Build log

h5py-1.2.1:20091222-021151.log (text/plain), 52.31 KB, created by Diego Elio Pettenò (RETIRED) on 2009-12-22 21:55:12 UTC

 * CPV:  dev-python/h5py-1.2.1
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking h5py-1.2.1.tar.gz to /var/tmp/portage/dev-python/h5py-1.2.1/work
>>> Source unpacked in /var/tmp/portage/dev-python/h5py-1.2.1/work
>>> Compiling source in /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1 ...
python2.6 setup.py build
running build
running build_py
creating build
creating build/lib.linux-i686-2.6
creating build/lib.linux-i686-2.6/h5py
copying h5py/_ipy_completer.py -> build/lib.linux-i686-2.6/h5py
copying h5py/_stub.py -> build/lib.linux-i686-2.6/h5py
copying h5py/highlevel.py -> build/lib.linux-i686-2.6/h5py
copying h5py/selections.py -> build/lib.linux-i686-2.6/h5py
copying h5py/filters.py -> build/lib.linux-i686-2.6/h5py
copying h5py/__init__.py -> build/lib.linux-i686-2.6/h5py
copying h5py/_sync.py -> build/lib.linux-i686-2.6/h5py
copying h5py/version.py -> build/lib.linux-i686-2.6/h5py
creating build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_threads.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_highlevel.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5a.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5i.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_slicing.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5s.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/testfiles.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_dataset.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5r.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_group.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5d.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5p.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_utils.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/common.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5t.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/__init__.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_vlen.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_filters.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5f.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/tests/test_h5g.py -> build/lib.linux-i686-2.6/h5py/tests
copying h5py/h5i.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5r.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5fd.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5e.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5l.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5p.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5a.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5z.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5t.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5o.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5s.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5l_body.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/utils.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5d.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5g.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5f.pyx -> build/lib.linux-i686-2.6/h5py
copying h5py/h5o_body.pyx -> build/lib.linux-i686-2.6/h5py
creating build/lib.linux-i686-2.6/h5py/tests/data
copying h5py/tests/data/attributes.hdf5 -> build/lib.linux-i686-2.6/h5py/tests/data
copying h5py/tests/data/smpl_compound_chunked.hdf5 -> build/lib.linux-i686-2.6/h5py/tests/data
copying h5py/tests/data/strings.h5 -> build/lib.linux-i686-2.6/h5py/tests/data
copying h5py/tests/data/vlstra.h5 -> build/lib.linux-i686-2.6/h5py/tests/data
running build_ext
Building for HDF5 1.8 (path not specified)
building 'h5py.h5' extension
creating build/temp.linux-i686-2.6
creating build/temp.linux-i686-2.6/h5py
creating build/temp.linux-i686-2.6/var
creating build/temp.linux-i686-2.6/var/tmp
creating build/temp.linux-i686-2.6/var/tmp/portage
creating build/temp.linux-i686-2.6/var/tmp/portage/dev-python
creating build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1
creating build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work
creating build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1
creating build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf
creating build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf
creating build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5.c -o build/temp.linux-i686-2.6/h5py/h5.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf_filter.c -o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf_filter.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf/lzf_c.c -o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf/lzf_c.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf/lzf_d.c -o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf/lzf_d.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeproxy.c -o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeproxy.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeconv.c -o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeconv.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
In file included from /usr/include/python2.6/Python.h:8,
                 from /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeconv.c:15:
/usr/include/python2.6/pyconfig.h:1064:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdio.h:28,
                 from /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeconv.c:13:
/usr/include/features.h:210:1: warning: this is the location of the previous definition
In file included from /usr/include/string.h:640,
                 from /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeconv.c:14:
In function ‘memset’,
    inlined from ‘vlen_fixed’ at /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeconv.c:333:
