o conftest.o configure:23745: $? = 0 configure:23748: ./conftest configure:23751: $? = 0 configure:23753: result: yes configure:23781: checking for Fortran-equivalent to netCDF "byte" configure:23789: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f configure:23792: $? = 0 configure:23803: result: byte configure:23809: checking for Fortran-equivalent to netCDF "short" configure:23817: x86_64-pc-linux-gnu-gfortran -c -g -O2 conftest.f configure:23820: $? = 0 configure:23831: result: integer*2 configure:23878: checking if Fortran 90 compiler capitalizes .mod filenames configure:23885: x86_64-pc-linux-gnu-gfortran conftest.f90 >&5 /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/libgfortranbegin.a(fmain.o): In function `main': (.text+0x28): undefined reference to `MAIN__' collect2: ld returned 1 exit status configure:23888: $? = 1 configure:23896: result: no configure:23917: checking types, headers, and functions configure:23920: checking for stdlib.h configure:23920: result: yes configure:23930: checking for sys/types.h configure:23930: result: yes configure:23942: checking locale.h usability configure:23942: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:23942: $? = 0 configure:23942: result: yes configure:23942: checking locale.h presence configure:23942: x86_64-pc-linux-gnu-gcc -E conftest.c configure:23942: $? = 0 configure:23942: result: yes configure:23942: checking for locale.h configure:23942: result: yes configure:23954: checking for stdbool.h that conforms to C99 configure:24039: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24039: $? = 0 configure:24046: result: yes configure:24048: checking for _Bool configure:24048: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24048: $? = 0 configure:24048: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 conftest.c: In function 'main': conftest.c:79: error: expected expression before ')' token configure:24048: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:24048: result: yes configure:24069: checking for strlcat configure:24069: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 /var/tmp/portage/sci-libs/netcdf-4.0.1/temp/ccjM58Hb.o: In function `main': conftest.c:(.text+0x7): undefined reference to `strlcat' collect2: ld returned 1 exit status configure:24069: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | /* Define strlcat to an innocuous variant, in case declares strlcat. | For example, HP-UX 11i declares gettimeofday. */ | #define strlcat innocuous_strlcat | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char strlcat (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef strlcat | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char strlcat (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_strlcat || defined __stub___strlcat | choke me | #endif | | int | main () | { | return strlcat (); | ; | return 0; | } configure:24069: result: no configure:24069: checking for strerror configure:24069: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24069: $? = 0 configure:24069: result: yes configure:24069: checking for snprintf configure:24069: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 conftest.c:69: warning: conflicting types for built-in function 'snprintf' configure:24069: $? = 0 configure:24069: result: yes configure:24081: checking for working alloca.h configure:24098: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24098: $? = 0 configure:24106: result: yes configure:24114: checking for alloca configure:24151: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24151: $? = 0 configure:24159: result: yes configure:24269: checking whether isnan is declared configure:24269: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24269: $? = 0 configure:24269: result: yes configure:24280: checking whether isinf is declared configure:24280: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24280: $? = 0 configure:24280: result: yes configure:24291: checking whether isfinite is declared configure:24291: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24291: $? = 0 configure:24291: result: yes configure:24302: checking whether signbit is declared configure:24302: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24302: $? = 0 configure:24302: result: yes configure:24320: checking for long long int configure:24360: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24360: $? = 0 