807883 – sci-chemistry/gromacs-2020.4 - * patch -p1 failed with /var/tmp/portage/sci-chemistry/gromacs-2020.4/files/gromacs-2020-pytest.pa

Bug 807883 - sci-chemistry/gromacs-2020.4 - * patch -p1 failed with /var/tmp/portage/sci-chemistry/gromacs-2020.4/files/gromacs-2020-pytest.pa

Summary: sci-chemistry/gromacs-2020.4 - * patch -p1 failed with /var/tmp/portage/sci-...

Status:	RESOLVED FIXED

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	Normal normal (vote)
Assignee:	Alexey Shvetsov

URL:
Whiteboard:
Keywords:

Depends on:
Blocks:

Reported:	2021-08-12 13:01 UTC by Toralf Förster
Modified:	2022-02-16 09:11 UTC (History)
CC List:	1 user (show)

See Also:
Package list:
Runtime testing required:	---

Attachments
emerge-info.txt (emerge-info.txt,15.36 KB, text/plain) 2021-08-12 13:01 UTC, Toralf Förster	Details
emerge-history.txt (emerge-history.txt,88.11 KB, text/plain) 2021-08-12 13:01 UTC, Toralf Förster	Details
environment (environment,155.68 KB, text/plain) 2021-08-12 13:01 UTC, Toralf Förster	Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,12.34 KB, application/x-bzip) 2021-08-12 13:01 UTC, Toralf Förster	Details
sci-chemistry:gromacs-2020.4:20210812-113435.log (sci-chemistry:gromacs-2020.4:20210812-113435.log,2.83 KB, text/plain) 2021-08-12 13:01 UTC, Toralf Förster	Details
temp.tar.bz2 (temp.tar.bz2,35.00 KB, application/x-bzip) 2021-08-12 13:01 UTC, Toralf Förster	Details
View All Add an attachment (proposed patch, testcase, etc.)

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Description Toralf Förster gentoo-dev

2021-08-12 13:01:39 UTC

 [ !! ]
 * ERROR: sci-chemistry/gromacs-2020.4::gentoo failed (prepare phase):
 *   patch -p1  failed with /var/tmp/portage/sci-chemistry/gromacs-2020.4/files/gromacs-2020-pytest.patch
 * 
 * Call stack:
 *               ebuild.sh, line  127:  Called src_prepare
 *             environment, line 3951:  Called cmake_src_prepare

  -------------------------------------------------------------------

  This is an stable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_systemd-j3_stable-20210811-190454

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.0 *
/usr/lib/llvm/12
12.0.1
Python 3.9.6
Available Ruby profiles:
  [1]   ruby26 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.53.0 *
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.292_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm


  HEAD of ::gentoo
commit 1e7da09ed15d941c93aa76f636354af297cf4e27
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Thu Aug 12 11:22:01 2021 +0000

    2021-08-12 11:21:59 UTC

emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2020.4  USE="X custom-cflags doc fftw gmxapi gmxapi-legacy hwloc lmfit offensive openmp single-precision threads tng -blas -build-manual (-cuda) -double-precision -lapack (-mkl) -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -fma4" PYTHON_SINGLE_TARGET="python3_9 -python3_8"

Comment 1 Toralf Förster gentoo-dev

2021-08-12 13:01:40 UTC

Created attachment 732455 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2021-08-12 13:01:42 UTC

Created attachment 732457 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2021-08-12 13:01:43 UTC

Created attachment 732459 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2021-08-12 13:01:44 UTC

Created attachment 732461 [details]
etc.portage.tar.bz2

Comment 5 Toralf Förster gentoo-dev

2021-08-12 13:01:45 UTC

Created attachment 732463 [details]
sci-chemistry:gromacs-2020.4:20210812-113435.log

Comment 6 Toralf Förster gentoo-dev

2021-08-12 13:01:47 UTC

Created attachment 732465 [details]
temp.tar.bz2

Comment 7 Alexey Shvetsov archtester

2022-02-16 09:11:14 UTC

Should be fixed