/usr/include/bits/string3.h:83: warning: call to ‘__warn_memset_zero_len’ declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf_filter.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf/lzf_c.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf/lzf_d.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeproxy.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeconv.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5.so
building 'h5py.h5e' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5e.c -o build/temp.linux-i686-2.6/h5py/h5e.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5e.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5e.so
building 'h5py.h5f' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5f.c -o build/temp.linux-i686-2.6/h5py/h5f.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5f.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5f.so
building 'h5py.h5g' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5g.c -o build/temp.linux-i686-2.6/h5py/h5g.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
h5py/h5g.c: In function ‘__pyx_pf_4h5py_3h5g_iterate’:
h5py/h5g.c:2049: warning: passing argument 4 of ‘H5Giterate’ from incompatible pointer type
/usr/include/H5Gpublic.h:163: note: expected ‘H5G_iterate_t’ but argument is of type ‘herr_t (*)(hid_t,  char *, void *)’
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5g.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5g.so
building 'h5py.h5s' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5s.c -o build/temp.linux-i686-2.6/h5py/h5s.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
h5py/h5s.c: In function ‘__pyx_pf_4h5py_3h5s_7SpaceID_select_elements’:
h5py/h5s.c:3120: warning: passing argument 4 of ‘H5Sselect_elements’ from incompatible pointer type
/usr/include/H5Spublic.h:128: note: expected ‘const hsize_t *’ but argument is of type ‘hsize_t **’
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5s.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5s.so
building 'h5py.h5t' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5t.c -o build/temp.linux-i686-2.6/h5py/h5t.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5t.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5t.so
building 'h5py.h5d' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5d.c -o build/temp.linux-i686-2.6/h5py/h5d.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5d.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5d.so
building 'h5py.h5a' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5a.c -o build/temp.linux-i686-2.6/h5py/h5a.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
h5py/h5a.c: In function ‘__pyx_pf_4h5py_3h5a_iterate’:
h5py/h5a.c:3071: warning: assignment from incompatible pointer type
h5py/h5a.c:3083: warning: assignment from incompatible pointer type
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5a.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5a.so
building 'h5py.h5p' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5p.c -o build/temp.linux-i686-2.6/h5py/h5p.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5p.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5p.so
building 'h5py.h5z' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5z.c -o build/temp.linux-i686-2.6/h5py/h5z.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5z.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5z.so
building 'h5py.h5i' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5i.c -o build/temp.linux-i686-2.6/h5py/h5i.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5i.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5i.so
building 'h5py.h5r' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5r.c -o build/temp.linux-i686-2.6/h5py/h5r.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5r.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5r.so
building 'h5py.h5fd' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5fd.c -o build/temp.linux-i686-2.6/h5py/h5fd.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5fd.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5fd.so
building 'h5py.utils' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/utils.c -o build/temp.linux-i686-2.6/h5py/utils.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/utils.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/utils.so
building 'h5py.h5o' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5o.c -o build/temp.linux-i686-2.6/h5py/h5o.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
h5py/h5o.c: In function ‘__pyx_pf_4h5py_3h5o_visit’:
h5py/h5o.c:3383: warning: assignment from incompatible pointer type
h5py/h5o.c:3395: warning: assignment from incompatible pointer type
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5o.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5o.so
building 'h5py.h5l' extension
i686-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -pipe -fPIC -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include -I/usr/local/include -I/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf -I/usr/include/python2.6 -c h5py/h5l.c -o build/temp.linux-i686-2.6/h5py/h5l.o -DH5_USE_16_API -Wno-unused -Wno-uninitialized
h5py/h5l.c: In function ‘__pyx_pf_4h5py_3h5l_9LinkProxy_get_val’:
h5py/h5l.c:2061: warning: passing argument 4 of ‘H5Lunpack_elink_val’ from incompatible pointer type
/usr/include/H5Lpublic.h:193: note: expected ‘const char **’ but argument is of type ‘char **’
h5py/h5l.c:2061: warning: passing argument 5 of ‘H5Lunpack_elink_val’ from incompatible pointer type
/usr/include/H5Lpublic.h:193: note: expected ‘const char **’ but argument is of type ‘char **’
h5py/h5l.c: In function ‘__pyx_pf_4h5py_3h5l_9LinkProxy_visit’:
h5py/h5l.c:2478: warning: assignment from incompatible pointer type
h5py/h5l.c:2490: warning: assignment from incompatible pointer type
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5l.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o build/lib.linux-i686-2.6/h5py/h5l.so
>>> Source compiled.
