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Bug 904691 - =sci-libs/hdf5-1.14.0 reports its install path incorrectly (possibly sci-libs/itk error instead)
Summary: =sci-libs/hdf5-1.14.0 reports its install path incorrectly (possibly sci-libs...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2023-04-20 02:28 UTC by Horea Christian
Modified: 2023-04-20 19:37 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log of program trying to link hdf5 (build.log,35.38 KB, text/x-log)
2023-04-20 02:30 UTC, Horea Christian
Details

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Description Horea Christian 2023-04-20 02:28:59 UTC
The log showcasing the issue is obtained by emerging sci-libs/itk::science , and it might be an issue with that package, though I'm fairly sure it isn't.

The relevant snippet is:

```
CMake Error in Modules/IO/HDF5/src/CMakeLists.txt:
  Imported target "hdf5::hdf5_cpp" includes non-existent path

    "/var/tmp/portage/sci-libs/hdf5-1.14.0/work/hdf5-1.14.0/src/H5FDsubfiling"
```

Note that for some reason sci-libs/itk is looking for ITK in its WORKDIR.
This is nowhere to be found in the ebuild and it goes away if =sci-libs/hdf5-1.12.2-r6 is installed instead. Which, obviously, does not provide the WORKDIR file either.

Best I could come up with is that maybe hdf5 reports its path... somehow 🤔 and the new one reports the WORKDIR path instead of the actual path under which it's installed...

Reproducible: Always
Comment 1 Horea Christian 2023-04-20 02:30:17 UTC
Created attachment 860419 [details]
build log of program trying to link hdf5
Comment 2 Larry the Git Cow gentoo-dev 2023-04-20 19:37:06 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=995c8aefa871da5ad197b29b782ff9e2d1e46e83

commit 995c8aefa871da5ad197b29b782ff9e2d1e46e83
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2023-04-20 19:34:45 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2023-04-20 19:36:51 +0000

    sci-libs/hdf5: fix installed CMake files (exclude temporary include dir for build)
    
    Closes: https://bugs.gentoo.org/904515
    Closes: https://bugs.gentoo.org/904691
    Signed-off-by: Sam James <sam@gentoo.org>

 .../hdf5/files/hdf5-1.14.0-fix-include-path.patch  | 34 ++++++++++++++++++++++
 .../{hdf5-1.14.0.ebuild => hdf5-1.14.0-r1.ebuild}  |  1 +
 2 files changed, 35 insertions(+)