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Bug 399483 - sci-libs/cholmod-1.7.4 fails to build with sci-libs/parmetis-3.2.0
Summary: sci-libs/cholmod-1.7.4 fails to build with sci-libs/parmetis-3.2.0
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2012-01-20 09:53 UTC by Helmut Jarausch
Modified: 2012-03-13 11:27 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (build.log,150.33 KB, text/plain)
2012-01-20 09:54 UTC, Helmut Jarausch
Details
config.log (config.log,56.19 KB, application/octet-stream)
2012-01-22 18:22 UTC, Pavel
Details

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Description Helmut Jarausch 2012-01-20 09:53:10 UTC
sci-libs/cholmod-1.7.4 fails to build with sci-libs/parmetis-3.2.0 due to

/var/tmp/portage/sci-libs/cholmod-1.7.4/work/CHOLMOD/Partition/cholmod_metis.c:373:5: warning: passing argument 6 of 'METIS_NodeComputeSeparator' from incompatible pointer type
/usr/include/metis/proto.h:358:6: note: expected 'float *' but argument is of type 'int *'
/var/tmp/portage/sci-libs/cholmod-1.7.4/work/CHOLMOD/Partition/cholmod_metis.c:373:5: error: too few arguments to function 'METIS_NodeComputeSeparator'
/usr/include/metis/proto.h:358:6: note: declared here


Reproducible: Always




37 % emerge --info '=sci-libs/cholmod-1.7.4'
Portage 2.2.0_alpha84 (default/linux/amd64/10.0/desktop, gcc-4.5.3, glibc-2.14.1-r2, 3.2.1-gentoo x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.2.1-gentoo-x86_64-AMD_Phenom-tm-_II_X4_955_Processor-with-gentoo-2.1
Timestamp of tree: Fri, 20 Jan 2012 08:45:01 +0000
ccache version 3.1.7 [disabled]
app-shells/bash:          4.2_p20
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.2-r3, 3.2.2
dev-util/ccache:          3.1.7
dev-util/cmake:           2.8.6-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.1
sys-apps/openrc:          0.9.8.1
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.2-r1
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.5.3-r2, 4.6.2, 4.7.0_pre9999::local
sys-devel/gcc-config:     1.5-r2
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.2 (virtual/os-headers)
sys-libs/glibc:           2.14.1-r2
Repositories: gentoo local sunrise
Installed sets: 
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-mtune=native -O2 -msse3 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/lib/neatx/home"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-mtune=native -O2 -msse3 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs buildpkg distlocks ebuild-locks fixlafiles news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo "
LANG="en_US.iso88591"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en de"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage /usr/local/portage/layman/sunrise"
SYNC="rsync://rsync.informatik.RWTH-Aachen.de/gentoo-portage"
USE="3dnow 3dnowext 3dnowprefetch X a52 aac acl acpi alsa amd64 atm avahi berkdb branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam ffmpeg fftw firefox flac fortran fuse gdbm gdu gfortran gif gimp gnome gpm gtk gtk2 iconv ipv6 jpeg kde lapack lcms libnotify mad mmx mmxext mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf png policykit ppds pppd qt qt3support qt4 readline sdl session smp spell sqlite sqlite3 sse sse2 sse3 sse4a ssl startup-notification svg sysfs tcl tcpd threads tiff tk truetype udev unicode usb vorbis x264 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="ati radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Helmut Jarausch 2012-01-20 09:54:24 UTC
Created attachment 299371 [details]
build log
Comment 2 Pavel 2012-01-22 18:22:01 UTC
Created attachment 299561 [details]
config.log
Comment 3 Pavel 2012-01-22 18:25:32 UTC
Portage 2.2.0_alpha51 (default/linux/amd64/10.0, gcc-4.5.3, glibc-2.14.1-r2, 2.6.38-gentoo-r7 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-2.6.38-gentoo-r7-x86_64-Intel-R-_Core-TM-_i5_CPU_760_@_2.80GHz-with-gentoo-2.1
Timestamp of tree: Sun, 22 Jan 2012 12:30:01 +0000
app-shells/bash:          4.2_p20
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.2-r3, 3.2.2
dev-util/cmake:           2.8.6-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.1
sys-apps/openrc:          0.9.8.1
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.2-r1
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.4.6-r1, 4.5.3-r2
sys-devel/gcc-config:     1.5-r2
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.2 (virtual/os-headers)
sys-libs/glibc:           2.14.1-r2
Repositories:

gentoo
    location: /usr/portage
    sync: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

mozilla
    location: /var/lib/layman/mozilla
    masters: gentoo
    priority: 0