running test
running egg_info
writing h5py.egg-info/PKG-INFO
writing top-level names to h5py.egg-info/top_level.txt
writing dependency_links to h5py.egg-info/dependency_links.txt
reading manifest file 'h5py.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'h5py.egg-info/SOURCES.txt'
running build_ext
Building for HDF5 1.8 (path not specified)
building 'h5py.h5' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf_filter.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf/lzf_c.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/lzf/lzf/lzf_d.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeproxy.o build/temp.linux-i686-2.6/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/typeconv.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5.so
building 'h5py.h5e' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5e.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5e.so
building 'h5py.h5f' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5f.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5f.so
building 'h5py.h5g' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5g.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5g.so
building 'h5py.h5s' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5s.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5s.so
building 'h5py.h5t' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5t.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5t.so
building 'h5py.h5d' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5d.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5d.so
building 'h5py.h5a' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5a.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5a.so
building 'h5py.h5p' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5p.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5p.so
building 'h5py.h5z' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5z.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5z.so
building 'h5py.h5i' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5i.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5i.so
building 'h5py.h5r' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5r.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5r.so
building 'h5py.h5fd' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5fd.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5fd.so
building 'h5py.utils' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/utils.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/utils.so
building 'h5py.h5o' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5o.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5o.so
building 'h5py.h5l' extension
i686-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -O2 -pipe build/temp.linux-i686-2.6/h5py/h5l.o -L/usr/lib/ -L/usr/local/lib -L/usr/lib -Wl,-R/usr/lib/ -Wl,-R/usr/local/lib -lhdf5 -lpython2.6 -o /var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/h5l.so
Test exceptions ... ok
Test new and old len(), iteration over rows ... ok
Test order coercion ... ok
Test extending datasets ... ok
test_slice_big (h5py.tests.test_highlevel.TestDataset) ... ok
Check object identity, hashing and string representation ... ok
test_attributes (h5py.tests.test_highlevel.TestExceptions) ... ok
test_files (h5py.tests.test_highlevel.TestExceptions) ... ok
test_groups (h5py.tests.test_highlevel.TestExceptions) ... ok
test_mode (h5py.tests.test_highlevel.TestExceptions) ... ok