configure:24390: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24390: $? = 0 configure:24390: ./conftest configure:24390: $? = 0 configure:24405: result: yes configure:24414: checking for unsigned long long int configure:24454: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24454: $? = 0 configure:24462: result: yes configure:24475: checking for struct stat.st_blksize configure:24475: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24475: $? = 0 configure:24475: result: yes configure:24489: checking for IEEE floating point format configure:24527: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24527: $? = 0 configure:24527: ./conftest configure:24527: $? = 0 configure:24536: result: yes configure:24544: checking for size_t configure:24544: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24544: $? = 0 configure:24544: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 conftest.c: In function 'main': conftest.c:93: error: expected expression before ')' token configure:24544: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:24544: result: yes configure:24555: checking for off_t configure:24555: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24555: $? = 0 configure:24555: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 conftest.c: In function 'main': conftest.c:93: error: expected expression before ')' token configure:24555: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:24555: result: yes configure:24566: checking for ssize_t configure:24566: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24566: $? = 0 configure:24566: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 conftest.c: In function 'main': conftest.c:93: error: expected expression before ')' token configure:24566: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ssize_t))) | return 0; | ; | return 0; | } configure:24566: result: yes configure:24575: checking for ptrdiff_t configure:24575: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24575: $? = 0 configure:24575: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 conftest.c: In function 'main': conftest.c:94: error: expected expression before ')' token configure:24575: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:24575: result: yes configure:24584: checking for uchar configure:24584: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 conftest.c: In function 'main': conftest.c:95: error: 'uchar' undeclared (first use in this function) conftest.c:95: error: (Each undeclared identifier is reported only once conftest.c:95: error: for each function it appears in.) configure:24584: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof (uchar)) | return 0; | ; | return 0; | } configure:24584: result: no configure:24597: checking whether char is unsigned configure:24615: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24615: $? = 0 configure:24622: result: no configure:24629: checking whether byte ordering is bigendian configure:24644: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 conftest.c:60: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'a' configure:24644: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #ifndef __APPLE_CC__ | not a universal capable compiler | #endif | typedef int dummy; | configure:24689: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 configure:24689: $? = 0 configure:24707: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe conftest.c >&5 conftest.c: In function 'main': conftest.c:66: error: 'not' undeclared (first use in this function) conftest.c:66: error: (Each undeclared identifier is reported only once conftest.c:66: error: for each function it appears in.) conftest.c:66: error: expected ';' before 'big' configure:24707: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:24835: result: no configure:24857: checking size of short configure:24862: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24862: $? = 0 configure:24862: ./conftest configure:24862: $? = 0 configure:24877: result: 2 configure:24891: checking size of int configure:24896: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24896: $? = 0 configure:24896: ./conftest configure:24896: $? = 0 configure:24911: result: 4 configure:24925: checking size of long configure:24930: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24930: $? = 0 configure:24930: ./conftest configure:24930: $? = 0 configure:24945: result: 8 configure:24959: checking size of