Attachment #191208 for bug #269754

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inherit autotools bash-completion eutils fortran multilib

TEST_PV="4.0.4"
DESCRIPTION="The ultimate molecular dynamics simulation package"
HOMEPAGE="http://www.gromacs.org/"
SRC_URI="ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz
		test? ( ftp://ftp.gromacs.org/pub/tests/gmxtest-${TEST_PV}.tgz )
		doc? ( ftp://ftp.gromacs.org/pub/manual/manual-4.0.pdf )"

LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~ppc64 sparc ~x86"
IUSE="X blas dmalloc doc -double-precision +fftw fkernels gsl lapack mpi +single-precision static test +xml zsh-completion"
RESTRICT="test"

DEPEND="app-shells/tcsh
	X? ( x11-libs/libX11 )


src_prepare() {

	epatch "${FILESDIR}/${PN}-4.0.4-sparc-cyclecounter.patch"
	# Fix typos in a couple of files.
	sed -e "s:+0f:-f:" -i share/tutor/gmxdemo/demo \
		|| die "Failed to fixup demo script."

	-i src/tools/Makefile.am \
	|| die "sed tools/Makefile.am failed"

	use fkernels && epatch "${FILESDIR}/${PN}-4.0.4-configure-gfortran.patch"

	eautoreconf

	cd "${WORKDIR}"

	use test && mv gmxtest "${P}"
	mv "${P}" "${P}-single"
	if ( use double-precision ) ; then
		einfo "Moving sources for Multiprecision Build"

	myconf="--datadir=/usr/share \
			--bindir=/usr/bin \
			--libdir=/usr/$(get_libdir) \
			--docdir=/usr/share/doc/"${PF}" \
			$(use_with dmalloc) \
			$(use_with fftw fft fftw3) \
			$(use_with gsl) \

src_test() {
	if use single-precision ; then
		export PATH="${WORKDIR}/${P}-single/src/kernel:${WORKDIR}/${P}-single/src/tools:$PATH"
		cd "${WORKDIR}"/"${P}"-single
		emake -j1 tests || die "Single Precision test failed"
		./gmxtest.pl simple || die "Single Precision test failed"
	fi

	if use double-precision ; then
		export PATH="${WORKDIR}/${P}-double/src/kernel:${WORKDIR}/${P}-double/src/tools:$PATH"
		cd "${WORKDIR}"/"${P}"-double
		emake -j1 tests || die "Double Precision test failed"
		#test is broken, only do simple tests
		./gmxtest.pl -double simple || die "Double Precision test failed"
	fi
}


	rm -r "${D}"/usr/bin/completion.*

	dodoc AUTHORS INSTALL README
	use doc && dodoc "${DISTDIR}"/manual-4.0.pdf
		# Move html and leave examples and templates under /usr/share/gromacs.
		mv "${D}"/usr/share/"${PN}"/html "${D}"/usr/share/doc/"${PF}"/
		dodoc "${DISTDIR}"/manual-4.0.pdf
	fi
}