test_AttributeManager (h5py.tests.test_highlevel.TestFile) ... ok
test_File_close (h5py.tests.test_highlevel.TestFile) ... ok
test_File_flush (h5py.tests.test_highlevel.TestFile) ... ok
test_File_special (h5py.tests.test_highlevel.TestFile) ... ok
test_attr_dictcompat (h5py.tests.test_highlevel.TestFile) ... ok
test_drivers (h5py.tests.test_highlevel.TestFile) ... ok
test_unicode (h5py.tests.test_highlevel.TestFile) ... ok
test_enum (h5py.tests.test_highlevel.TestTypes) ... ok
test_close (h5py.tests.test_h5a.TestH5A) ... ok
test_create_18 (h5py.tests.test_h5a.TestH5A) ... ok
test_create_write (h5py.tests.test_h5a.TestH5A) ... ok
test_delete (h5py.tests.test_h5a.TestH5A) ... ok
test_exists (h5py.tests.test_h5a.TestH5A) ... ok
test_exists_18 (h5py.tests.test_h5a.TestH5A) ... ok
test_get_info_18 (h5py.tests.test_h5a.TestH5A) ... ok
test_get_name (h5py.tests.test_h5a.TestH5A) ... ok
test_get_num_attrs (h5py.tests.test_h5a.TestH5A) ... ok
test_get_space (h5py.tests.test_h5a.TestH5A) ... ok
test_get_type (h5py.tests.test_h5a.TestH5A) ... ok
test_iterate (h5py.tests.test_h5a.TestH5A) ... ok
test_open_idx (h5py.tests.test_h5a.TestH5A) ... ok
test_open_name (h5py.tests.test_h5a.TestH5A) ... ok
test_open_name_18 (h5py.tests.test_h5a.TestH5A) ... ok
test_prop_dtype (h5py.tests.test_h5a.TestH5A) ... ok
test_prop_name (h5py.tests.test_h5a.TestH5A) ... ok
test_prop_shape (h5py.tests.test_h5a.TestH5A) ... ok
test_read (h5py.tests.test_h5a.TestH5A) ... ok
test_rename_18 (h5py.tests.test_h5a.TestH5A) ... ok
test_get_file_id (h5py.tests.test_h5i.TestH5I) ... ok
test_get_name (h5py.tests.test_h5i.TestH5I) ... ok
test_get_type (h5py.tests.test_h5i.TestH5I) ... ok
test_refs (h5py.tests.test_h5i.TestH5I) ... ok
test_broadcast (h5py.tests.test_slicing.TestSlicing) ... ok
test_compound_literal (h5py.tests.test_slicing.TestSlicing) ... ok
test_fancy_index (h5py.tests.test_slicing.TestSlicing) ... ok
test_scalar_broadcast (h5py.tests.test_slicing.TestSlicing) ... ok
test_scalars (h5py.tests.test_slicing.TestSlicing) ... ok
test_slice_names (h5py.tests.test_slicing.TestSlicing) ... ok
test_slices (h5py.tests.test_slicing.TestSlicing) ... ok
test_slices_big (h5py.tests.test_slicing.TestSlicing) ... ok
test_copy (h5py.tests.test_h5s.TestH5S) ... ok
test_create_close (h5py.tests.test_h5s.TestH5S) ... ok
test_elements (h5py.tests.test_h5s.TestH5S) ... ok
test_extent_copy (h5py.tests.test_h5s.TestH5S) ... ok
test_get_blocks (h5py.tests.test_h5s.TestH5S) ... ok
test_get_select_bounds (h5py.tests.test_h5s.TestH5S) ... ok
test_get_select_type_npoints (h5py.tests.test_h5s.TestH5S) ... ok
test_get_simple_extent_npoints (h5py.tests.test_h5s.TestH5S) ... ok
test_get_simple_extent_type (h5py.tests.test_h5s.TestH5S) ... ok
test_is_simple (h5py.tests.test_h5s.TestH5S) ... ok
test_offset_simple (h5py.tests.test_h5s.TestH5S) ... ok
test_py (h5py.tests.test_h5s.TestH5S) ... ok
test_select (h5py.tests.test_h5s.TestH5S) ... ok
test_set_extent_none (h5py.tests.test_h5s.TestH5S) ... ok
test_set_extent_simple (h5py.tests.test_h5s.TestH5S) ... ok
test_simple (h5py.tests.test_h5s.TestH5S) ... ok
test_create (h5py.tests.test_dataset.TestDataset) ... ok
test_literal (h5py.tests.test_dataset.TestDataset) ... ok
test_objref (h5py.tests.test_h5r.TestH5R) ... ok
test_regref (h5py.tests.test_h5r.TestH5R) ... ok
test_Group_create_dataset (h5py.tests.test_group.TestInit) ... ok
test_Group_create_group (h5py.tests.test_group.TestInit) ... ok
Group constructor ... ok
