# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild,v 1.5 2006/12/10 19:23:34 ribosome Exp $

inherit perl-module eutils

DESCRIPTION="Perl tools for bioinformatics - Core modules"
HOMEPAGE="http://www.bioperl.org/"
SRC_URI="http://www.bioperl.org/DIST/bioperl-1.5.2_102.tar.bz2"

LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~sparc ~x86"
IUSE="mysql gd"

# TODO: upgrade somehow CPAN module of dev-lang/perl-5.8.8-r5 from 1.76_02 to >= 1.81
# perl -MCPAN -e "install Bundle::CPAN"
DEPEND="
	virtual/perl-File-Temp
	dev-perl/HTML-Parser
	dev-perl/IO-String
	dev-perl/IO-stringy
	dev-perl/SOAP-Lite
	virtual/perl-Storable
	dev-perl/XML-DOM
	dev-perl/XML-Parser
	dev-perl/XML-Writer
	dev-perl/XML-Twig
	dev-perl/libxml-perl
	dev-perl/libwww-perl
	dev-perl/Graph
	dev-perl/Text-Shellwords
	~sci-libs/io_lib-1.8.12b
	!=sci-libs/io_lib-1.9*
	gd? (
			>=dev-perl/GD-1.32-r1
			dev-perl/SVG
			dev-perl/GD-SVG
		)
	mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )
	dev-libs/expat"

src_unpack() {
	unpack ${A}
	mv bioperl-1.5.2_102 bioperl-1.5.2
	cd "${WORKDIR}"/"${PN}"-"${PV}"
	sed -e "s@^\$build->add_post_install_script('maintenance/symlink_script.pl')@#\$build->add_post_install_script('maintenance/symlink_script.pl')@" -i Build.PL
}

#src_compile() {
#	# FIXME: answer no to the quetion whether one has ISO-8859-1 terminal. At least some of us have UTF-8
#	# FIXME: we want to install into /usr/lib/perl5/vendor_perl/5.8.8/Bio and not into /usr/lib/perl5/Bio/
#	echo "\n\n" | perl Build.PL ${myconf} \
#	         --install_base ${D}/usr --installdirs=vendor
#}
#
#src_test() {
#	perl-module_src_test || die "Test failed"
#}
#
#src_install() {
#	mydoc="AUTHORS BUGS FAQ"
#	#perl-module_src_install
#	./Build install
#	newenvd "${FILESDIR}"/bioperl 22bioperl
#	
#}

pkg_preinst() {
	cd ${D}/usr/bin || die "Cannot chdir to ${D}/usr/bin"
	dosym bp_bulk_load_gff.pl /usr/bin/bp_pg_bulk_load_gff.pl || die "Cannot create symlink /usr/bin/bp_bulk_load_gff.pl /usr/bin/bp_pg_bulk_load_gff.pl"
	newenvd "${FILESDIR}"/bioperl 22bioperl
}