pkg_postinst() {

Return to bug 269754

Lines 8-23 Link Here

(-)gromacs-4.0.4.ebuild (-15 / +13 lines)
8		8
9	inherit autotools bash-completion eutils fortran multilib	9	inherit autotools bash-completion eutils fortran multilib
10		10
		11	TEST_PV="4.0.4"
11	DESCRIPTION="The ultimate molecular dynamics simulation package"	12	DESCRIPTION="The ultimate molecular dynamics simulation package"
12	HOMEPAGE="http://www.gromacs.org/"	13	HOMEPAGE="http://www.gromacs.org/"
13	SRC_URI="ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz	14	SRC_URI="ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz
14	test? ( ftp://ftp.gromacs.org/pub/tests/gmxtest-${PV}.tgz )	15	test? ( ftp://ftp.gromacs.org/pub/tests/gmxtest-${TEST_PV}.tgz )
15	doc? ( ftp://ftp.gromacs.org/pub/manual/manual-4.0.pdf )"	16	doc? ( ftp://ftp.gromacs.org/pub/manual/manual-4.0.pdf )"
16		17
17	LICENSE="GPL-2"	18	LICENSE="GPL-2"
18	SLOT="0"	19	SLOT="0"
19	KEYWORDS="~alpha ~amd64 ~ppc64 sparc ~x86"	20	KEYWORDS="~alpha ~amd64 ~ppc64 sparc ~x86"
20	IUSE="X blas dmalloc doc -double-precision +fftw fkernels gsl lapack mpi +single-precision static test +xml zsh-completion"	21	IUSE="X blas dmalloc doc -double-precision +fftw fkernels gsl lapack mpi +single-precision static test +xml zsh-completion"
		22	RESTRICT="test"
21		23
22	DEPEND="app-shells/tcsh	24	DEPEND="app-shells/tcsh
23	X? ( x11-libs/libX11 )	25	X? ( x11-libs/libX11 )
Lines 33-39 Link Here
33		35
34	src_prepare() {	36	src_prepare() {
35		37
36	epatch "${FILESDIR}/${P}-sparc-cyclecounter.patch"	38	epatch "${FILESDIR}/${PN}-4.0.4-sparc-cyclecounter.patch"
37	# Fix typos in a couple of files.	39	# Fix typos in a couple of files.
38	sed -e "s:+0f:-f:" -i share/tutor/gmxdemo/demo \	40	sed -e "s:+0f:-f:" -i share/tutor/gmxdemo/demo \
39	\|\| die "Failed to fixup demo script."	41	\|\| die "Failed to fixup demo script."
Lines 55-65 Link Here
55	-i src/tools/Makefile.am \	57	-i src/tools/Makefile.am \
56	\|\| die "sed tools/Makefile.am failed"	58	\|\| die "sed tools/Makefile.am failed"
57		59
58	use fkernels && epatch "${FILESDIR}/${P}-configure-gfortran.patch"	60	use fkernels && epatch "${FILESDIR}/${PN}-4.0.4-configure-gfortran.patch"
59		61
60	eautoreconf	62	eautoreconf
61		63
62	cd "${WORKDIR}"	64	cd "${WORKDIR}"
		65
		66	use test && mv gmxtest "${P}"
63	mv "${P}" "${P}-single"	67	mv "${P}" "${P}-single"
64	if ( use double-precision ) ; then	68	if ( use double-precision ) ; then
65	einfo "Moving sources for Multiprecision Build"	69	einfo "Moving sources for Multiprecision Build"
Lines 115-120 Link Here
115	myconf="--datadir=/usr/share \	119	myconf="--datadir=/usr/share \
116	--bindir=/usr/bin \	120	--bindir=/usr/bin \
117	--libdir=/usr/$(get_libdir) \	121	--libdir=/usr/$(get_libdir) \
		122	--docdir=/usr/share/doc/"${PF}" \
118	$(use_with dmalloc) \	123	$(use_with dmalloc) \
119	$(use_with fftw fft fftw3) \	124	$(use_with fftw fft fftw3) \
120	$(use_with gsl) \	125	$(use_with gsl) \
Lines 174-190 Link Here
174	src_test() {	179	src_test() {
175	if use single-precision ; then	180	if use single-precision ; then
176	export PATH="${WORKDIR}/${P}-single/src/kernel:${WORKDIR}/${P}-single/src/tools:$PATH"	181	export PATH="${WORKDIR}/${P}-single/src/kernel:${WORKDIR}/${P}-single/src/tools:$PATH"
177	cd "${WORKDIR}/gmxtest"	182	cd "${WORKDIR}"/"${P}"-single
178	#test is broken, only do simple tests	183	emake -j1 tests \|\| die "Single Precision test failed"
179	./gmxtest.pl simple \|\| die "Single Precision test failed"
180	fi	184	fi
181		185
182	if use double-precision ; then	186	if use double-precision ; then
183	export PATH="${WORKDIR}/${P}-double/src/kernel:${WORKDIR}/${P}-double/src/tools:$PATH"	187	export PATH="${WORKDIR}/${P}-double/src/kernel:${WORKDIR}/${P}-double/src/tools:$PATH"
184	cd "${WORKDIR}/gmxtest"	188	cd "${WORKDIR}"/"${P}"-double
185	use single-precision && ./gmxtest.pl clean	189	emake -j1 tests \|\| die "Double Precision test failed"
186	#test is broken, only do simple tests
187	./gmxtest.pl -double simple \|\| die "Double Precision test failed"
188	fi	190	fi
189	}	191	}
190		192
Lines 213-223 Link Here
213	rm -r "${D}"/usr/bin/completion.*	215	rm -r "${D}"/usr/bin/completion.*
214		216
215	dodoc AUTHORS INSTALL README	217	dodoc AUTHORS INSTALL README
216	if use doc; then	218	use doc && dodoc "${DISTDIR}"/manual-4.0.pdf
217	# Move html and leave examples and templates under /usr/share/gromacs.
218	mv "${D}"/usr/share/"${PN}"/html "${D}"/usr/share/doc/"${PF}"/
219	dodoc "${DISTDIR}"/manual-4.0.pdf
220	fi
221	}	219	}
222		220
223	pkg_postinst() {	221	pkg_postinst() {