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Bug 598597 - sci-libs/gdal-2.0.2 - /usr/include/sys/types.h:150:27: error: duplicate ‘unsigned’
Summary: sci-libs/gdal-2.0.2 - /usr/include/sys/types.h:150:27: error: duplicate ‘unsi...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Sci-geo Project
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-10-30 21:39 UTC by Juergen Rose
Modified: 2016-11-07 13:58 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,492.35 KB, text/x-log)
2016-10-30 21:39 UTC, Juergen Rose
Details
accomodate_recent_jasper.patch (accomodate_recent_jasper.patch,501 bytes, patch)
2016-11-01 06:56 UTC, Greg Turner
Details | Diff

Note You need to log in before you can comment on or make changes to this bug.
Description Juergen Rose 2016-10-30 21:39:36 UTC
Created attachment 451945 [details]
build.log

'MAKEOPTS=-j1 emerge -v1 gdal' fails with:
...
make[2]: Entering directory '/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/frmts/jpeg2000'
x86_64-pc-linux-gnu-g++ -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/gcore -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/alg -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/ogr -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/ogr/ogrsf_frmts -march=native -O2 -pipe -fPIC  -Wall   -DOGR_ENABLED -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port -I/usr/include -I/usr/ -I/usr//include  -DGDAL_COMPILATION -c -o ../o/jpeg2000dataset.o jpeg2000dataset.cpp
x86_64-pc-linux-gnu-g++ -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/gcore -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/alg -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/ogr -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/ogr/ogrsf_frmts -march=native -O2 -pipe -fPIC  -Wall   -DOGR_ENABLED -I/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port -I/usr/include -I/usr/ -I/usr//include  -DGDAL_COMPILATION -c -o ../o/jpeg2000_vsil_io.o jpeg2000_vsil_io.cpp
In file included from /var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_port.h:81:0,
                 from /var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_vsi.h:35,
                 from jpeg2000_vsil_io.cpp:78:
/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_config.h:215:0: warning: "PACKAGE_NAME" redefined
 #define PACKAGE_NAME ""
 ^
In file included from /usr/include/jasper/jasper.h:65:0,
                 from jpeg2000_vsil_io.h:33,
                 from jpeg2000_vsil_io.cpp:77:
/usr/include/jasper/jas_config.h:123:0: note: this is the location of the previous definition
 #define PACKAGE_NAME "jasper"
 ^
In file included from /var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_port.h:81:0,
                 from /var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_vsi.h:35,
                 from jpeg2000_vsil_io.cpp:78:
/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_config.h:218:0: warning: "PACKAGE_STRING" redefined
 #define PACKAGE_STRING ""
 ^
In file included from /usr/include/jasper/jasper.h:65:0,
                 from jpeg2000_vsil_io.h:33,
                 from jpeg2000_vsil_io.cpp:77:
/usr/include/jasper/jas_config.h:126:0: note: this is the location of the previous definition
 #define PACKAGE_STRING "jasper 1.900.18"
 ^
In file included from /var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_port.h:81:0,
                 from /var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_vsi.h:35,
                 from jpeg2000_vsil_io.cpp:78:
/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_config.h:221:0: warning: "PACKAGE_TARNAME" redefined
 #define PACKAGE_TARNAME ""
 ^
In file included from /usr/include/jasper/jasper.h:65:0,
                 from jpeg2000_vsil_io.h:33,
                 from jpeg2000_vsil_io.cpp:77:
/usr/include/jasper/jas_config.h:129:0: note: this is the location of the previous definition
 #define PACKAGE_TARNAME "jasper"
 ^
In file included from /var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_port.h:81:0,
                 from /var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_vsi.h:35,
                 from jpeg2000_vsil_io.cpp:78:
/var/tmp/portage/sci-libs/gdal-2.0.2/work/gdal-2.0.2/port/cpl_config.h:227:0: warning: "PACKAGE_VERSION" redefined
 #define PACKAGE_VERSION ""
 ^
In file included from /usr/include/jasper/jasper.h:65:0,
                 from jpeg2000_vsil_io.h:33,
                 from jpeg2000_vsil_io.cpp:77:
/usr/include/jasper/jas_config.h:135:0: note: this is the location of the previous definition
 #define PACKAGE_VERSION "1.900.18"
 ^
/usr/include/sys/types.h:150:27: error: duplicate ‘unsigned’
 typedef unsigned long int ulong;
                           ^
/usr/include/sys/types.h:150:27: error: declaration does not declare anything [-fpermissive]
 typedef unsigned long int ulong;
                           ^
/usr/include/sys/types.h:151:28: error: duplicate ‘unsigned’
 typedef unsigned short int ushort;
                            ^
/usr/include/sys/types.h:151:28: error: duplicate ‘short’
 typedef unsigned short int ushort;
                            ^
/usr/include/sys/types.h:151:28: error: declaration does not declare anything [-fpermissive]
/usr/include/sys/types.h:152:22: error: duplicate ‘unsigned’
 typedef unsigned int uint;
                      ^
/usr/include/sys/types.h:152:22: error: multiple types in one declaration
 typedef unsigned int uint;
                      ^
/usr/include/sys/types.h:152:22: error: declaration does not declare anything [-fpermissive]
make[2]: *** [../../GDALmake.opt:580: ../o/jpeg2000_vsil_io.o] Error 1








