Bugzilla Bug 79004

instalation of R-2.0.0 on amd64 ends with and error while trying to install
files from the afm directory, several permission denides are reported
(compilation in /var/temp/portage was performed successfully, .compiled exits)

installing afm ...
ACCESS DENIED  unlink:    /usr/lib/R/afm/agd_____.afm
/bin/install: cannot remove `//usr/lib/R/afm/agd_____.afm': Permission denied
ACCESS DENIED  unlink:    /usr/lib/R/afm/agdo____.afm
/bin/install: cannot remove `//usr/lib/R/afm/agdo____.afm': Permission denied
...
/bin/install: cannot remove `//usr/lib/R/afm/MacRoman.enc': Permission denied
ACCESS DENIED  unlink:    /usr/lib/R/afm/PDFDoc.enc
/bin/install: cannot remove `//usr/lib/R/afm/PDFDoc.enc': Permission denied
ACCESS DENIED  unlink:    /usr/lib/R/afm/WinAnsi.enc
/bin/install: cannot remove `//usr/lib/R/afm/WinAnsi.enc': Permission denied
make[1]: *** [install-sources] Error 1
make[1]: Leaving directory `/var/tmp/portage/R-2.0.0/work/R-2.0.0/afm'
make: *** [install] Error 1

!!! ERROR: dev-lang/R-2.0.0 failed.
!!! Function src_install, Line 93, Exitcode 2
!!! Installation Failed
!!! If you need support, post the topmost build error, NOT this status message.

--------------------------- ACCESS VIOLATION SUMMARY ---------------------------
LOG FILE = "/tmp/sandbox-dev-lang_-_R-2.0.0-17618.log"

unlink:    /usr/lib/R/afm/agd_____.afm
unlink:    /usr/lib/R/afm/agdo____.afm
unlink:    /usr/lib/R/afm/agw_____.afm
unlink:    /usr/lib/R/afm/agwo____.afm
unlink:    /usr/lib/R/afm/bkd_____.afm
...
unlink:    /usr/lib/R/afm/MacRoman.enc
unlink:    /usr/lib/R/afm/PDFDoc.enc
unlink:    /usr/lib/R/afm/WinAnsi.enc
--------------------------------------------------------------------------------


Reproducible: Always
Steps to Reproduce:
1. emerge -va R
2.
3.

Actual Results:  
compilation of R was successful, but instalation failed

Expected Results:  
successful emerge

Portage 2.0.51-r3 (default-linux/amd64/2004.3, gcc-3.4.3,
glibc-2.3.4.20040808-r1, 2.6.9-gentoo-r12 x86_64)
=================================================================
System uname: 2.6.9-gentoo-r12 x86_64 AMD Opteron(tm) Processor 244
Gentoo Base System version 1.4.16
Autoconf: sys-devel/autoconf-2.59-r5
Automake: sys-devel/automake-1.8.5-r1
Binutils: sys-devel/binutils-2.15.90.0.1.1-r3
Headers:  sys-kernel/linux26-headers-2.6.8.1-r2
Libtools: sys-devel/libtool-1.5.2-r7
ACCEPT_KEYWORDS="amd64"
AUTOCLEAN="yes"
CFLAGS="-O2"
CHOST="x86_64-pc-linux-gnu"
COMPILER=""
CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config
/usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown
/usr/kde/3/share/config /usr/lib/mozilla/defaults/pref /usr/share/config
/var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d"
CXXFLAGS="-O2"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs autoconfig ccache distlocks sandbox"
GENTOO_MIRRORS="ftp://ftp.sh.cvut.cz/MIRRORS/gentoo/gentoo
ftp://ftp.fi.muni.cz/pub/linux/gentoo/
ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo http://gentoo.ynet.sk/pub/
ftp://gentoo.inode.at/source/ ftp://trumpetti.atm.tut.fi/gentoo/
ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo/
ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo/"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="amd64 X acpi alsa berkdb bitmap-fonts bzlib crypt emacs emul-linux-x86 f77
fam font-server fortran gdbm gif gpm gtk ipv6 java jp2 jpeg kde latex libwww lzw
lzw-tiff motif mozilla multilib mysql ncurses nls opengl oss pam perl png python
qt readline ssl tcpd tiff truetype truetype-fonts type1-fonts usb userlocales
xml2 xpm xrandr xv zlib"

Fixed in CVS. No version bump.
emerge sync in about an hour and try again.