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Bug 370013 - gnome-extra/libgda-4.2.8 fails to emerge with USE="doc" due to ACCESS VIOLATION creating /etc/libgda-4.0/config
Summary: gnome-extra/libgda-4.2.8 fails to emerge with USE="doc" due to ACCESS VIOLATI...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] GNOME (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Linux Gnome Desktop Team
URL: https://bugzilla.gnome.org/show_bug.c...
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-06-04 12:06 UTC by Juergen Rose
Modified: 2011-06-07 08:16 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
/var/tmp/portage/gnome-extra/libgda-4.2.8/temp/build.log (build.log,790.60 KB, text/x-log)
2011-06-04 12:09 UTC, Juergen Rose
Details

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Description Juergen Rose 2011-06-04 12:06:36 UTC
'emerge libgda' fails with:
...
make[1]: Nothing to be done for `all-am'.
make[1]: Leaving directory `/var/tmp/portage/gnome-extra/libgda-4.2.8/work/libgda-4.2.8'
>>> Source compiled.
--------------------------- ACCESS VIOLATION SUMMARY ---------------------------
LOG FILE "/var/log/sandbox/sandbox-17598.log"

VERSION 1.0
FORMAT: F - Function called
FORMAT: S - Access Status
FORMAT: P - Path as passed to function
FORMAT: A - Absolute Path (not canonical)
FORMAT: R - Canonical Path
FORMAT: C - Command Line

F: mkdir
S: deny
P: /root/.local/share/libgda
A: /root/.local/share/libgda
R: /root/.local/share/libgda
C: /var/tmp/portage/gnome-extra/libgda-4.2.8/work/libgda-4.2.8/doc/C/.libs/libgda-4.0-scan 

F: open_wr
S: deny
P: /etc/libgda-4.0/config
A: /etc/libgda-4.0/config
R: /etc/libgda-4.0/config
C: /var/tmp/portage/gnome-extra/libgda-4.2.8/work/libgda-4.2.8/doc/C/.libs/libgda-4.0-scan 
--------------------------------------------------------------------------------
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="/usr/libexec/ccp4/bin:" JAVA_HOME="/etc/java-config-2/current-system-vm"
JAVACFLAGS="" COMPILER=""


Reproducible: Always




root@thinkpad:/root(44)# emerge --info
Portage 2.1.9.50 (default/linux/x86/10.0/desktop, gcc-4.5.2, glibc-2.13-r2, 2.6.39 i686)
=================================================================
System uname: Linux-2.6.39-i686-Intel-R-_Pentium-R-_M_processor_2.00GHz-with-gentoo-2.0.2
Timestamp of tree: Sat, 04 Jun 2011 09:00:01 +0000
ccache version 3.1.5 [disabled]
app-shells/bash:          4.2_p10
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.1-r1, 3.2
dev-util/ccache:          3.1.5
dev-util/cmake:           2.8.4-r1
sys-apps/baselayout:      2.0.2
sys-apps/openrc:          0.8.2-r1
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1-r1
sys-devel/binutils:       2.21
sys-devel/gcc:            4.5.2
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82
sys-kernel/linux-headers: 2.6.38 (virtual/os-headers)
sys-libs/glibc:           2.13-r2
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.1 cadsoft"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=pentium-m -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/openvpn/easy-rsa /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.2/ext-active/ /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.2/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.2/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=pentium-m -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -march=pentium-m -fomit-frame-pointer"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp.fi.muni.cz/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo rsync://gd.tuwien.ac.at/opsys/linux/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo http://gentoo.oregonstate.edu"
LANG="en_US.UTF-8"
LC_ALL="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages/"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/arcon /var/lib/layman/java-overlay /var/lib/layman/lordvan /var/lib/layman/pro-audio /var/lib/layman/science /var/lib/layman/sunrise /var/lib/layman/x11 /usr/local/portage /var/lib/cpan /var/lib/g-octave"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="R X Xaw3d a52 aac abiword accessibility acl acpi admin afs alsa amrr ao apache2 applet archive arpack asf aspell assistant audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 cairo cardbus cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib crypt css cups curl cxx daap db dbase dbi dbm dbus declarative designer devhelp device-mapper dga dia djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpx fts3 fuse galago garmin gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp ginac git glade glib gml gmp gmtsuppl gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile harness hddtemp hdf hdf5 hdri http httpd iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java6 jbig john jpeg jpeg2k kdrive kerberos kpathsea ladspa lame lapack laptop latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lua lzo mad madwifi mail maildir mapnik math matroska mkl mmx mmxext mng modules mono moonlight motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numpy obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pam pango pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime readline reiserfs reports rle romio rpc rrdcgi rrdtool samba sasl science sdk sdl secure-delete semantic-desktop server session sip slang slp smbclient sms sndfile snmp soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg svm swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thinkpad threads thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 video virtualbox vorbis wav webdav webdav-serf webkit wifi win32codecs wmf wxwidgets x264 x86 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc yaml zlib zvbi" ALSA_CARDS="intel8x0 ac97_codec emu10k1 emu10k1x" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="radeon vesa displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Juergen Rose 2011-06-04 12:09:26 UTC
Created attachment 275775 [details]
/var/tmp/portage/gnome-extra/libgda-4.2.8/temp/build.log
Comment 2 Pacho Ramos gentoo-dev 2011-06-04 13:56:02 UTC
I didn't suffer this, please post "emerge -pv libgda" output
Comment 3 Alexandre Ferreira 2011-06-05 00:50:43 UTC
I am seeing the same problem. My emerge -pv libgda is:
becky3 portage # emerge -pv libgda