test_copy_18 (h5py.tests.test_group.TestOther) ... ok
test_require (h5py.tests.test_group.TestOther) ... ok
test_visit_18 (h5py.tests.test_group.TestOther) ... ok
Auto-creation of dataset from sequence ... ok
Assignment of a dtype to a Group object ... ok
Exceptions from __setitem__ ... ok
Hard-linking by direct assignment to Group ... ok
Assignment of an ndarray to a Group object ... ok
test_contains (h5py.tests.test_group.TestSpecial) ... ok
test_del (h5py.tests.test_group.TestSpecial) ... ok
test_dictcompat (h5py.tests.test_group.TestSpecial) ... ok
test_iter (h5py.tests.test_group.TestSpecial) ... ok
test_len (h5py.tests.test_group.TestSpecial) ... ok
test_str_repr (h5py.tests.test_group.TestSpecial) ... ok
test_create_offset (h5py.tests.test_h5d.TestH5D) ... ERROR
test_extend (h5py.tests.test_h5d.TestH5D) ... ERROR
test_get_create_plist (h5py.tests.test_h5d.TestH5D) ... ERROR
test_get_space (h5py.tests.test_h5d.TestH5D) ... ERROR
test_get_space_status (h5py.tests.test_h5d.TestH5D) ... ERROR
test_get_storage_size (h5py.tests.test_h5d.TestH5D) ... ERROR
test_get_type (h5py.tests.test_h5d.TestH5D) ... ERROR
test_open_close (h5py.tests.test_h5d.TestH5D) ... ERROR
test_py (h5py.tests.test_h5d.TestH5D) ... ERROR
test_read (h5py.tests.test_h5d.TestH5D) ... ERROR
test_write (h5py.tests.test_h5d.TestH5D) ... ERROR
test_chunk (h5py.tests.test_h5p.TestDCID) ... ok
test_fill_value (h5py.tests.test_h5p.TestDCID) ... ok
test_layout (h5py.tests.test_h5p.TestDCID) ... ok
test_fapl_core (h5py.tests.test_h5p.TestFAID) ... ok
test_fclose_degree (h5py.tests.test_h5p.TestFAID) ... ok
test_sieve (h5py.tests.test_h5p.TestFAID) ... ok
test_sizes (h5py.tests.test_h5p.TestFCID) ... ok
test_userblock (h5py.tests.test_h5p.TestFCID) ... ok
test_version (h5py.tests.test_h5p.TestFCID) ... ok
test_create_get_class (h5py.tests.test_h5p.TestH5P) ... ok
Check if it's possible to read from the NumPy array ... ok
Check if it's possible to write to the NumPy array ... ok
Test all array-specific features ... ok
test_bool (h5py.tests.test_h5t.TestH5T) ... ok
Make sure that closing an object decrefs its identifier ... ok
Test all compound datatype operations ... ok
test_copy (h5py.tests.test_h5t.TestH5T) ... ok
Check that it produces instances from typecodes ... ok
test_detect_class (h5py.tests.test_h5t.TestH5T) ... ok
Test all enum-specific routines ... ok
test_equal (h5py.tests.test_h5t.TestH5T) ... ok
test_get_class (h5py.tests.test_h5t.TestH5T) ... ok
test_get_set_size (h5py.tests.test_h5t.TestH5T) ... ok
test_get_super (h5py.tests.test_h5t.TestH5T) ... ok
test_lock (h5py.tests.test_h5t.TestH5T) ... ok
test_names (h5py.tests.test_h5t.TestH5T) ... ok
Check that we can commit a named type and open it again ... ok
test_py_create_array (h5py.tests.test_h5t.TestH5T) ... ok
test_py_create_compound (h5py.tests.test_h5t.TestH5T) ... ok
test_py_create_simple (h5py.tests.test_h5t.TestH5T) ... ok
test_set_get_order_sign (h5py.tests.test_h5t.TestH5T) ... ok
test_setget_tag (h5py.tests.test_h5t.TestH5T) ... ok
test_array (h5py.tests.test_vlen.TestVlen) ... ok
test_compound (h5py.tests.test_vlen.TestVlen) ... ok
test_create (h5py.tests.test_vlen.TestVlen) ... ok
test_read_attr (h5py.tests.test_vlen.TestVlen) ... ok
test_read_strings (h5py.tests.test_vlen.TestVlen) ... ok
test_write_attr (h5py.tests.test_vlen.TestVlen) ... ok
test_write_strings (h5py.tests.test_vlen.TestVlen) ... ok
test_chunks (h5py.tests.test_filters.TestFilters) ... ok
