tempfile.c:(.text+0x77): warning: the use of `tempnam' is dangerous, better use `mkstemp' build/debug/fitz/load-jpx.o: In function `fz_load_jpx': load-jpx.c:(.text+0x121): undefined reference to `opj_set_default_decoder_parameters' $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-gnome-libressl-unstable_20160921-191333) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- USE flags ... ... in make.conf: USE=" -openssl -gnutls libressl pax_kernel xtpax -cdinstall -oci8 -bindist btrfs -cddb -cgi compat declarative designer ecc ext4 extra extraengine -fortran freetds gcj gnuplot gtk2 -hdf5 icu -imap imlib inifile kvm libkms mbox mikmod mng mp3 mp4 mysqli ncurses nls nscd nss odbc -offensive ogg opus pam -plasma -policykit qml qt3support sddm server smartcard sourceview sql sqlite ssh system-cairo system-jpeg system-libevent system-libs system-libvpx tcl theora timidity tracepath ufed v4l v4l2 webstart -x264 xa -xcb xscreensaver xvmc ziffy" ... in /etc/portage/package.use/*: mail-mta/ssmtp ssl mta net-misc/wget ssl app-crypt/pinentry -qt4 app-editors/emacs -dbus -svg -ssl -gtk -gtk3 app-text/xmlto -latex dev-libs/boehm-gc threads dev-libs/libpcre pcre16 dev-lang/python threads dev-qt/qtgui egl eglfs net-nds/openldap -sasl dev-util/cmake -qt4 -qt5 dev-vcs/git -perl media-libs/mesa -vaapi sys-apps/kmod tools <=net-misc/openssh-7.3_p1-r2 -hpn net-misc/iputils -caps -filecaps entries in /etc/portage/package.unmask/*: sys-devel/gcc:6.2.0 ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-4.9.3 [2] x86_64-pc-linux-gnu-6.2.0 * llvm-config --version: 3.8.1 Available Python interpreters, in order of preference: [1] python2.7 [2] python3.4 [3] python3.5 (fallback) ----------------------------------------------------------------- Portage 2.3.1 (python 2.7.12-final-0, default/linux/amd64/13.0/desktop/gnome, gcc-6.2.0, glibc-2.23-r2, 4.7.4-hardened-r1 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.7.4-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3 KiB Mem: 65285480 total, 3311256 free KiB Swap: 67108860 total, 67101200 free Timestamp of repository gentoo: Wed, 28 Sep 2016 03:09:11 +0000 sh bash 4.3_p46-r1 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.3_p46-r1::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo, 3.5.2::gentoo dev-util/cmake: 3.6.2::gentoo sys-apps/baselayout: 2.3::gentoo sys-apps/openrc: 0.22::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.25.1-r1::gentoo, 2.26.1::gentoo sys-devel/gcc: 4.9.3::gentoo, 6.2.0-r1::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 local location: /usr/local/portage masters: gentoo priority: 2 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/entropy /etc/omega.conf /usr/share/config /var/lib/i2pd/certificates /var/rancid/.cloginrc /var/yp/Makefile" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-Werror=terminate -march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding btrfs bzip2 cairo cdda cdr cli colord compat consolekit cracklib crypt cups cxx dbus declarative designer dri dts dvd dvdr ecc eds emboss encode evo exif ext4 extra extraengine fam firefox flac freetds gcj gdbm gif glamor gnome gnome-keyring gnome-online-accounts gnuplot gpm gstreamer gtk gtk2 iconv icu imlib inifile introspection ipv6 jpeg kvm lcms ldap libkms libnotify libressl libsecret mad mbox mikmod mmx mmxext mng modules mp3 mp4 mpeg multilib mysqli nautilus ncurses nls nptl nscd nss odbc ogg opengl openmp opus pam pango pax_kernel pcre pdf png ppds pulseaudio qml qt3support qt4 readline sddm sdl seccomp server session smartcard sourceview spell sql sqlite sse sse2 ssh ssl startup-notification svg system-cairo system-jpeg system-libevent system-libs system-libvpx tcl tcpd theora tiff timidity tracepath tracker truetype udev udisks ufed unicode upower usb v4l v4l2 vorbis webstart wxwidgets xa xattr xml xscreensaver xtpax xv xvid xvmc ziffy zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="libressl" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="ach bo en-US lb pl" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Created attachment 448288 [details] app-text:mupdf-1.9a:20160928-051514.log
Created attachment 448290 [details] emerge-history.txt
Created attachment 448292 [details] environment
Try a downgrade to openjpeg-2.0.0. All versions between and including 2.1.0 and 2.1.2 seem to break mupdf due to unresolved symbols. Tested here with mupdf-1.8.0. FYI: This issue does not depend on LTO being on or off.
*** Bug 595418 has been marked as a duplicate of this bug. ***
@xmw: Apparently ( just from an irc conversation ) appears that upstream is able to compile 1.9a with the latest openjpeg. Is something on our side that causes the issue? Without the openjpeg.patch in mupdf I got another error (FYI).
Same problem here, downgrade to stable version app-text/mupdf-1.5-r1 fails with the same error, version 9999 has a failing patch...
It is likely related to binutils 2.16.x, sadly it is impossible to cross validate as libraries are not compatible and complain about incorrect relocations and the like.
it's rather not related to binutils. The patch for openjpeg2 is incorrect. Attached patch that does fixing build failure. line 59 on mupdf-1.9a have to be modified to use newer patch.
Created attachment 450200 [details, diff] mupdf-1.9a-openjpeg2.patch
To explain the problem, the new openjpeg is now using gcc 5's visibility attribute to hide symbols when needed. The openjpeg header file uses visibility('hidden') when building as a static lib and visibility('default') when building as a shared library. mupdf explicitly defines OPJ_STATIC before including the openjpeg header file, causing the visibility of the openjpeg symbols to be set to hidden. My guess is that the embedded openjpeg is built as a static library. This would probably explain why upstream is not running into this issue, while Gentoo is.
yes the patch in comment 10 fixes the issue as provided the old patch is not applied
Bug 595612 might be duplicate of this bug
*** Bug 595612 has been marked as a duplicate of this bug. ***
Patch works on amd64. Worthy of a -r1.
*** Bug 598458 has been marked as a duplicate of this bug. ***
[master 998c077] app-text/mupdf: Fix openjpeg-2.1 patch (#595406 by Oleg) 1 file changed, 45 insertions(+), 5 deletions(-)
*** Bug 598531 has been marked as a duplicate of this bug. ***
