it simply fails to start with MOLMOL 2K.2 Version 2.1-2.6: Copyright (c) 1994-98 by Institut fuer Molekularbiologie und Biophysik, ETH Zurich Spectrospin AG, Faellanden, Switzerland Version 2K.2: Custom version by Reto Koradi, 1999-2003 using Motif/OpenGL Error: XtCreateWidget "ogl" requires non-NULL widget class @x11 could give any hint on what is going on here? x11-base/xorg-server-1.12.3 media-libs/mesa-8.1_rc1_pre20120724 x11-drivers/nvidia-drivers-302.17 sys-kernel/gentoo-sources-3.5.0 x11-libs/openmotif-2.3.3-r1 x11-libs/libGLw-8.0.0 $ einfo sci-chemistry/molmol Portage 2.2.0_alpha120 (default/linux/amd64/10.0, gcc-4.7.1-asneeded, glibc-2.15-r2, 3.5.0-lh-iommu x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.5.0-lh-iommu-x86_64-Intel-R-_Core-TM-_i7-2600_CPU_@_3.40GHz-with-gentoo-2.1 Timestamp of tree: Sun, 05 Aug 2012 08:30:01 +0000 distcc[7733] (dcc_set_trace_from_env) ERROR: failed to open logfile /var/log/distcc.log: Permission denied [disabled] ccache version 3.1.7 [enabled] app-shells/bash: 4.2_p37 dev-java/java-config: 2.1.12 dev-lang/python: 2.6.8, 2.7.3-r2, 3.1.5, 3.2.3-r1 dev-util/ccache: 3.1.7 dev-util/cmake: 2.8.8-r3 dev-util/pkgconfig: 0.27 sys-apps/baselayout: 2.1-r1 sys-apps/openrc: 0.10.5 sys-apps/sandbox: 2.6 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.6, 1.12.2 sys-devel/binutils: 2.22.90 sys-devel/gcc: 4.4.7, 4.5.4, 4.6.3, 4.7.0, 4.7.1 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r3 sys-kernel/linux-headers: 3.5 (virtual/os-headers) sys-libs/glibc: 2.15-r2 Repositories: gentoo sunrise bicatali betagarden dummy neurogeek science last-hope g-ctan ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-bmi2 -mno-tbm -mavx -mno-avx2 -msse4.2 -msse4.1 -mno-lzcnt --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/eselect/ /usr/share/gnupg/qualified.txt /usr/share/nano/ /usr/share/openvpn/easy-rsa /var/lib/hsqldb" CONFIG_PROTECT_MASK="${EPREFIX}/etc/gconf /etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-bmi2 -mno-tbm -mavx -mno-avx2 -msse4.2 -msse4.1 -mno-lzcnt --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare" DISTDIR="/mnt/sdd/distfiles" EMERGE_DEFAULT_OPTS="--jobs=4 --load-average=12 -t --keep-going --autounmask-write --autounmask --quiet-build=n" FCFLAGS="-O2 -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-bmi2 -mno-tbm -mavx -mno-avx2 -msse4.2 -msse4.1 -mno-lzcnt --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g" FEATURES="assume-digests binpkg-logs buildsyspkg ccache collision-protect distlocks ebuild-locks fixlafiles metadata-transfer multilib-strict news noinfo parallel-fetch parallel-install parse-eapi-ebuild-head preserve-libs protect-owned sandbox sfperms sign split-log splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-bmi2 -mno-tbm -mavx -mno-avx2 -msse4.2 -msse4.1 -mno-lzcnt --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g" GENTOO_MIRRORS=" /mnt/tmpfs/ http://gentoo.j-schmitz.net/mirror/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo/" LANG="en_GB.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common" LINGUAS="en" MAKEOPTS="-j16 -l12" PKGDIR="/usr/portage/packages" PORTAGE_COMPRESS="xz" PORTAGE_COMPRESS_FLAGS="-z -e -9 -v" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/local/overlays/sunrise-reviewed /local/overlays/bicatali /local/overlays/betagarden /local/overlays/dummy /local/overlays/neurogeek /local/overlays/sci /local/overlays/lh/ebuilds /local/overlays/g-ctan" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X acl alsa amd64 avx bash-completion berkdb branding bzip2 cairo caps cli cracklib crypt cups cxx dbus dri fortran gdbm gif gmp gnome gnome-keyring gpm gstreamer gtk iconv icu ipv6 jpeg jpeg2k mmx mmxext modules mudflap multilib ncurses network-cron nls nptl nsplugin numa opengl openmp pam pcre png pppd pulseaudio qt3support raw readline session smp sse sse2 sse3 sse4 sse4_1 sse4a ssl startup-notification tcpd threads tiff truetype unicode vaapi vdpau xinerama zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DRACUT_MODULES="plymouth" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en" PYTHON_TARGETS="pypy1_9 python3_1 python3_2 python2_6 python2_7" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby19" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USE_PYTHON="2.6 2.7 3.1 3.2 2.7-pypy-1.9" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= sci-chemistry/molmol-2k_p2-r2 was built with the following: USE="(multilib)"
+*molmol-2k_p2-r3 (05 Aug 2012) + + 05 Aug 2012; Justin Lecher <jlec@gentoo.org> molmol-2k_p2-r2.ebuild, + +molmol-2k_p2-r3.ebuild, +files/molmol-2k_p2-fink.patch: + Add patch from fink, enhances code style and fixes OGL bug, #429974 +