float configure:24964: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24964: $? = 0 configure:24964: ./conftest configure:24964: $? = 0 configure:24979: result: 4 configure:24993: checking size of double configure:24998: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:24998: $? = 0 configure:24998: ./conftest configure:24998: $? = 0 configure:25013: result: 8 configure:25027: checking size of off_t configure:25032: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:25032: $? = 0 configure:25032: ./conftest configure:25032: $? = 0 configure:25047: result: 8 configure:25061: checking size of size_t configure:25066: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -Wl,-O1 conftest.c >&5 configure:25066: $? = 0 configure:25066: ./conftest configure:25066: $? = 0 configure:25081: result: 8 configure:25180: checking for manual-page index command configure:25182: result: configure:25193: checking what to call the output of the ftpbin target configure:25202: result: binary-netcdf-4.0.1_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-c++.tar x86_64-pc-linux-gnu-gfortran x86_64-pc-linux-gnu-c++ configure:25205: checking binary distribution directory configure:25213: result: /home/ftp/pub/binary/dummy_system configure:25245: checking hdf5.h usability configure:25245: x86_64-pc-linux-gnu-gcc -c -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -I/usr/include conftest.c >&5 In file included from /usr/include/hdf5.h:24, from conftest.c:99: /usr/include/H5public.h:57:20: error: mpi.h: No such file or directory /usr/include/H5public.h:59:21: error: mpio.h: No such file or directory In file included from /usr/include/hdf5.h:46, from conftest.c:99: /usr/include/H5FDmpi.h:66: error: expected specifier-qualifier-list before 'MPI_Comm' In file included from /usr/include/H5FDmpi.h:71, from /usr/include/hdf5.h:46, from conftest.c:99: /usr/include/H5FDmpio.h:50: error: expected declaration specifiers or '...' before 'MPI_Comm' /usr/include/H5FDmpio.h:50: error: expected declaration specifiers or '...' before 'MPI_Info' /usr/include/H5FDmpio.h:51: error: expected declaration specifiers or '...' before 'MPI_Comm' /usr/include/H5FDmpio.h:52: error: expected declaration specifiers or '...' before 'MPI_Info' In file included from /usr/include/H5FDmpi.h:72, from /usr/include/hdf5.h:46, from conftest.c:99: /usr/include/H5FDmpiposix.h:46: error: expected declaration specifiers or '...' before 'MPI_Comm' /usr/include/H5FDmpiposix.h:47: error: expected declaration specifiers or '...' before 'MPI_Comm' In file included from /usr/include/hdf5.h:46, from conftest.c:99: /usr/include/H5FDmpi.h:99: error: expected ')' before 'mpi_off' /usr/include/H5FDmpi.h:100: error: expected declaration specifiers or '...' before 'MPI_Offset' /usr/include/H5FDmpi.h:101: error: expected ')' before 'comm' /usr/include/H5FDmpi.h:103: error: expected ')' before '*' token /usr/include/H5FDmpi.h:108: error: expected declaration specifiers or '...' before 'MPI_Datatype' /usr/include/H5FDmpi.h:109: error: expected declaration specifiers or '...' before 'MPI_Datatype' /usr/include/H5FDmpi.h:115: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'H5FD_mpi_get_comm' configure:25245: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_SIZE_T 8 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:25245: result: no configure:25245: checking hdf5.h presence configure:25245: x86_64-pc-linux-gnu-gcc -E -I/usr/include conftest.c In file included from /usr/include/hdf5.h:24, from conftest.c:66: /usr/include/H5public.h:57:20: error: mpi.h: No such file or directory /usr/include/H5public.h:59:21: error: mpio.h: No such file or directory configure:25245: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0.1" | #define PACKAGE_STRING "netCDF 4.0.1" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf" | #define VERSION "4.0.1" | #define NCIO_MINBLOCKSIZE 256 | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define CHUNK_CACHE_SIZE 32000000 | #define CHUNK_CACHE_NELEMS 1000 | #define CHUNK_CACHE_PREEMPTION 0.75 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_LOCALE_H 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_SNPRINTF 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_SIGNBIT 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_SIZE_T 8 | /* end confdefs.h. */ | #include configure:25245: result: no configure:25245: checking for hdf5.h configure:25245: result: no configure:25259: checking for H5Fflush in -lhdf5 configure:25284: x86_64-pc-linux-gnu-gcc -o conftest -march=core2 -msse4 -mcx16 -msahf -O2 -pipe -I/usr/include -Wl,-O1 -L/usr/lib -L/usr/lib -L/usr/lib conftest.c -lhdf5 -lsz -lm -lz -lhdf5 >&5 configure:25284: $? = 0 configure:25293: result: yes configure:25310: error: Can't find the hdf5 header and/or library, or can't link a program to it. HDF5 must be built with zlib; the location of zlib must be specified for netCDF-4 with the --with-zlib option. If HDF5 was also built with szlib, then the location of szlib must also be specified with the --with-slib option. