Please mark stable, runtime test only: download http://pdb.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=3ZUA and open in pymol
ago@amd64box ~ $ LC_ALL="C" pymol downloads/3ZUA.pdb Detected OpenGL version 2.0 or greater. Shaders available. Detected GLSL version 1.20. HEADER HYDROLASE 18-JUL-11 3ZUA TITLE INITIAL RECOGNITION STEPS OF THE TYPE I SECRETION SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-HEMOLYSIN TRANSLOCATION ATP-BINDING PROTEIN HLYB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLD; COMPND 5 EC: 3.4.22.2; COMPND 6 ENGINEERED: YES ObjectMolecule: Read secondary structure assignments. ObjectMolecule: Read crystal symmetry information. Symmetry: Found 1 symmetry operators. ObjectMolReadPDBStr: read MODEL 1 ObjectMolReadPDBStr: read MODEL 2 ObjectMolReadPDBStr: read MODEL 3 ObjectMolReadPDBStr: read MODEL 4 ObjectMolReadPDBStr: read MODEL 5 ObjectMolReadPDBStr: read MODEL 6 ObjectMolReadPDBStr: read MODEL 7 ObjectMolReadPDBStr: read MODEL 8 ObjectMolReadPDBStr: read MODEL 9 ObjectMolReadPDBStr: read MODEL 10 CmdLoad: "downloads/3ZUA.pdb" loaded as "3ZUA". python2.7: nv50_pc.h:351: nv_alloc_instruction: Assertion `pc->num_instructions < 2048' failed. /usr/bin/pymol: line 2: 2521 Aborted python2.7 -O ${PYMOL_PATH}/__init__.py -q $* How about it?
never seen, but a quick google suggest it to be a mesa bug.
could you please try to do cat >> ~/.pymolrc <<- EOF set use_shaders, 0 set sphere_mode, 0 EOF and try again?
(In reply to comment #3) > could you please try to do > > cat >> ~/.pymolrc <<- EOF > set use_shaders, 0 > set sphere_mode, 0 > EOF > > and try again? works, can be stabilized?
give me night to sleep about aka. I will dig for the severity.
PLease go ahead. I will add a post inst notice.
amd64 stable
Stable ppc
x86 stable, closing