Emerge fails during the building step (linking libcip.a) when using "-j2" as a make option. Removing the "-j2" from MAKEOPTS corrects the problem. This situation was reproduced on a AMD64 box. Reproducible: Always Steps to Reproduce: 1.add sci-chemistry/molmol ~x86 to package.keyword 2.emerge -v molmol 3. Actual Results: make[4]: Entering directory `/var/tmp/portage/molmol-2k_p2/work/src/main' i686-pc-linux-gnu-gcc -I../../tools/include -I../../sg/include -I../../include -O3 -march=athlon-xp -pipe -fomit-frame-pointer -funit-at-a-time -ffast-math -funroll-loops -fpeel-loops -funswitch-loops -fprefetch-loop-arrays -frerun-loop-opt -frerun-cse-after-loop -mmmx -msse -m3dnow -I../../tools/include -I../../sg/include -I../../include -c -o MolMol.o MolMol.c i686-pc-linux-gnu-gcc -I../../tools/include -I../../sg/include -I../../include -O3 -march=athlon-xp -pipe -fomit-frame-pointer -funit-at-a-time -ffast-math -funroll-loops -fpeel-loops -funswitch-loops -fprefetch-loop-arrays -frerun-loop-opt -frerun-cse-after-loop -mmmx -msse -m3dnow -I../../tools/include -I../../sg/include -I../../include -c -o MolInit.o MolInit.c i686-pc-linux-gnu-gcc -o molmol -I../../tools/include -I../../sg/include -I../../include -O3 -march=athlon-xp -pipe -fomit-frame-pointer -funit-at-a-time -ffast-math -funroll-loops -fpeel-loops -funswitch-loops -fprefetch-loop-arrays -frerun-loop-opt -frerun-cse-after-loop -mmmx -msse -m3dnow MolMol.o MolInit.o ../../lib/libcip.a ../../lib/libcmd.a ../../lib/libui.a ../../lib/libgraph.a ../../lib/libio.a ../../lib/libpu.a ../../lib/libcalc.a ../../lib/libprim.a ../../lib/libdata.a ../../lib/libattr.a ../../lib/libfileio.a ../../lib/libos.a ../../sg/lib/libsg.a ../../tools/lib/libtools.a -ltiff -ljpeg -lpng -lz -lGLw -lGLU -lGL -lXm -lXpm -lXt -lXext -lX11 -lm ../../lib/libcip.a(Cip.o)(.data+0x2a4): undefined reference to `ExAutoScale' ../../lib/libcip.a(Cip.o)(.data+0x2d4): undefined reference to `ExBondMode' ../../lib/libcip.a(Cip.o)(.data+0x454): undefined reference to `ExCenter' ../../lib/libcip.a(Cip.o)(.data+0x6c4): undefined reference to `ExDrawDelay' ../../lib/libcip.a(Cip.o)(.data+0x6dc): undefined reference to `ExDrawPrec' ../../lib/libcip.a(Cip.o)(.data+0x6f4): undefined reference to `ExDrawSize' ../../lib/libcip.a(Cip.o)(.data+0x82c): undefined reference to `ExFullscreen' ../../lib/libcip.a(Cip.o)(.data+0x844): undefined reference to `ExGroup' ../../lib/libcip.a(Cip.o)(.data+0x9c4): undefined reference to `ExLengthBond' ../../lib/libcip.a(Cip.o)(.data+0xc64): undefined reference to `ExMoveInit' ../../lib/libcip.a(Cip.o)(.data+0xc94): undefined reference to `ExMove' ../../lib/libcip.a(Cip.o)(.data+0xcac): undefined reference to `ExMove' ../../lib/libcip.a(Cip.o)(.data+0xcc4): undefined reference to `ExMove' ../../lib/libcip.a(Cip.o)(.data+0x1294): undefined reference to `ExRotateInit' ../../lib/libcip.a(Cip.o)(.data+0x12ac): undefined reference to `ExRotate' ../../lib/libcip.a(Cip.o)(.data+0x12c4): undefined reference to `ExRotate' ../../lib/libcip.a(Cip.o)(.data+0x12dc): undefined reference to `ExRotate' ../../lib/libcip.a(Cip.o)(.data+0x14ec): undefined reference to `ExStereo' ../../lib/libcip.a(Cip.o)(.data+0x1894): undefined reference to `ExZoom' ../../lib/libcip.a(Cip.o)(.data+0x18ac): undefined reference to `ExZoom' collect2: ld returned 1 exit status make[4]: *** [molmol] Error 1 make[4]: Leaving directory `/var/tmp/portage/molmol-2k_p2/work/src/main' make[3]: *** [main] Error 2 make[3]: *** Waiting for unfinished