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U  ] gnome-extra/libgda-4.2.8 [4.2.7] USE="berkdb doc graphviz gtk java mysql postgres ssl -bindist -canvas -debug (-firebird) -gnome-keyring -http (-introspection) -json -oci8 -sourceview" 0 kB

Total: 1 package (1 upgrade), Size of downloads: 0 kB
Comment 4 Pacho Ramos gentoo-dev 2011-06-05 11:38:38 UTC
With changes related with setting XDG_* variables properly in gnome2.eclass from overlay, "only" /etc/libgda-4.0/config access is still hurting us :-S


>>> Source compiled.
--------------------------- ACCESS VIOLATION SUMMARY ---------------------------
LOG FILE "/var/log/sandbox/sandbox-7057.log"

VERSION 1.0
FORMAT: F - Function called
FORMAT: S - Access Status
FORMAT: P - Path as passed to function
FORMAT: A - Absolute Path (not canonical)
FORMAT: R - Canonical Path
FORMAT: C - Command Line

F: open_wr
S: deny
P: /etc/libgda-4.0/config
A: /etc/libgda-4.0/config
R: /etc/libgda-4.0/config
C: /var/tmp/portage/gnome-extra/libgda-4.2.8/work/libgda-4.2.8/doc/C/.libs/libgda-4.0-scan 
--------------------------------------------------------------------------------
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm"
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info

>>> Failed to emerge gnome-extra/libgda-4.2.8, Log file:

>>>  '/var/log/portage/build/gnome-extra/libgda-4.2.8:20110605-112559.log'
Comment 5 Pacho Ramos gentoo-dev 2011-06-05 13:16:45 UTC
I have tried to bisect the issue but have failed to even get configure to succeed :-S
Comment 6 Ed Catmur 2011-06-05 22:30:19 UTC
This is being accessed by gda-config to attempt to determine whether the system config can be written:

(gdb) where
#0  gda_gbr_get_file_path (where=GDA_ETC_DIR) at gda-binreloc.c:69
#1  0xb7ea6ec0 in gda_config_constructor (type=134635688, 
    n_construct_properties=0, construct_properties=0x0) at gda-config.c:629
#2  0xb78e04af in g_object_newv (object_type=134635688, n_parameters=0, 
    parameters=0x0) at gobject.c:1398
#3  0xb78e1250 in g_object_new (object_type=134635688, first_property_name=0x0)
    at gobject.c:1308
#4  0xb7ea4c9b in gda_config_get () at gda-config.c:828
#5  0xb7ea624d in gda_config_get_provider_info (
    provider_name=0xb7f7d1b1 "Ldap") at gda-config.c:1248
#6  0xb7ebefde in load_ldap_module () at gda-data-model-ldap.c:107
#7  gda_data_model_ldap_get_type () at gda-data-model-ldap.c:126
#8  0x0804c837 in get_object_types (argc=1, argv=0xbfffc214)
    at libgda-4.0-scan.c:42
#9  main (argc=1, argv=0xbfffc214) at libgda-4.0-scan.c:172

The offending commit is http://git.gnome.org/browse/libgda/commit/doc/C?id=45b1ad1345d9f2f1475ad263c1305c15b19e01c7 as this introduces the type gda_data_model_ldap_get_type which ends up referencing gda-config.

I can't safely see how to avoid this access; addpredict might be indicated.
Comment 7 Gilles Dartiguelongue (RETIRED) gentoo-dev 2011-06-06 08:58:15 UTC
addpredict is not a valid solution here. If doc generation is a problem we will just remove it as the tarball ships with a pre-generated one anyway.
Comment 8 Pacho Ramos gentoo-dev 2011-06-07 08:16:51 UTC
+  07 Jun 2011; Pacho Ramos <pacho@gentoo.org> libgda-4.2.8.ebuild,
+  +files/libgda-4.2.8-sandbox-fix.patch:
+  Fix sandbox violations with USE doc, bug #370013, upstream #651922.
+