test_compression (h5py.tests.test_filters.TestFilters) ... ok
test_compression_opts (h5py.tests.test_filters.TestFilters) ... ok
test_data (h5py.tests.test_filters.TestFilters) ... ok
test_fletcher32_shuffle (h5py.tests.test_filters.TestFilters) ... ok
test_create (h5py.tests.test_h5f.TestH5F) ... ok
test_flush (h5py.tests.test_h5f.TestH5F) ... ok
test_get_access_plist (h5py.tests.test_h5f.TestH5F) ... ok
test_get_create_plist (h5py.tests.test_h5f.TestH5F) ... ok
test_get_filesize (h5py.tests.test_h5f.TestH5F) ... ok
test_get_freespace (h5py.tests.test_h5f.TestH5F) ... ok
test_get_name (h5py.tests.test_h5f.TestH5F) ... ok
test_get_obj_count (h5py.tests.test_h5f.TestH5F) ... ok
test_get_obj_ids (h5py.tests.test_h5f.TestH5F) ... ok
test_is_hdf5 (h5py.tests.test_h5f.TestH5F) ... ok
test_open_close (h5py.tests.test_h5f.TestH5F) ... ok
test_py (h5py.tests.test_h5f.TestH5F) ... ok
test_create (h5py.tests.test_h5g.TestH5G) ... ok
test_get_num_objs (h5py.tests.test_h5g.TestH5G) ... ok
test_get_objinfo (h5py.tests.test_h5g.TestH5G) ... ok
test_get_set_comment (h5py.tests.test_h5g.TestH5G) ... ok
test_iterate (h5py.tests.test_h5g.TestH5G) ... ok
test_link_A (h5py.tests.test_h5g.TestH5G) ... ok
test_link_B (h5py.tests.test_h5g.TestH5G) ... ok
test_objname_objtype (h5py.tests.test_h5g.TestH5G) ... ok
test_open_close (h5py.tests.test_h5g.TestH5G) ... ok
test_py_contains (h5py.tests.test_h5g.TestH5G) ... ok
test_py_iter (h5py.tests.test_h5g.TestH5G) ... ok

======================================================================
ERROR: test_create_offset (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_extend (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_get_create_plist (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_get_space (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_get_space_status (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_get_storage_size (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_get_type (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_open_close (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_py (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_read (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

======================================================================
ERROR: test_write (h5py.tests.test_h5d.TestH5D)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/tests/test_h5d.py", line 41, in setUp
    self.dset = h5d.open(self.fid, "CompoundChunked")
  File "/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1/h5py/_sync.py", line 88, in wrap
    return func(*args, **kwds)
  File "h5d.pyx", line 78, in h5py.h5d.open (h5py/h5d.c:1391)
DatatypeError: Incorrect array datatype version (Datatype: Wrong version number)

----------------------------------------------------------------------
Ran 165 tests in 2.508s

FAILED (errors=11)
 * ERROR: dev-python/h5py-1.2.1 failed:
 *   test failed
 * 
 * Call stack:
 *     ebuild.sh, line  61:  Called src_test
 *   environment, line 3354:  Called die
 * The specific snippet of code:
 *       "${python}" setup.py test || die "test failed"
 * 
 * If you need support, post the output of 'emerge --info =dev-python/h5py-1.2.1',
 * the complete build log and the output of 'emerge -pqv =dev-python/h5py-1.2.1'.
 * The complete build log is located at '/var/log/portage/build/dev-python/h5py-1.2.1:20091222-021151.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-python/h5py-1.2.1/temp/environment'.