jobs.... make[4]: Leaving directory `/var/tmp/portage/molmol-2k_p2/work/src/cmdfig' make[3]: Leaving directory `/var/tmp/portage/molmol-2k_p2/work/src' make[2]: *** [default] Error 2 make[2]: Leaving directory `/var/tmp/portage/molmol-2k_p2/work/src' make[1]: *** [src] Error 2 make[1]: Leaving directory `/var/tmp/portage/molmol-2k_p2/work' make: *** [default] Error 2 Expected Results: Compile and emerge. Portage 2.0.51.22-r1 (default-linux/x86/2005.0, gcc-3.4.3-20050110, glibc-2.3.4.20041102-r1, 2.6.12-gentoo-r4-fst i686) ================================================================= System uname: 2.6.12-gentoo-r4-fst i686 AMD Sempron(TM) 2800+ Gentoo Base System version 1.6.12 ccache version 2.3 [enabled] dev-lang/python: 2.3.5 sys-apps/sandbox: 1.2.10 sys-devel/autoconf: 2.13, 2.59-r6 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.5 sys-devel/binutils: 2.15.92.0.2-r10 sys-devel/libtool: 1.5.18-r1 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-O3 -march=athlon-xp -pipe -fomit-frame-pointer -funit-at-a-time -ffast-math -funroll-loops -fpeel-loops -funswitch-loops -fprefetch-loop-arrays -frerun-loop-opt -frerun-cse-after-loop -mmmx -msse -m3dnow" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-O3 -march=athlon-xp -pipe -pipe -fomit-frame-pointer -funit-at-a-time -ffast-math -funroll-loops -fpeel-loops -funswitch-loops -fprefetch-loop-arrays -frerun-loop-opt -frerun-cse-after-loop -mmmx -msse -m3dnow" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig ccache distlocks sandbox sfperms strict" GENTOO_MIRRORS="http://www.las.ic.unicamp.br/pub/gentoo/ ftp://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://mirrors.sec.informatik.tu-darmstadt.de/gentoo/ http://mirror.datapipe.net/gentoo ftp://ftp.las.ic.unicamp.br/pub/gentoo/ http://gentoo.oregonstate.edu http://www.ibiblio.org/pub/Linux/distributions/gentoo" LINGUAS="en pt_BR" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="3dnow 3dnowex GAPING_SECURITY_HOLE S3TC X Xaw3d a52 aac aalib acl acpi acpi4linux aim alsa amd aotuv arts asm async atlas auctex audiofile avi berkdb bidi bitmap-fonts blas bootsplash bzip2 bzlib c++ cap ccache cddb cdparanoia cdr cdrom cgi chroot clisp cln cmucl codecs crypt ctype cups dga divx4linux dnd dnsdb doc dv dvd dvdr dvdread edl emacs emul-linux encode evo expat ext-png ext-zlib f2c f77 faad fastcgi fbcon fbdev ffmpeg fftw flac font-server foomaticdb foreign-package fortran freetype gcl gd gdbm gif gimp gimpprint ginac glade glgd glut gnomedb gnuplot gphoto2 gpm gsl gtk gtk2 hal hdf5 icq idea imagemagick imap imlib imlib2 innodb java javascript jpeg jpeg2k kde latex lcms leim libcaca libedit libgda live lm_sensors ltsp lzo mad matroska md5sum mdb mime ming mmx mmx2 mmxext mng motif mozilla mozsvg mp3 mpeg mpeg4 mplayer msn mupad-noscilab ncurses network nls nomalloccheck noreiserfs nptl nptlonly nvidia objc offensive ogg oggvorbis openal opengl operanom2 oscar pam parse-clocks pcre pdflib perl php pic plotutils png posix povray ppds pthreads python qt readline roundrobin rss rtc samba sasl scanner sdl skey slang slp speedo speex spell sse ssl stencil-buffer svg sysvipc t1lib tcltk tcpd tetex tga theora tiff tlen transcode truetype truetype-fonts type1 type1-fonts unicode usb v4l v4l2 vcd videos vim-with-x vorbis wmf wsconvert wxwindows x86 xchatdccserver xchattext xine xml xml2 xmlrpc xmms xosd xscreensaver xsl xv xvid yahoo yaz zlib linguas_en linguas_pt_BR userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS
Fixed, thanks for the report!