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Bug 578282 - sci-geosciences/googleearth-7.1.4.1529: Emerge fails during patchelf due to missing file permissions
Summary: sci-geosciences/googleearth-7.1.4.1529: Emerge fails during patchelf due to m...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Marc Schiffbauer
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-03-26 11:00 UTC by Klaus Kusche
Modified: 2016-03-27 15:13 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
Build log (sci-geosciences:googleearth-7.1.4.1529:20160326-161457.log,2.24 KB, text/plain)
2016-03-26 16:28 UTC, Bob Johnson
Details

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Description Klaus Kusche 2016-03-26 11:00:12 UTC
Emerging googleearth fails:

 * running patchelf
warning: working around a Linux kernel bug by creating a hole of 2097152 bytes in â<80><98>libQtCore.so.4â<80><99>
open: Permission denied
 * ERROR: sci-geosciences/googleearth-7.1.4.1529::gentoo failed (prepare phase):
 *   patchelf failed on plugins/imageformats/libqgif.so

It turns out that libqgif.so and libqjpeg.so have no write permissions
for owner (portage), so patchelf cannot modify them.

Doing

chmod u+w work/opt/google/earth/free/plugins/imageformats/libqgif.so work/opt/google/earth/free/plugins/imageformats/libqjpeg.so

in the build directory and then restarting the emerge fixed the problem for me.
Comment 1 Gordon Pritchard 2016-03-26 13:45:19 UTC
I can confirm this bug also.

<code>
>>> Emerging (1 of 1) sci-geosciences/googleearth-7.1.4.1529::gentoo
>>> Downloading 'https://dl.google.com/dl/earth/client/current/google-earth-stable_current_amd64.deb'
--2016-03-26 06:32:47--  https://dl.google.com/dl/earth/client/current/google-earth-stable_current_amd64.deb
Resolving dl.google.com... 199.212.24.21, 199.212.24.23, 199.212.24.19, ...
Connecting to dl.google.com|199.212.24.21|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 46385468 (44M) [application/x-debian-package]
Saving to: ‘/usr/portage/distfiles/GoogleEarthLinux-7.1.4.1529_amd64.deb’

/usr/portage/distfi 100%[=====================>]  44.24M  14.9MB/s   in 3.0s   

2016-03-26 06:32:50 (14.9 MB/s) - ‘/usr/portage/distfiles/GoogleEarthLinux-7.1.4.1529_amd64.deb’ saved [46385468/46385468]

 * GoogleEarthLinux-7.1.4.1529_amd64.deb SHA256 SHA512 WHIRLPOOL size ;-) ...                                                        [ ok ]
>>> Unpacking source...
>>> Unpacking GoogleEarthLinux-7.1.4.1529_amd64.deb to /var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/work
>>> Unpacking data.tar.lzma to /var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/work
>>> Source unpacked in /var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/work
>>> Preparing source in /var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/work/opt/google/earth/free ...
 * running patchelf
warning: working around a Linux kernel bug by creating a hole of 2097152 bytes in ‘libQtCore.so.4’
open: Permission denied
 * ERROR: sci-geosciences/googleearth-7.1.4.1529::gentoo failed (prepare phase):
 *   patchelf failed on plugins/imageformats/libqgif.so
 * 
 * Call stack:
 *     ebuild.sh, line 133:  Called src_prepare
 *   environment, line 2498:  Called die
 * The specific snippet of code:
 *           patchelf --set-rpath '$ORIGIN/../..' "${x}" || die "patchelf failed on ${x}";
 * 
 * If you need support, post the output of `emerge --info '=sci-geosciences/googleearth-7.1.4.1529::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-geosciences/googleearth-7.1.4.1529::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/work/opt/google/earth/free'
 * S: '/var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/work/opt/google/earth/free'
</code>

Thank-you,
Comment 2 Tomáš Mózes 2016-03-26 14:22:36 UTC
Please provide the full build log and the output of emerge --info.
Comment 3 Bob Johnson 2016-03-26 16:28:01 UTC
Created attachment 429044 [details]
Build log
Comment 4 Bob Johnson 2016-03-26 16:29:13 UTC
Same here.

# emerge -uDpv @world

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U #] sci-geosciences/googleearth-7.1.4.1529::gentoo [7.1.2.2041::gentoo] USE="bundled-libs" 0 KiB

Total: 1 package (1 upgrade), Size of downloads: 0 KiB

# emerge --info
Portage 2.2.26 (python 2.7.10-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.21-r2, 4.1.15-gentoo-r1 x86_64)
=================================================================
System uname: Linux-4.1.15-gentoo-r1-x86_64-Intel-R-_Core-TM-_i5-3570_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    32936728 total,  10506952 free
KiB Swap:    4194300 total,   4194300 free
Timestamp of repository gentoo: Sat, 26 Mar 2016 15:45:01 +0000
sh bash 4.3_p42-r1
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p42-r1::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.4.3-r1::gentoo
dev-util/cmake:           3.3.1-r1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.19.1::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.21-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.namerica.gentoo.org/gentoo-portage
    priority: -1000

printer-drivers
    location: /var/lib/layman/printer-drivers
    masters: gentoo
    priority: 0

