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Bug 375473 - sci-chemistry/gromacs-4.5.4-r2 fails with multlibstrict
Summary: sci-chemistry/gromacs-4.5.4-r2 fails with multlibstrict
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-07-17 18:37 UTC by Justin Lecher (RETIRED)
Modified: 2011-07-17 19:33 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
/var/log/portage/build/sci-chemistry/gromacs-4.5.4-r2:20110717-183231.log (gromacs-4.5.4-r2:20110717-183231.log,217.34 KB, text/plain)
2011-07-17 18:37 UTC, Justin Lecher (RETIRED)
Details

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Description Justin Lecher (RETIRED) gentoo-dev 2011-07-17 18:37:26 UTC
fix this.

Files matching a file type that is not allowed:
   usr/lib/libgmxpreprocess.so.6
   usr/lib/libgmx.so.6
   usr/lib/libgmxana.so.6
   usr/lib/libmd.so.6
 * ERROR: sci-chemistry/gromacs-4.5.4-r2 failed:
 *   multilib-strict check failed!
 * 
 * Call stack:
 *   misc-functions.sh, line 992:  Called install_qa_check
 *   misc-functions.sh, line 716:  Called die
 * The specific snippet of code:
 *   		[[ ${abort} == yes ]] && die "multilib-stric




$ einfo =sci-chemistry/gromacs-4.5.4-r2
Portage 2.2.0_alpha45 (default/linux/amd64/10.0, gcc-4.6.1-asneeded, glibc-2.13-r4, 2.6.39-lh-r3 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.39-lh-r3-x86_64-Intel-R-_Core-TM-_i7_CPU_860_@_2.80GHz-with-gentoo-2.0.3
Timestamp of tree: Sun, 17 Jul 2011 07:00:01 +0000
ccache version 3.1.5 [disabled]
app-shells/bash:          4.2_p10
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.6.7, 2.7.2, 3.1.4, 3.2
dev-util/ccache:          3.1.5
dev-util/cmake:           2.8.5-r2::science
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.8.3-r1
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1-r1
sys-devel/binutils:       2.21.1
sys-devel/gcc:            4.2.4-r1, 4.3.6, 4.4.5, 4.5.2, 4.6.1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1::last-hope
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.38 (virtual/os-headers)
sys-libs/glibc:           2.13-r4
Repositories: gentoo sunrise bicatali betagarden dummy science last-hope g-ctan
Installed sets: 
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -mtune=corei7 -frecord-gcc-switches -g -Wdisabled-optimization -Wimplicit-function-declaration"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/eselect/ /usr/share/gnupg/qualified.txt /usr/share/nano/ /usr/share/openvpn/easy-rsa /var/lib/hsqldb /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -mtune=corei7 -frecord-gcc-switches -g -Wdisabled-optimization -Wenum-compare"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="-t --jobs=12 --load-average=12 --keep-going --autounmask-write --autounmask"
FEATURES="assume-digests binpkg-logs buildsyspkg collision-protect distlocks ebuild-locks fixlafiles fixpackages metadata-transfer multilib-strict news noinfo parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms sign split-log splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -mtune=corei7 -frecord-gcc-switches -g -Wdisabled-optimization"
GENTOO_MIRRORS=" /mnt/tmpfs/ http://gentoo.j-schmitz.net/mirror/ ftp://ftp.gentoo.mesh-solutions.com/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo/"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common"
LINGUAS="en"
MAKEOPTS="-j16 -l12"
PKGDIR="/usr/portage/packages"
PORTAGE_COMPRESS="xz"
PORTAGE_COMPRESS_FLAGS="-z -e -9 -v"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/data/local/sunrise/reviewed /data/local/bicatali /data/local/betagarden /data/local/dummy /data/local/sci /data/local/lh/ebuilds /data/local/g-ctan"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit 7zip X acpi additions alsa amd64 arpwarp atlas bash-completion berkdb blas branding bzip2 c++ cairo caps cblas ccache cleartype cli command-args consolekit corefonts cracklib crypt cups cupsddk custom-optimization cxx dbus dri dts exif fbcondecor fortran gdbm gif glib glibc-omitfp gmp gnome gnome-keyring gpm graphics gstreamer gtk hddtemp iconv icu ios ipod iproute2 iptables ipv6 ipython javascript jpeg jpeg2k kqemu lapack largefile lcms ldap libnotify libsexy lm_sensors lzma mailtrain md5sum mmx mmxext mng modules mp3 mudflap multilib multiuser nagios-dns nagios-ntp nagios-ping nagios-ssh nano-syntax ncurses network-cron nis nls nptl nptlonly nsplugin objc objc++ opengl openmp openntpd pam pcre pdf perl png policykit pppd pymol python qt-static qt3support readline rrdcgi rrdtool science sensord session smp sqlite sqlite3 sse sse2 sse3 sse4 sse4a sse5 ssl startup-notification svg sysfs system-sqlite tcpd threads tiff truetype type1 udev unicode vaapi vdpau x264 xcb xcomposite xinerama xorg xulrunner zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DRACUT_MODULES="plymouth" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2011-07-17 18:37:43 UTC
Created attachment 280259 [details]
/var/log/portage/build/sci-chemistry/gromacs-4.5.4-r2:20110717-183231.log

build.log
Comment 2 Christoph Junghans (RETIRED) gentoo-dev 2011-07-17 19:21:19 UTC
I just committed a fix, can you test if it works?
Comment 3 Justin Lecher (RETIRED) gentoo-dev 2011-07-17 19:33:23 UTC
Thansk for the quick fix.