dev-lang/R does not compile with glibc-2.14: error is: making xdr_float.d from xdr_float.c making regcomp.d from regcomp.c making regerror.d from regerror.c making xdr_mem.d from xdr_mem.c making regexec.d from regexec.c making xdr_stdio.d from xdr_stdio.c making tre-ast.d from tre-ast.c xdr_mem.c:14:2: error: #error This XDR implementation assumes 4-byte longs make[3]: *** [xdr_mem.d] Błąd 1 It could be because of missing rpc headers in glibc-2.14, from configure options of R: checking rpc/types.h usability... no checking rpc/types.h presence... no checking for rpc/types.h... no checking for XDR support... no (and trying to use built in ones?) Reproducible: Always Steps to Reproduce: 1. Update glibc to 2.14 2. Try to emerge dev-lang/R-2.13.0 Actual Results: Error included above
Created attachment 278163 [details] build.log of dev-lang/R
always post `emerge --info` in your bug reports
Sorry, I forgot: emerge --info Portage 2.2.0_alpha43 (default/linux/amd64/10.0/desktop, gcc-4.5.2, glibc-2.14-r0, 2.6.37.1 x86_64) ================================================================= System uname: Linux-2.6.37.1-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T9300_@_2.50GHz-with-gentoo-2.0.3 Timestamp of tree: Sun, 03 Jul 2011 15:45:01 +0000 app-shells/bash: 4.2_p10 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.2::sage-on-gentoo, 3.1.4, 3.2 dev-util/cmake: 2.8.4-r1 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.0.3 sys-apps/openrc: 0.8.3-r1 sys-apps/sandbox: 2.5 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1-r1 sys-devel/binutils: 2.21.52.0.2 sys-devel/gcc: 4.5.2 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.4-r1 sys-devel/make: 3.82-r1 sys-kernel/linux-headers: 2.6.38 (virtual/os-headers) sys-libs/glibc: 2.14 Repositories: gentoo one my_repo arcon science pure-funtoo mozilla voyageur multimedia qting-edge x11 proaudio lcd-filtering cj-overlay geki-overlay mpd roslin dilfridge sunrise rebutia sage-on-gentoo stuff kde Installed sets: @system ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -floop-interchange -floop-strip-mine -floop-block -pipe -ftree-vectorize -fomit-frame-pointer" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -floop-interchange -floop-strip-mine -floop-block -pipe -ftree-vectorize -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles fixpackages metadata-transfer news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://gentoo.mirror.pw.edu.pl/ http://gentoo.prz.rzeszow.pl/" LANG="pl_PL.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="pl en" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/one /usr/local/portage/ada-overlay /var/lib/layman/arcon /var/lib/layman/science /var/lib/layman/pure-funtoo /var/lib/layman/mozilla /var/lib/layman/voyageur /var/lib/layman/multimedia /var/lib/layman/qting-edge /var/lib/layman/x11 /var/lib/layman/pro-audio /var/lib/layman/lcd-filtering /var/lib/layman/cj-overlay /var/lib/layman/openoffice-geki /var/lib/layman/mpd /var/lib/layman/roslin /var/lib/layman/dilfridge /var/lib/layman/sunrise /var/lib/layman/rebutia /var/lib/layman/sage-on-gentoo /var/lib/layman/stuff /var/lib/layman/kde" SYNC="rsync://rsync1.pl.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 bash-completion berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss enca encode exif fam ffmpeg firefox flac fortran gdbm gdu gif gpm gpu iconv inotify ipv6 jabber jpeg jpeg2k kde laptop latex lcms ldap libnotify lm_sensors mad matplotlib mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly nvidia offensive ogg opengl openmp pam pango pcre pdf perl png policykit ppds pppd python qt3support qt4 readline sdl session slang smp spell sse sse2 sse3 ssl ssse3 startup-notification strong-optimization svg sysfs tcpd threads tiff truetype udev unicode usb vdpau vim-syntax vorbis wicd x264 xcb xcomposite xinerama xml xmpp xorg xulrunner xv xvid zlib zsh-completion" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="pl en" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby19" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
I added a few fixes in the 2.13.1 ebuild that should work.