vmware
    location: /var/lib/layman/vmware
    masters: gentoo
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA vmware"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-march=native -O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X acl alsa amd64 apache2 berkdb bzip2 cairo cli clucene colord consolekit cracklib crypt cups curl cxx dbus doc dri examples exif fontconfig fortran gcj gd gdbm gif handbook iconv icu ipv6 jack java jbig jpeg jpeg2k kde kipi kpathsea lcms lzma mbox mmx mmxext mng modules multilib ncurses nls nptl odbc ogg openexr opengl openmp pam pango pcre pdf plasma png policykit postgres qt3support readline seccomp semantic-desktop session source spell sse sse2 ssl svg t1lib tcpd threads tiff truetype unicode vim-syntax webp xattr xinerama xml xpm zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_core authn_dbd authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers http2 ident imagemap include info lbmethod_byrequests log_config log_forensic logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="keyboard mouse evdev vmmouse wacom joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver presenter-minimizer wiki-publisher" LINGUAS="en_US" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" SANE_BACKENDS="epson2" USERLAND="GNU" VIDEO_CARDS="fbdev intel radeon vesa vmware" XFCE_PLUGINS="clock trash" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON


Build log attached.
Comment 5 Gerard van Vuuren 2016-03-26 18:26:49 UTC
Same "patchelf" problem here.
Gerard.
Comment 6 Ulenrich 2016-03-27 00:57:23 UTC
Same problem here with using dev-util/patchelf-0.9
But with stable dev-util/patchelf-0.8
works for me !!!
Maybe not really a permission problem here ...
Comment 7 Juergen Rose 2016-03-27 09:06:33 UTC
I have the same problem. If I downgrade to patchelf-0.8, the patchelf issue disappears, but emerge now fails with checksum or file size error:

>>> Emerging (1 of 1) sci-geosciences/googleearth-7.1.4.1529::gentoo
>>> Downloading 'https://dl.google.com/dl/earth/client/current/google-earth-stable_current_amd64.deb'
--2016-03-27 10:58:50--  https://dl.google.com/dl/earth/client/current/google-earth-stable_current_amd64.deb
Resolving dl.google.com (dl.google.com)... 172.217.18.14, 2a00:1450:4001:808::200e
Connecting to dl.google.com (dl.google.com)|172.217.18.14|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 46385468 (44M) [application/x-debian-package]
Saving to: ‘/net/caiman/usr/local/portage/distfiles_caiman/GoogleEarthLinux-7.1.4.1529_amd64.deb’

/net/caiman/usr/loc 100%[===================>]  44.24M   225KB/s    in 4m 31s  

utime(/net/caiman/usr/local/portage/distfiles_caiman/GoogleEarthLinux-7.1.4.1529_amd64.deb): No such file or directory
2016-03-27 11:03:22 (167 KB/s) - ‘/net/caiman/usr/local/portage/distfiles_caiman/GoogleEarthLinux-7.1.4.1529_amd64.deb’ saved [46385468/46385468]

!!! Couldn't download 'GoogleEarthLinux-7.1.4.1529_amd64.deb'. Aborting.
 * Fetch failed for 'sci-geosciences/googleearth-7.1.4.1529', Log file:
 *  '/var/tmp/portage/sci-geosciences/googleearth-7.1.4.1529/temp/build.log'
 * Wrong checksum or file size means that Google silently replaced the distfile with a newer version.
 * Note that Gentoo cannot mirror the distfiles due to license reasons, so we have to follow the bump.
 * Please file a version bump bug on https://bugs.gentoo.org (search existing bugs for googleearth first!).
 * By redigesting the file yourself, you will install a different version than the ebuild says, untested!

>>> Failed to emerge sci-geosciences/googleearth-7.1.4.1529, Log file:
Comment 8 Marc Schiffbauer gentoo-dev 2016-03-27 13:21:51 UTC
Thanks for reporting. I still had patchelf 0.8 here and I can confirm it does not work with patchelf 0.9.

I change dthe ebuild so that it requires patchelf 0.8 for now until someone comes up with a better solution.

@Juergen: chksum prob must be something on your side... I double checked it and redownloaded GE and recreated checksums here to be sure.

Happy easter.
Comment 9 Klaus Kusche 2016-03-27 13:56:48 UTC
(In reply to Marc Schiffbauer from comment #8)
> Thanks for reporting. I still had patchelf 0.8 here and I can confirm it
> does not work with patchelf 0.9.
> 
> I change dthe ebuild so that it requires patchelf 0.8 for now until someone
> comes up with a better solution.

The solution was in my original bug report:
After unpacking the files, before starting patchelf,
just chmod the permissions of libqgif.so and libqjpeg.so,
and patchelf 0.9 will happily patch them.
Comment 10 Marc Schiffbauer gentoo-dev 2016-03-27 14:33:33 UTC
Sorry Klaus, I missed your solution. Now fixed by using fperms to correct file permissions. And thanks again for reporting.
Comment 11 Gerard van Vuuren 2016-03-27 15:13:41 UTC
Compiles ok now.
Emerge downgraded patchelf to 0.8.
Thanks,
Gerard.