 * S: '/var/tmp/portage/dev-python/h5py-1.2.1/work/h5py-1.2.1'

>>> Install h5py-1.2.1 into /var/tmp/portage/dev-python/h5py-1.2.1/image/ category dev-python
python2.6 setup.py install --root=/var/tmp/portage/dev-python/h5py-1.2.1/image/ --no-compile
running install
running build
running build_py
running build_ext
Building for HDF5 1.8 (path not specified)
running install_lib
creating /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5i.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/_ipy_completer.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5g.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/_stub.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/utils.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5f.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/highlevel.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5r.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5fd.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5t.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5e.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5l.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5e.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5d.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5p.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5a.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5z.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
creating /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_threads.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_highlevel.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5a.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5i.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_slicing.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5s.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/testfiles.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_dataset.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5r.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_group.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5d.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5p.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_utils.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/common.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
creating /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests/data
copying build/lib.linux-i686-2.6/h5py/tests/data/strings.h5 -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests/data
copying build/lib.linux-i686-2.6/h5py/tests/data/attributes.hdf5 -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests/data
copying build/lib.linux-i686-2.6/h5py/tests/data/smpl_compound_chunked.hdf5 -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests/data
copying build/lib.linux-i686-2.6/h5py/tests/data/vlstra.h5 -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests/data
copying build/lib.linux-i686-2.6/h5py/tests/test_h5t.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/__init__.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_vlen.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_filters.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5f.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/tests/test_h5g.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py/tests
copying build/lib.linux-i686-2.6/h5py/h5a.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/selections.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5s.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/filters.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5fd.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5t.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5r.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5o.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5s.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5o.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5l_body.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/utils.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5d.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5p.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5i.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5g.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5l.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/__init__.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/_sync.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/version.py -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5z.so -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5f.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
copying build/lib.linux-i686-2.6/h5py/h5o_body.pyx -> /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py
running install_egg_info
running egg_info
writing h5py.egg-info/PKG-INFO
writing top-level names to h5py.egg-info/top_level.txt
writing dependency_links to h5py.egg-info/dependency_links.txt
reading manifest file 'h5py.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'h5py.egg-info/SOURCES.txt'
Copying h5py.egg-info to /var/tmp/portage/dev-python/h5py-1.2.1/image/usr/lib/python2.6/site-packages/h5py-1.2.1-py2.6.egg-info
running install_scripts
>>> Completed installing h5py-1.2.1 into /var/tmp/portage/dev-python/h5py-1.2.1/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/lib/python2.6/site-packages/h5py/h5.so
   usr/lib/python2.6/site-packages/h5py/h5g.so
   usr/lib/python2.6/site-packages/h5py/utils.so
   usr/lib/python2.6/site-packages/h5py/h5f.so
   usr/lib/python2.6/site-packages/h5py/h5t.so
   usr/lib/python2.6/site-packages/h5py/h5e.so
   usr/lib/python2.6/site-packages/h5py/h5d.so
   usr/lib/python2.6/site-packages/h5py/h5a.so
   usr/lib/python2.6/site-packages/h5py/h5s.so
   usr/lib/python2.6/site-packages/h5py/h5fd.so
   usr/lib/python2.6/site-packages/h5py/h5r.so
   usr/lib/python2.6/site-packages/h5py/h5o.so
   usr/lib/python2.6/site-packages/h5py/h5p.so
   usr/lib/python2.6/site-packages/h5py/h5i.so
   usr/lib/python2.6/site-packages/h5py/h5l.so
   usr/lib/python2.6/site-packages/h5py/h5z.so
 * Removing /usr/share/doc
 * Removing /usr/share/info
 * Compilation and optimization of Python modules for Python 2.6 ...
  [ ok ]
Merge of dev-python/h5py-1.2.1 at 2009-12-22T02:11:51+00:00
failed