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 1

mexmat
    location: /var/lib/layman/mexmat
    masters: gentoo
    priority: 2

local
    location: /usr/local/portage
    masters: gentoo
    priority: 3

Installed sets:
ABI="amd64"
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
ACCEPT_PROPERTIES="*"
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol"
ANT_HOME="/usr/share/ant"
APACHE2_MODULES="alias auth_basic auth_digest authn_anon authn_default authn_file authz_default authz_groupfile authz_host authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif so speling status unique_id vhost_alias"
APACHE2_MPMS="worker"
ARCH="amd64"
AUTOCLEAN="yes"
BOOTSTRAP_USE="cxx unicode multilib"
CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump"
CAMERAS="ptp2"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O3 -march=nocona -pipe -fomit-frame-pointer -pipe"
CFLAGS_amd64="-m64"
CFLAGS_x32="-mx32"
CFLAGS_x86="-m32"
CHOST="x86_64-pc-linux-gnu"
CHOST_amd64="x86_64-pc-linux-gnu"
CHOST_x32="x86_64-pc-linux-gnu"
CHOST_x86="i686-pc-linux-gnu"
CLEAN_DELAY="5"
COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
COLLISION_IGNORE="/lib/modules"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/bind /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O3 -march=nocona -pipe -fomit-frame-pointer -pipe"
DEFAULT_ABI="amd64"
DISTDIR="/mnt/distfiles/"
EDITOR="/bin/nano"
ELIBC="glibc"
EMERGE_DEFAULT_OPTS="-v"
EMERGE_WARNING_DELAY="10"
EPREFIX=""
EROOT="/"
FCFLAGS=""
FEATURES="assume-digests binpkg-logs buildpkg distlocks ebuild-locks fixlafiles fixpackages metadata-transfer news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FETCHCOMMAND="/usr/bin/wget -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
FETCHCOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}""
FETCHCOMMAND_SFTP="bash -c "x=\${2#sftp://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec sftp -P \${port} \"\${host}:/\${x#*/}\" \"\$1\"" sftp "${DISTDIR}/${FILE}" "${URI}""
FETCHCOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}""
FFLAGS=""
FLTK_DOCDIR="/usr/share/doc/fltk-1.3.0/html"
GCC_SPECS=""
GDK_USE_XFT="1"
GENTOO_MIRRORS="http://mirrors.sgu.ru/gentoo/"
GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx"
GRUB_PLATFORMS=""
GSETTINGS_BACKEND="dconf"
HG="/usr/bin/hg"
HOME="/root"
INFOPATH="/usr/share/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.22/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/info"
INPUT_DEVICES="keyboard mouse vmmouse evdev synaptics"
JAVAC="/etc/java-config-2/current-system-vm/bin/javac"
JAVACC_HOME="/usr/share/javacc/"
JAVA_HOME="/etc/java-config-2/current-system-vm"
JDK_HOME="/etc/java-config-2/current-system-vm"
KERNEL="linux"
LANG="ru_RU.utf8"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LDFLAGS_amd64="-m elf_x86_64"
LDFLAGS_x32="-m elf32_x86_64"
LDFLAGS_x86="-m elf_i386"
LESS="-R -M --shift 5"
LESSOPEN="|lesspipe %s"
LIBDIR_amd64="lib64"
LIBDIR_amd64_fbsd="lib64"
LIBDIR_n32="lib32"
LIBDIR_n64="lib64"
LIBDIR_o32="lib"
LIBDIR_ppc="lib32"
LIBDIR_ppc64="lib64"
LIBDIR_s390="lib32"
LIBDIR_s390x="lib64"
LIBDIR_sparc32="lib32"
LIBDIR_sparc64="lib64"
LIBDIR_x32="libx32"
LIBDIR_x86="lib32"
LIBDIR_x86_fbsd="lib32"
LINGUAS="ru en"
LOGNAME="root"
LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:"
MAIL="/var/mail/root"
MAKEOPTS="-j5"
MANPATH="/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.22/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/man:/etc/java-config/system-vm/man/:/usr/lib64/php5.4/man/:/usr/share/postgresql/man/:/usr/share/postgresql-9.1/man/:/usr/share/postgresql-9.0/man/"
MULTILIB_ABIS="amd64 x86"
MULTILIB_STRICT_DENY="64-bit.*shared object"
MULTILIB_STRICT_DIRS="/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib"
MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage|udev)"
NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml"
NOCOLOR="true"
OPENGL_PROFILE="nvidia"
PAGER="/usr/bin/less"
PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3"
PHP_TARGETS="php5-3"
PKGDIR="/mnt/packages"
PORTAGE_ARCHLIST="ppc sparc64-freebsd ppc-openbsd x86-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 arm-linux x86-macos x64-openbsd ia64-hpux hppa x86-netbsd x86-cygwin amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris m68k sh x86-solaris sparc-fbsd"
PORTAGE_BINHOST_CHUNKSIZE="3000"
PORTAGE_BIN_PATH="/usr/lib64/portage/bin"
PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png"
PORTAGE_CONFIGROOT="/"
PORTAGE_DEBUG="0"
PORTAGE_DEPCACHEDIR="/var/cache/edb/dep"
PORTAGE_ELOG_CLASSES="log warn error"
PORTAGE_ELOG_MAILFROM="portage@localhost"
PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}"
PORTAGE_ELOG_MAILURI="root"
PORTAGE_ELOG_SYSTEM="save_summary echo"
PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5"
PORTAGE_FETCH_RESUME_MIN_SIZE="350K"
PORTAGE_GID="250"
PORTAGE_GPG_SIGNING_COMMAND="gpg --sign --clearsign --yes --default-key "${PORTAGE_GPG_KEY}" --homedir "${PORTAGE_GPG_DIR}" "${FILE}""
PORTAGE_INST_GID="0"
PORTAGE_INST_UID="0"
PORTAGE_PYM_PATH="/usr/lib64/portage/pym"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_RSYNC_RETRIES="-1"
PORTAGE_SANDBOX_COMPAT_LEVEL="22"
PORTAGE_SYNC_STALE="30"
PORTAGE_TMPDIR="/var/tmp"
PORTAGE_VERBOSE="1"
PORTAGE_WORKDIR_MODE="0700"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/mozilla /var/lib/layman/science /var/lib/layman/mexmat /usr/local/portage"
PORT_LOGDIR="/var/log/portage"
PRELINK_PATH_MASK="/usr/lib64/klibc:/usr/lib64/libfreebl3.so:/usr/lib64/libnssdbm3.so:/usr/lib64/libsoftokn3.so"
PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND"
PWD="/root"
PYTHONDONTWRITEBYTECODE="1"
QT_PLUGIN_PATH="/usr/lib64/kde4/plugins"
RESUMECOMMAND="/usr/bin/wget -c -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
RESUMECOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}""
RESUMECOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}""
ROOT="/"
ROOTPATH="/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3"
RPMDIR="/usr/portage/rpm"
RUBYOPT="-rauto_gem"
RUBY_TARGETS="ruby18"
R_HOME="/usr/lib64/R"
SBCL_HOME="/usr/lib64/sbcl"
SBCL_SOURCE_ROOT="/usr/lib64/sbcl/src"
SHELL="/bin/bash"
SHLVL="1"
SUDO_COMMAND="/bin/bash"
SUDO_GID="1001"
SUDO_UID="1001"
SUDO_USER="faktor"
SYMLINK_LIB="yes"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
TERM="screen"
USE="X acl acpi alsa amd64 apache2 bash-completion berkdb blas boost branding bzip2 cairo chm cli consolekit cpudetection cracklib crypt cups curl cxx dbus directfb djvu dri dvi exif fbcon flac fortran gd gdbm gif gimp gmp gpm gtk iconv imap ipv6 java java6 jpeg jpeg2k kde kerberos lame laptop ldap maildir mbox metis mmx modules mp3 mudflap multilib mysql ncurses nls nocardbus nptl nptlonly opengl openmp pam pcre pdf perl png policykit pppd private-headers python qt3sup port qt4 raw readline samba session spell sql sse sse2 ssl subversion svg synaptics sysfs syslog tcpd tetgen threads tiff truetype udev unicode usb utf8 v4l v4l2 vhosts vim-syntax webkit xinerama xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="alias auth_basic auth_digest authn_anon authn_default authn_file authz_default authz_groupfile authz_host authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif so speling status unique_id vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse vmmouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="ru en" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="vesa nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USER="root"
USERLAND="GNU"
USERNAME="root"
USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CALLIGRA_FEATURES CAMERAS COLLECTD_PLUGINS CROSSCOMPILE_OPTS DRACUT_MODULES DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS GPSD_PROTOCOLS GRUB_PLATFORMS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL OFED_DRIVERS PHP_TARGETS QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS RUBY_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS XFCE_PLUGINS XTABLES_ADDONS"
USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND"
USE_ORDER="env:pkg:conf:defaults:pkginternal:repo:env.d"
VIDEO_CARDS="vesa nvidia"
XDG_CONFIG_DIRS="/etc/xdg"
XDG_DATA_DIRS="/usr/local/share:/usr/share:/usr/share/gdm"
XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
_="/usr/bin/emerge"

=================================================================
                        Package Settings
=================================================================
USE="metis (multilib) supernodal -doc -minimal -static-libs"

sci-libs/cholmod-1.7.4 was built with the following:
CFLAGS="-O0 -march=nocona -pipe -fomit-frame-pointer -pipe"
CXXFLAGS="-O0 -march=nocona -pipe -fomit-frame-pointer -pipe"
Comment 4 Sébastien Fabbro (RETIRED) gentoo-dev 2012-03-13 04:17:22 UTC
should be fixed in cvs. however, please test, i basically replaced an argument in a function call with a value i found in metis-4.
if it breaks other packages, re-open
Comment 5 Helmut Jarausch 2012-03-13 11:27:54 UTC
(In reply to comment #4)
> should be fixed in cvs. however, please test, i basically replaced an
> argument in a function call with a value i found in metis-4.
> if it breaks other packages, re-open

Thanks a lot!

cholmod and all packages depending on it (here) build just fine now.

Helmut.