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Gentoo's Bugzilla – Attachment 179059 Details for
Bug 179110
sci-biology/bioperl-1.6.0: new version bump
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bioperl-1.5.2.ebuild
bioperl-1.5.2.ebuild (text/plain), 2.06 KB, created by
Martin Mokrejš
on 2009-01-20 01:56:12 UTC
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Description:
bioperl-1.5.2.ebuild
Filename:
MIME Type:
Creator:
Martin Mokrejš
Created:
2009-01-20 01:56:12 UTC
Size:
2.06 KB
patch
obsolete
># Copyright 1999-2006 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild,v 1.5 2006/12/10 19:23:34 ribosome Exp $ > >inherit perl-module eutils > >DESCRIPTION="Perl tools for bioinformatics - Core modules" >HOMEPAGE="http://www.bioperl.org/" >SRC_URI="http://www.bioperl.org/DIST/bioperl-1.5.2_102.tar.bz2" > >LICENSE="Artistic GPL-2" >SLOT="0" >KEYWORDS="~amd64 ~ppc ~sparc ~x86" >IUSE="mysql gd" > ># TODO: upgrade somehow CPAN module of dev-lang/perl-5.8.8-r5 from 1.76_02 to >= 1.81 ># perl -MCPAN -e "install Bundle::CPAN" >DEPEND=" > virtual/perl-File-Temp > dev-perl/HTML-Parser > dev-perl/IO-String > dev-perl/IO-stringy > dev-perl/SOAP-Lite > virtual/perl-Storable > dev-perl/XML-DOM > dev-perl/XML-Parser > dev-perl/XML-Writer > dev-perl/XML-Twig > dev-perl/libxml-perl > dev-perl/libwww-perl > dev-perl/Graph > dev-perl/Text-Shellwords > ~sci-libs/io_lib-1.8.12b > !=sci-libs/io_lib-1.9* > gd? ( > >=dev-perl/GD-1.32-r1 > dev-perl/SVG > dev-perl/GD-SVG > ) > mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 ) > dev-libs/expat" > >src_unpack() { > unpack ${A} > mv bioperl-1.5.2_102 bioperl-1.5.2 > cd "${WORKDIR}"/"${PN}"-"${PV}" > sed -e "s@^\$build->add_post_install_script('maintenance/symlink_script.pl')@#\$build->add_post_install_script('maintenance/symlink_script.pl')@" -i Build.PL >} > >#src_compile() { ># # FIXME: answer no to the quetion whether one has ISO-8859-1 terminal. At least some of us have UTF-8 ># # FIXME: we want to install into /usr/lib/perl5/vendor_perl/5.8.8/Bio and not into /usr/lib/perl5/Bio/ ># echo "\n\n" | perl Build.PL ${myconf} \ ># --install_base ${D}/usr --installdirs=vendor >#} ># >#src_test() { ># perl-module_src_test || die "Test failed" >#} ># >#src_install() { ># mydoc="AUTHORS BUGS FAQ" ># #perl-module_src_install ># ./Build install ># newenvd files/bioperl bioperl >#} > >pkg_preinst() { > cd ${D}/usr/bin || die "Cannot chdir to ${D}/usr/bin" > dosym bp_bulk_load_gff.pl /usr/bin/bp_pg_bulk_load_gff.pl || die "Cannot create symlink /usr/bin/bp_bulk_load_gff.pl /usr/bin/bp_pg_bulk_load_gff.pl" >}
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bug 179110
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119710
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