root@condor:/usr/src(42)# emerge --info '=sci-libs/gdal-2.0.2::gentoo'
Portage 2.3.2 (python 2.7.12-final-0, default/linux/amd64/13.0/desktop, gcc-5.4.0, glibc-2.23-r2, 4.8.4-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.8.4-gentoo-x86_64-Intel-R-_Core-TM-2_CPU_6600_@_2.40GHz-with-gentoo-2.3
KiB Mem:     7068332 total,   2713328 free
KiB Swap:   25173848 total,  24634096 free
Timestamp of repository gentoo: Sun, 30 Oct 2016 20:00:01 +0000
sh bash 4.4-r1
ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.4-r1::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.0-r2::gentoo
dev-lang/python:          2.7.12-r100::sage-on-gentoo, 3.4.5::gentoo, 3.5.2::gentoo
dev-util/cmake:           3.6.2::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.22.2::gentoo
sys-apps/sandbox:         2.10-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.26.1::gentoo
sys-devel/gcc:            5.4.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r2::gentoo
Repositories:

gentoo
    location: /usr/portage_condor
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

local
    location: /usr/local/portage
    masters: gentoo
    priority: 0

g-cpan
    location: /var/lib/cpan
    masters: gentoo
    priority: 1

sage-on-gentoo
    location: /var/lib/layman/sage-on-gentoo
    masters: gentoo science
    priority: 50

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 50

sunrise
    location: /var/lib/layman/sunrise
    masters: gentoo
    priority: 50

x11
    location: /var/lib/layman/x11
    masters: gentoo
    priority: 50

Installed sets: @system
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp.fi.muni.cz/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo rsync://gd.tuwien.ac.at/opsys/linux/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo http://gentoo.oregonstate.edu"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages/"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="64bit R X Xaw3d a52 aac accessibility acl acpi admin afs alsa amd64 amr ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile aufs automap automount barcode bash-completion berkdb blas blast bluetooth bluray boost branding btrfs bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cilk cli cmake collada consolekit contrib cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia digitalradio djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples excel exif expat extensions extra extras faac faad fam fbcon fbcondecor ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx ftp fuse gcj gd gdal gdbm gedit geoip geolocation geos gfortran gif gimp git glade glamor glib glpk gml gmp gnome gnome-keyring gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jadetex java jbig jit john jpeg jpeg2k kate kde kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate lirc live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg opencl opencv openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm pstricks pulseaudio python q16 q32 qemu qhull qml qt3support qt4 qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool rtlsdr sage samba sasl schroedinger science sdk sdl seccomp secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tbb tcl tcpd tex tex4ht theora thesaurus threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb utempter v4l v4l2 vaapi vala valgrind vdpau video vim-syntax virt-network virtualbox visio vorbis vpx vtk wav wayland webdav webdav-serf webkit wmf wxwidgets x264 xa xattr xcb xetex xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zsh-completion zvbi" ABI_X86="64" ALSA_CARDS="intel8x0" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog sensors thermal" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 ssse3" CURL_SSL="nss" DVB_CARDS="tda10045 tda10046lifeview" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="de en fr ru" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd SureElec" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="radeon radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

sci-libs/gdal-2.0.2::gentoo was built with the following:
USE="armadillo aux_xml curl fits geos gif gml hdf5 java jpeg jpeg2k mysql netcdf odbc ogdi opencl pdf perl png postgres python sqlite threads -debug -doc -mdb -spatialite -xls" ABI_X86="64" PYTHON_TARGETS="python2_7 python3_4 -python3_3"


root@condor:/usr/src(43)# emerge -pqv '=sci-libs/gdal-2.0.2::gentoo'

[ebuild   R   ] sci-libs/gdal-2.0.2  USE="armadillo aux_xml curl fits geos gif gml hdf5 java jpeg jpeg2k mysql netcdf odbc ogdi opencl pdf perl png postgres python sqlite threads -debug -doc -mdb -spatialite -xls" PYTHON_TARGETS="python2_7 python3_4 (-python3_3%)"
Comment 1 Felix Janda 2016-10-31 01:18:00 UTC
The public jasper headers seem to like breaking libc headers...

jasper/jas_types.h has the following:


/* Hopefully, these macro definitions will fix more problems than they cause. */
#if !defined(uchar)
#define uchar unsigned char
#endif
#if !defined(ushort)
#define ushort unsigned short
#endif
#if !defined(uint)
#define uint unsigned int
#endif
#if !defined(ulong)
#define ulong unsigned long
#endif
#if !defined(longlong)
#define longlong long long
#endif
#if !defined(ulonglong)
#define ulonglong unsigned long long
#endif


This breaks when libc headers try to define "ulong" with a typedef:


typedef unsigned long ulong


Before commit

https://github.com/mdadams/jasper/commit/5971949c0c88281c7e5044c367a9d03597fca3fd

everything still worked fine, because jas_types.h included
<sys/types.h> (with the typedef for ulong) before the macro hackery.
Even in that case jasper overrided the libc definition of ulong because
#ifdef can only check for preprocessor definitions, and not for
typedefs.


jasper should really be using typedefs instead of macros.
Comment 2 Greg Turner 2016-11-01 06:56:28 UTC
Created attachment 452063 [details, diff]
accomodate_recent_jasper.patch

Dirty compile-time workaround based on Felix Janda's comment.
Comment 3 Ivo Steinmann 2016-11-03 22:16:07 UTC
I get the same error here when compiling gdal. But for a workaround it is possible to disable jpeg2k support with USE=-jpeg2k. Then the package compiles. Of course this is only a intermediate solution.
Comment 4 Thomas Capricelli 2016-11-06 11:39:04 UTC
Hit by this too.
Comment 5 Amy Liffey gentoo-dev 2016-11-07 13:57:34 UTC
committer	Amy Winston <amynka@gentoo.org>	2016-11-07 13:55:55 (GMT)
commit	33c636fd5f8adad1a38696dcc01252b29a77c616 

sci-libs/gdal: fix jasper bug #598597

Should be fixed now.

Thank you !