Bug 450716 – sci-chemistry/vmd-1.9.1-r1 - Assembler messages: Fatal error: can't create ../compile/lib_LINUX/tcl/autopsf1.3/psfcheck.o: No such file or directory

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description xela 2013-01-07 11:42:47 UTC]

I'm trying to emerge vmd like this:
# USE="tachyon povray msms" emerge vmd


And build fails with following python-related messages:

VMDTkinterMenu.C: In member function ‘virtual void VMDTkinterMenu::where(int&, int&)’:
VMDTkinterMenu.C:73:43: error: ‘PyString_AsString’ was not declared in this scope
make: *** [VMDTkinterMenu.o] Error 1
make: *** Waiting for unfinished jobs....
PythonTextInterp.C: In function ‘void initvmdcallbacks()’:
PythonTextInterp.C:119:70: error: ‘Py_InitModule’ was not declared in this scope
PythonTextInterp.C: In constructor ‘PythonTextInterp::PythonTextInterp(VMDApp*)’:
PythonTextInterp.C:144:50: error: cannot convert ‘char**’ to ‘wchar_t**’ for argument ‘2’ to ‘void PySys_SetArgv(int, wchar_t**)’
PythonTextInterp.C:149:64: error: ‘PyString_FromString’ was not declared in this scope
make: *** [PythonTextInterp.o] Error 1
py_animate.C: In function ‘PyObject* style(PyObject*, PyObject*)’:
py_animate.C:74:58: error: ‘PyString_FromString’ was not declared in this scope
py_animate.C: In function ‘PyObject* skip(PyObject*, PyObject*)’:
py_animate.C:183:42: error: ‘PyInt_FromLong’ was not declared in this scope
py_animate.C: In function ‘PyObject* is_active(PyObject*, PyObject*)’:
py_animate.C:199:36: error: ‘PyInt_FromLong’ was not declared in this scope
py_animate.C: In function ‘void initanimate()’:
py_animate.C:241:50: error: ‘Py_InitModule’ was not declared in this scope
make: *** [py_animate.o] Error 1



Reproducible: Always

Steps to Reproduce:
1. Try to emerge sci-chemistry/vmd
2. ???
3. FAIL
Actual Results:  
emerge failed

Expected Results:  
emerge succeed

$ emerge --info
Portage 2.1.11.38 (default/linux/amd64/10.0, gcc-4.6.3, glibc-2.16.0, 3.7.1-gentoo x86_64)
=================================================================
System uname: Linux-3.7.1-gentoo-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.2
Timestamp of tree: Sat, 05 Jan 2013 12:15:01 +0000
ld GNU ld (GNU Binutils) 2.23.1
app-shells/bash:          4.2_p39-r1
dev-java/java-config:     2.1.12-r1
dev-lang/python:          2.7.3-r3, 3.2.3-r2
dev-util/cmake:           2.8.10.2
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.6
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6
sys-devel/binutils:       2.23.1
sys-devel/gcc:            4.5.4, 4.6.3
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.7 (virtual/os-headers)
sys-libs/glibc:           2.16.0
Repositories: gentoo steam-overlay
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=corei7-avx -mtune=corei7-avx -mavx"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions"
CONFIG_PROTECT_MASK="${EPREFIX}/etc/gconf /etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=corei7-avx -mtune=corei7-avx -mavx"
DISTDIR="/usr/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync metadata-transfer news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.kiev.ua/ftp/ http://gentoo.iteam.net.ua/ http://portage.org.ua/"
LANG="uk_UA.UTF-8"
LC_ALL=""
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/steam-overlay"
SYNC="rsync://rsync.ua.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X aac acl alsa amd64 amr apng avx berkdb bluetooth bzip2 cairo cdda chardet cli consolekit cracklib crypt cue cups cxx dbus djvu dri dvd eps ffmpeg flac fortran gdbm gif gnutls gpm gudev h264 hwdb iconv icu ipv6 jpeg jpeg2k jpg lame lzma lzo mad matroska mikmod minizip mkv mmx mmxext mng mod modules mp3 mp3exif mp4 mudflap multilib ncurses nls nptl nsplugin ogg openal opencl opengl openmp openssl p7zip pam pcre pdf png policykit postscript pppd qt3support qt4 rar readline scrobbler sdl session silk smp speex sqlite sse sse2 sse3 sse4 sse4_1 sse4_2 ssl ssse3 svg tcpd tga theora tiff truetype udisks unicode usb utf8 v4l v4l2 vorbis webp x264 xml xvid xvmikmod xz zip zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="fglrx" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

[Comment 1 Jeroen Roovers (RETIRED) 2013-01-07 12:33:09 UTC]

Please attach the entire build log to this bug report.

[Comment 2 xela 2013-01-07 14:01:38 UTC]

Created attachment 334730 [details]
build log

[Comment 3 xela 2013-01-07 14:01:52 UTC]

here it is

[Comment 4 Jeroen Roovers (RETIRED) 2013-01-07 14:47:28 UTC]

Looks like a parallel make problem.

[Comment 5 xela 2013-01-07 15:04:07 UTC]

Created attachment 334734 [details]
build log without parallel make

[Comment 6 Justin Lecher (RETIRED) 2013-01-24 08:05:04 UTC]

+  24 Jan 2013; Justin Lecher <[e-mail]> vmd-1.9.1.ebuild,
+  vmd-1.9.1-r1.ebuild:
+  Force py2, #450716
+
+