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_bigendian=no ac_cv_c_char_unsigned=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_ieeefloat=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-march=core2 -msse4 -mcx16 -msahf -O2 -pipe' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-march=core2 -msse4 -mcx16 -msahf -O2 -pipe' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value=-Wl,-O1 ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-pc-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=x86_64-pc-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_fc_compiler_gnu=yes ac_cv_fc_srcext_f90=none ac_cv_func_alloca_works=yes ac_cv_func_snprintf=yes ac_cv_func_strerror=yes ac_cv_func_strlcat=no ac_cv_have_decl_isfinite=yes ac_cv_have_decl_isinf=yes ac_cv_have_decl_isnan=yes ac_cv_have_decl_signbit=yes ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=no ac_cv_header_inttypes_h=yes ac_cv_header_locale_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_lib_hdf5_H5Fflush=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AR=x86_64-pc-linux-gnu-ar ac_cv_prog_AWK=gawk ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E' ac_cv_prog_CXX=x86_64-pc-linux-gnu-c++ ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-c++ -E' ac_cv_prog_F77=x86_64-pc-linux-gnu-gfortran ac_cv_prog_FC=x86_64-pc-linux-gnu-gfortran ac_cv_prog_NM='/usr/bin/nm -B' ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cc_x86_64_pc_linux_gnu_gcc_c_o=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_f90_uppercase_mod=no ac_cv_prog_fc_g=yes ac_cv_prog_make_make_set=yes ac_cv_sizeof_double=8 ac_cv_sizeof_float=4 ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_off_t=8 ac_cv_sizeof_short=2 ac_cv_sizeof_size_t=8 ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ac_cv_type__Bool=yes ac_cv_type_long_long_int=yes ac_cv_type_off_t=yes ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes ac_cv_type_ssize_t=yes ac_cv_type_uchar=no ac_cv_type_unsigned_long_long_int=yes ac_cv_working_alloca_h=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 ax_cv_f90_modflag=-I lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_compiler_static_works_FC=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1572864 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run aclocal-1.10' ALLOCA='' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run tar' AR='x86_64-pc-linux-gnu-ar' AUTOCONF='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run autoconf' AUTOHEADER='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run autoheader' AUTOMAKE='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run automake-1.10' AWK='gawk' BINFILE_NAME='binary-netcdf-4.0.1_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-c++.tar' BUILD_BENCHMARKS_FALSE='' BUILD_BENCHMARKS_TRUE='#' BUILD_CXX4_FALSE='' BUILD_CXX4_TRUE='#' BUILD_CXX_FALSE='#' BUILD_CXX_TRUE='' BUILD_C_FALSE='#' BUILD_C_TRUE='' BUILD_DAP4_FALSE='' BUILD_DAP4_TRUE='' BUILD_DAP_FALSE='' BUILD_DAP_TRUE='#' BUILD_DLL_FALSE='' BUILD_DLL_TRUE='#' BUILD_EXAMPLES_FALSE='' BUILD_EXAMPLES_TRUE='' BUILD_F77_FALSE='#' BUILD_F77_TRUE='' BUILD_F90_FALSE='#' BUILD_F90_TRUE='' BUILD_NCGEN4_FALSE='' BUILD_NCGEN4_TRUE='' BUILD_PARALLEL_FALSE='' BUILD_PARALLEL_TRUE='' BUILD_SEPARATE_FORTRAN_FALSE='#' BUILD_SEPARATE_FORTRAN_TRUE='' BUILD_SHARED_FALSE='#' BUILD_SHARED_TRUE='' BUILD_UTILITIES_FALSE='#' BUILD_UTILITIES_TRUE='' BUILD_V2_FALSE='#' BUILD_V2_TRUE='' CC='x86_64-pc-linux-gnu-gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-march=core2 -msse4 -mcx16 -msahf -O2 -pipe' CPP='x86_64-pc-linux-gnu-gcc -E' CPPFLAGS=' -I/usr/include' CROSS_COMPILING_FALSE='' CROSS_COMPILING_TRUE='#' CURLDIR='' CURL_CFLAGS='' CURL_LIBS='' CXX='x86_64-pc-linux-gnu-c++' CXXCPP='x86_64-pc-linux-gnu-c++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-march=core2 -msse4 -mcx16 -msahf -O2 -pipe' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_DAP_REMOTE_TESTS_FALSE='' ENABLE_DAP_REMOTE_TESTS_TRUE='#' EXEEXT='' EXTRA_EXAMPLE_TESTS_FALSE='' EXTRA_EXAMPLE_TESTS_TRUE='#' EXTRA_TESTS_FALSE='' EXTRA_TESTS_TRUE='#' F77='x86_64-pc-linux-gnu-gfortran' FC='x86_64-pc-linux-gnu-gfortran' FCFLAGS='-g -O2' FCFLAGS_f90='' FFLAGS='-g -O2' FGREP='/bin/grep -F' FTPBINDIR='/home/ftp/pub/binary/dummy_system' GREP='/bin/grep' HAS_CXX='' HAS_DAP='' HAS_F77='' HAS_F90='' HAS_NC2='' HAS_NC4='' HDF5DIR='/usr' INSTALL_DATA='${INSTALL} -m 644' INSTALL_DOCS_FALSE='#' INSTALL_DOCS_TRUE='' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' INTERNAL_OCLIB_FALSE='' INTERNAL_OCLIB_TRUE='' LARGE_FILE_TESTS_FALSE='' LARGE_FILE_TESTS_TRUE='#' LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' LDFLAGS='-Wl,-O1 -L/usr/lib -L/usr/lib -L/usr/lib' LIBOBJS='' LIBS='-lhdf5 -lsz -lm -lz -lhdf5' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/missing --run makeinfo' MAKEWHATIS_CMD='' MKDIR_P='/bin/mkdir -p' MOD_FLAG='-I' NC_FLIBS='' NC_LIBS='' NETCDF_C_LIB='' NM='/usr/bin/nm -B' NMEDIT='' NMFLAGS='' OBJDUMP='x86_64-pc-linux-gnu-objdump' OBJEXT='o' OCLIB_CFLAGS='' OCLIB_LIBS='' OTOOL64='' OTOOL='' PACKAGE='netcdf' PACKAGE_BUGREPORT='support@unidata.ucar.edu' PACKAGE_NAME='netCDF' PACKAGE_STRING='netCDF 4.0.1' PACKAGE_TARNAME='netcdf' PACKAGE_URL='' PACKAGE_VERSION='4.0.1' PATH_SEPARATOR=':' RANLIB='x86_64-pc-linux-gnu-ranlib' SED='/bin/sed' SET_MAKE='' SHAREEXT='so' SHELL='/bin/sh' STRIP='x86_64-pc-linux-gnu-strip' SZLIBDIR='/usr' TEST_F77_FALSE='#' TEST_F77_TRUE='' TEST_PARALLEL_FALSE='' TEST_PARALLEL_TRUE='' UPPER_CASE_MOD_FALSE='' UPPER_CASE_MOD_TRUE='#' USE_FFIO_FALSE='' USE_FFIO_TRUE='#' USE_HDF5_DIR_FALSE='#' USE_HDF5_DIR_TRUE='' USE_LOGGING_FALSE='' USE_LOGGING_TRUE='#' USE_NETCDF4_FALSE='#' USE_NETCDF4_TRUE='' USE_NETCDF_C_LIB_DIR_FALSE='' USE_NETCDF_C_LIB_DIR_TRUE='#' USE_RENAMEV3_FALSE='#' USE_RENAMEV3_TRUE='' USE_SZLIB_DIR_FALSE='#' USE_SZLIB_DIR_TRUE='' USE_VALGRIND_TESTS_FALSE='' USE_VALGRIND_TESTS_TRUE='#' USE_ZLIB_DIR_FALSE='#' USE_ZLIB_DIR_TRUE='' VERSION='4.0.1' WHATIS='whatis' ZLIBDIR='/usr' ac_ct_CC='' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-pc-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='/usr/share' datarootdir='${prefix}/share' docdir='/usr/share/doc/netcdf-4.0.1' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='x86_64-pc-linux-gnu' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='/usr/share/info' install_sh='$(SHELL) /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/install-sh' libdir='/usr/lib64' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var/lib' lt_ECHO='echo' mandir='/usr/share/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' prog='' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "netCDF" #define PACKAGE_TARNAME "netcdf" #define PACKAGE_VERSION "4.0.1" #define PACKAGE_STRING "netCDF 4.0.1" #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" #define PACKAGE_URL "" #define PACKAGE "netcdf" #define VERSION "4.0.1" #define NCIO_MINBLOCKSIZE 256 #define USE_NETCDF4 1 #define H5_USE_16_API 1 #define CHUNK_CACHE_SIZE 32000000 #define CHUNK_CACHE_NELEMS 1000 #define CHUNK_CACHE_PREEMPTION 0.75 #define USE_RENAMEV3 1 #define USE_EXTREME_NUMBERS 1 #define TEMP_LARGE "." #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define pgiFortran 1 #define NF_INT1_T byte #define NF_INT2_T integer*2 #define NF_INT1_IS_C_SIGNED_CHAR 1 #define NF_INT2_IS_C_SHORT 1 #define NF_INT_IS_C_INT 1 #define NF_REAL_IS_C_FLOAT 1 #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 #define NCBYTE_T byte #define NCSHORT_T integer*2 #define HAVE_LOCALE_H 1 #define HAVE__BOOL 1 #define HAVE_STDBOOL_H 1 #define HAVE_STRERROR 1 #define HAVE_SNPRINTF 1 #define HAVE_ALLOCA_H 1 #define HAVE_ALLOCA 1 #define HAVE_DECL_ISNAN 1 #define HAVE_DECL_ISINF 1 #define HAVE_DECL_ISFINITE 1 #define HAVE_DECL_SIGNBIT 1 #define HAVE_LONG_LONG_INT 1 #define HAVE_UNSIGNED_LONG_LONG_INT 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_ST_BLKSIZE 1 #define HAVE_SSIZE_T 1 #define HAVE_PTRDIFF_T 1 #define SIZEOF_SHORT 2 #define SIZEOF_INT 4 #define SIZEOF_LONG 8 #define SIZEOF_FLOAT 4 #define SIZEOF_DOUBLE 8 #define SIZEOF_OFF_T 8 #define SIZEOF_SIZE_T 8 #define HAVE_LIBHDF5 1 configure: exit 1