====================================================================== FAIL: test_arpack.test_symmetric_modes(True, <gen-symmetric>, 'd', 2, 'SA', None, 0.5, <function asarray at 0x7f78c986bc20>, None, 'buckling') ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python3.3/site-packages/nose/case.py", line 198, in runTest self.test(*self.arg) File "/var/tmp/portage/sci-libs/scipy-0.12.0/work/scipy-0.12.0-python3_3/build/test/lib/scipy/sparse/linalg/eigen/arpack/tests/test_arpack.py", line 259, in eval_evec assert_allclose(LHS, RHS, rtol=rtol, atol=atol, err_msg=err) File "/usr/lib64/python3.3/site-packages/numpy/testing/utils.py", line 1179, in assert_allclose verbose=verbose, header=header) File "/usr/lib64/python3.3/site-packages/numpy/testing/utils.py", line 645, in assert_array_compare raise AssertionError(msg) AssertionError: Not equal to tolerance rtol=4.44089e-13, atol=4.44089e-13 error for eigsh:general, typ=d, which=SA, sigma=0.5, mattype=asarray, OPpart=None, mode=buckling (mismatch 100.0%) x: array([[ 15.86892331, 0.0549568 ], [ 14.15864153, 0.31381369], [ 10.99691307, 0.37543458],... y: array([[ 3.19549052, 0.0549568 ], [ 2.79856421, 0.31381369], [ 1.67526354, 0.37543458],... ====================================================================== FAIL: test_arpack.test_symmetric_modes(True, <gen-symmetric>, 'd', 2, 'SA', None, 0.5, <function asarray at 0x7f78c986bc20>, None, 'cayley') ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python3.3/site-packages/nose/case.py", line 198, in runTest self.test(*self.arg) File "/var/tmp/portage/sci-libs/scipy-0.12.0/work/scipy-0.12.0-python3_3/build/test/lib/scipy/sparse/linalg/eigen/arpack/tests/test_arpack.py", line 259, in eval_evec assert_allclose(LHS, RHS, rtol=rtol, atol=atol, err_msg=err) File "/usr/lib64/python3.3/site-packages/numpy/testing/utils.py", line 1179, in assert_allclose verbose=verbose, header=header) File "/usr/lib64/python3.3/site-packages/numpy/testing/utils.py", line 645, in assert_array_compare raise AssertionError(msg) AssertionError: Not equal to tolerance rtol=4.44089e-13, atol=4.44089e-13 error for eigsh:general, typ=d, which=SA, sigma=0.5, mattype=asarray, OPpart=None, mode=cayley (mismatch 100.0%) x: array([[-0.36892684, -0.01935691], [-0.26850996, -0.11053158], [-0.40976156, -0.13223572],... y: array([[-0.43633077, -0.01935691], [-0.25161386, -0.11053158], [-0.36756684, -0.13223572],... ---------------------------------------------------------------------- Ran 6000 tests in 72.601s FAILED (KNOWNFAIL=16, SKIP=39, failures=63) Running unit tests for scipy NumPy version 1.7.1 NumPy is installed in /usr/lib64/python3.3/site-packages/numpy SciPy version 0.12.0 SciPy is installed in /var/tmp/portage/sci-libs/scipy-0.12.0/work/scipy-0.12.0-python3_3/build/test/lib/scipy Python version 3.3.2 (default, Jul 23 2013, 14:01:20) [GCC 4.8.1] nose version 1.3.0 * ERROR: sci-libs/scipy-0.12.0::gentoo failed (test phase): * Tests fail with python3.3 Portage 2.2.0 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.1, glibc-2.17, 3.10.6-gentoo x86_64) ================================================================= System uname: Linux-3.10.6-gentoo-x86_64-AMD_Phenom-tm-_II_X4_965_Processor-with-gentoo-2.2 KiB Mem: 7920972 total, 3396328 free KiB Swap: 25165812 total, 25165812 free Timestamp of tree: Unknown ld GNU ld (GNU Binutils) 2.23.2 app-shells/bash: 4.2_p45 dev-lang/python: 2.7.5-r1, 3.3.2-r1 dev-util/cmake: 2.8.11.1 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.13.4, 1.14 sys-devel/binutils: 2.23.2 sys-devel/gcc: 4.8.1 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.9 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms split-elog strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus declarative dri dts dvd dvdr egl emboss encode exif fam firefox flac fortran gdbm gif gpm gtk iconv ipv6 jpeg kde kipi lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl ogg opengl openmp openvg pam pango pcre pdf phonon plasma png policykit ppds qt3support qt4 readline sdl semantic-desktop session spell sqlite sse sse2 ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 xa xcb xcomposite xinerama xml xscreensaver xv xvfb xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19" USERLAND="GNU" VIDEO_CARDS="vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
I can reproduce test failures using reference implementations from sci overlay. Which lapack are you using? atlas is fine.
I see the same 63 test_arpack* failures in sci-libs/scipy-0.12.1 on ~amd64 with python2.7, 3.2 and 3.3. eroen@falcon ~ $ eselect blas list Installed BLAS for library directory lib64 [1] reference * eroen@falcon ~ $ eselect cblas list Installed CBLAS for library directory lib64 [1] gsl * eroen@falcon ~ $ eselect lapack list Installed LAPACK for library directory lib64 [1] reference * eroen@falcon ~ $ emerge -pOv sci-libs/blas-reference sci-libs/gsl sci-libs/lapack-reference These are the packages that would be merged, in order: [ebuild R ] sci-libs/blas-reference-20070226-r2 USE="-doc" 0 kB [ebuild R ] sci-libs/gsl-1.15 USE="-cblas-external -static-libs" 0 kB [ebuild R ] sci-libs/lapack-reference-3.2.1-r1 USE="-doc" 0 kB
Please see whether this is still valid for scipy 0.14/0.15.
