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Bug#: 92832
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Status: RESOLVED
Resolution: FIXED
Assigned To: Gentoo Linux High-Performance Clustering Team <hp-cluster@gentoo.org>
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Reporter: t35t0r <t35t0r@gmail.com>
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Filename Description Type Creator Created Size Actions
lam-mpi-7.1.1-shared-romio.patch-17493.out patch log text/plain t35t0r 2005-05-16 13:47 0000 4.56 KB Details
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Bug 92832 depends on: Show dependency tree
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Description:   Opened: 2005-05-16 13:45 0000
/root# emerge -avuD world

These are the packages that I would merge, in order:

Calculating world dependencies ...done!
[ebuild     U ] sys-cluster/lam-mpi-7.1.1 [7.0.4] +crypt -debug 0 kB

Total size of downloads: 0 kB

Do you want me to merge these packages? [Yes/No] Yes
>>> emerge (1 of 1) sys-cluster/lam-mpi-7.1.1 to /
>>> md5 files   ;-) lam-mpi-7.0.4-r1.ebuild
>>> md5 files   ;-) lam-mpi-7.0.6.ebuild
>>> md5 files   ;-) lam-mpi-7.1.ebuild
>>> md5 files   ;-) lam-mpi-7.1.1.ebuild
>>> md5 files   ;-) lam-mpi-7.0.4.ebuild
>>> md5 files   ;-) ChangeLog
>>> md5 files   ;-) metadata.xml
>>> md5 files   ;-) files/digest-lam-mpi-7.1
>>> md5 files   ;-) files/lam-mpi-7.1.1-shared-romio.patch
>>> md5 files   ;-) files/digest-lam-mpi-7.0.4-r1
>>> md5 files   ;-) files/digest-lam-mpi-7.0.4
>>> md5 files   ;-) files/digest-lam-mpi-7.0.6
>>> md5 files   ;-) files/digest-lam-mpi-7.1.1
>>> md5 src_uri ;-) lam-7.1.1.tar.bz2
QA Notice: USE Flag '' not in IUSE for sys-cluster/lam-mpi-7.1.1
 * You need one of these Fortran Compilers: g77
 * Installed are:  g77
>>> Unpacking source...
>>> Unpacking lam-7.1.1.tar.bz2 to /var/tmp/portage/lam-mpi-7.1.1/work
 * Applying lam-mpi-7.1.1-shared-romio.patch ...

 * Failed Patch: lam-mpi-7.1.1-shared-romio.patch !
 *  ( /usr/portage/sys-cluster/lam-mpi/files/lam-mpi-7.1.1-shared-romio.patch )
 *
 * Include in your bugreport the contents of:
 *
 *   /var/tmp/portage/lam-mpi-7.1.1/temp/lam-mpi-7.1.1-shared-romio.patch-17493.out


!!! ERROR: sys-cluster/lam-mpi-7.1.1 failed.
!!! Function epatch, Line 358, Exitcode 0
!!! Failed Patch: lam-mpi-7.1.1-shared-romio.patch!

Reproducible: Always
Steps to Reproduce:
1. update lam-mpi to 7.1.1
2. get error that it cannot patch


Actual Results:  
got an error that that shows that the patch file could not patch

Expected Results:  
Should have completed the patch and continued the compile

------- Comment #1 From t35t0r 2005-05-16 13:47:59 0000 -------
Created an attachment (id=59056) [edit]
patch log

some parts of the patch could not be applied so the ebuild did not continue

------- Comment #2 From Garth 2005-05-16 18:43:03 0000 -------
I am getting exactly the same problem, with the same patch log. However, I'm 
making an install from new, and not an upgrade. 
 
emerge info follows: 
 
Portage 2.0.51.19 (default-linux/amd64/2005.0, gcc-3.4.3, 
glibc-2.3.4.20041102-r1, 2.6.11-gentoo-r7 x86_64) 
================================================================= 
System uname: 2.6.11-gentoo-r7 x86_64 AMD Opteron(tm) Processor 846 
Gentoo Base System version 1.4.16 
Python:              dev-lang/python-2.3.5 [2.3.5 (#1, May 16 2005, 17:45:01)] 
distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) 
[disabled] 
dev-lang/python:     2.3.5 
sys-apps/sandbox:    [Not Present] 
sys-devel/autoconf:  2.13, 2.59-r6 
sys-devel/automake:  1.5, 1.8.5-r3, 1.9.5, 1.6.3, 1.7.9-r1, 1.4_p6 
sys-devel/binutils:  2.15.92.0.2-r8 
sys-devel/libtool:   1.5.16 
virtual/os-headers:  2.6.8.1-r4 
ACCEPT_KEYWORDS="amd64" 
AUTOCLEAN="yes" 
CFLAGS="-march=opteron -mtune=opteron -O3 -mmmx -msse -msse2 -m3dnow 
-fforce-addr -pipe" 
CHOST="x86_64-pc-linux-gnu" 
CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config /usr/lib/X11/xkb /usr/share/config /var/qmail/control" 
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" 
CXXFLAGS="-march=opteron -mtune=opteron -O3 -mmmx -msse -msse2 -m3dnow 
-fforce-addr -pipe" 
DISTDIR="/usr/portage/distfiles" 
FEATURES="autoaddcvs autoconfig ccache distlocks sandbox strict" 
GENTOO_MIRRORS="ftp://gentoo.mirrors.pair.com/ 
http://gentoo.chem.wisc.edu/gentoo/ http://gentoo.oregonstate.edu 
http://www.ibiblio.org/pub/Linux/distributions/gentoo" 
MAKEOPTS="-j5" 
PKGDIR="/usr/portage/packages" 
PORTAGE_TMPDIR="/var/tmp" 
PORTDIR="/usr/portage" 
PORTDIR_OVERLAY="/usr/my.portage" 
SYNC="rsync://rsync.gentoo.org/gentoo-portage" 
USE="X Xaw3d aalib acpi amd64 atlas berkdb bitmap-fonts crypt f77 fam fastcgi 
fftw font-server fortran gd gdbm gif ginac gmp gpm imagemagick imlib ipv6 java 
jikes jp2 jpeg lcms libg++ libwww lzw lzw-tiff mp3 mpi ncurses nls nocardbus 
ogg opengl pam pdflib perl pic png python readline sasl sdl spell ssl szip 
tcltk tcpdtiff truetype truetype-fonts type1-fonts unicode usb userlocales wmf 
xine xml xml2 xpm xrandr xv xvid zlib userland_GNU kernel_linux elibc_glibc" 
Unset:  ASFLAGS, CBUILD, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS 
 
 

------- Comment #3 From Rutger Hendriks 2005-05-23 01:25:55 0000 -------
I was thinking since the Changelog mentions Danny van Dyk adding the patch:

  15 May 2005; Danny van Dyk <kugelfang@gentoo.org> lam-mpi-7.1.1.ebuild:
  Marked stable on amd64.

  15 May 2005; Danny van Dyk <kugelfang@gentoo.org>
  +files/lam-mpi-7.1.1-shared-romio.patch, lam-mpi-7.1.1.ebuild:
  Fixed BUG #88110. liblammpio will now be built as static and shared library.

it might be a good idea to get him involved so I took the liberty of adding him
to CC

------- Comment #4 From Donnie Berkholz 2005-05-24 16:17:11 0000 -------
Just remade the patch, try in an hour.

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