When /etc/make.conf has FEATURES=strict, installing gnome-base/nautilus fails because the Manifest file is missing the entry for files/digest-nautilus-2.8.2. For the time being, I've disabled FEATURES=strict. Reproducible: Always Steps to Reproduce: 1. emerge gnome-base/nautilus Actual Results: >>> emerge (2 of 15) gnome-base/nautilus-2.8.2-r1 to / !!! Security Violation: A file exists that is not in the manifest. !!! File: files/digest-nautilus-2.8.2 Expected Results: gnome-base/nautilus should have been installed. Portage 2.0.51-r3 (default-linux/x86/2004.3, gcc-3.3.4, glibc-2.3.4.20040808-r1, 2.6.9 i686) ================================================================= System uname: 2.6.9 i686 AMD Athlon(tm) XP 2000+ Gentoo Base System version 1.4.16 distcc 2.16 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [enabled] Autoconf: sys-devel/autoconf-2.59-r5 Automake: sys-devel/automake-1.8.5-r1 Binutils: sys-devel/binutils-2.15.90.0.1.1-r3 Headers: sys-kernel/linux-headers-2.4.21-r1,sys-kernel/linux-headers-2.4.19-r1 Libtools: sys-devel/libtool-1.5.2-r7 ACCEPT_KEYWORDS="x86" AUTOCLEAN="yes" CFLAGS="-mcpu=athlon-xp -O2 -pipe" CHOST="i686-pc-linux-gnu" COMPILER="" CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3/share/config /usr/lib/mozilla/defaults/pref /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-mcpu=athlon-xp -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoaddcvs autoconfig ccache distcc distlocks sandbox sfperms strict userpriv" GENTOO_MIRRORS="http://open-systems.ufl.edu/mirrors/gentoo ftp://ftp.ussg.iu.edu/pub/linux/gentoo http://gentoo.oregonstate.edu" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://dwc.homedns.org/gentoo-portage" USE="3dnow X aalib acpi alsa apm avi berkdb bitmap-fonts cdr crypt cups divx4linux dvd encode f77 fam fbcon foomaticdb fortran gdbm gif gnome gnutls gpm gstreamer gtk gtk2 gtkhtml guile imagemagick imlib java jpeg junit kde libg++ libwww mad maildir mikmod mmx motif mozilla mpeg ncurses nls oggvorbis opengl oss pam pda pdflib perl png python qt quicktime readline samba sdl slang spell ssl svga tcpd tiff truetype unicode x86 xml xml2 xmms xv xvid zlib"
fixed in cvs, thanks for the report