42989 – Gromacs-3.1.4-r1 puts binaries in strange place.

Bug 42989 - Gromacs-3.1.4-r1 puts binaries in strange place.

Summary: Gromacs-3.1.4-r1 puts binaries in strange place.

Status:	RESOLVED FIXED

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	High normal (vote)
Assignee:	Gentoo Science Related Packages

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Keywords:

Depends on:
Blocks:

Reported:	2004-02-26 07:49 UTC by Jeremy Warren
Modified:	2004-02-28 17:35 UTC (History)
CC List:	0 users

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Package list:
Runtime testing required:	---

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Description Jeremy Warren 2004-02-26 07:49:48 UTC

Gromacs-3.1.4-r1, when emerged, places its binaries in:

/usr/i686-pc-linux-gnu/bin/

Should this not be:

/usr/bin?

Or, how about putting the binaries into /usr/gromacs and then either adding it to the path or symlinking them into /usr/bin?

Reproducible: Always
Steps to Reproduce:
1.  Emerge gromacs
2.  locate pdbgmx


Actual Results:  
root # locate pdb2gmx
/usr/i686-pc-linux-gnu/bin/pdb2gmx
/usr/share/doc/gromacs-3.1.4-r1/html/online/pdb2gmx.html
/usr/share/man/man1/pdb2gmx.1.gz


Expected Results:  
Emerged the files into a place readily locatable in the path.

Portage 2.0.50-r1 (default-x86-1.4, gcc-3.3.2, glibc-2.3.2-r9, 2.6.3-mm3)
=================================================================
System uname: 2.6.3-mm3 i686 Intel(R) Pentium(R) 4 CPU 2.40GHz
Gentoo Base System version 1.4.3.13
ccache version 2.3 [enabled]
Autoconf: sys-devel/autoconf-2.58-r1
Automake: sys-devel/automake-1.7.7
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CFLAGS="-O3 -march=pentium4 -falign-jumps=4 -falign-loops=4 -fomit-frame-pointer
-mmmx -msse -msse2 -mfpmath=sse -funroll-loops -pipe -w"
CHOST="i686-pc-linux-gnu"
COMPILER="gcc3"
CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config
/usr/kde/3.1/share/config /usr/kde/3.2/share/config /usr/kde/3/share/config
/usr/lib/mozilla/defaults/pref /usr/share/config /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/env.d"
CXXFLAGS="-O3 -march=pentium4 -falign-jumps=4 -falign-loops=4
-fomit-frame-pointer -mmmx -msse -msse2 -mfpmath=sse -funroll-loops -pipe -w"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs ccache sandbox"
GENTOO_MIRRORS="ftp://ftp.ussg.iu.edu/pub/linux/gentoo
ftp://csociety-ftp.ecn.purdue.edu/pub/gentoo/ ftp://gentoo.noved.org/
http://gentoo.noved.org/"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage"
USE="X aalib acpi alsa apm arts avi berkdb bonobo canna cjk crypt cups dga
directfb encode fbcon ffmpeg fftw foomaticdb freetype gdbm gif gnome gpm gtk
gtk2 hdf5 imap imlib java javascript jikes jpeg kde libg++ libwww mad mikmod mmx
motif mozilla mpeg mysql ncurses nls oggvorbis opengl oss pam pdflib perl php
pic png propolice python qt quicktime readline samba sasl sdl slang speedo spell
sse ssl svga tcpd tiff truetype wmf x86 xine xml2 xmms xv xvid zlib"

Comment 1 Donnie Berkholz (RETIRED) gentoo-dev

2004-02-28 17:35:47 UTC

Thanks. Fixed in 3.1.4-r2.