359249 – dev-lang/R is missing libs during linking

Bug 359249 - dev-lang/R is missing libs during linking

Summary: dev-lang/R is missing libs during linking

Status:	RESOLVED FIXED

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	High normal (vote)
Assignee:	Gentoo Science Mathematics related packages

URL:
Whiteboard:
Keywords:

Depends on:
Blocks:

Reported:	2011-03-17 07:26 UTC by Justin Lecher (RETIRED)
Modified:	2011-07-20 20:02 UTC (History)
CC List:	0 users

See Also:
Package list:
Runtime testing required:	---

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Description Justin Lecher (RETIRED) gentoo-dev

2011-03-17 07:26:11 UTC

libRmath.so is missing libm
perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so is probably missing libperl

# ldd -r $(qlist R | grep so$)> /dev/null
undefined symbol: sincos	(/usr/lib64/libRmath.so)
undefined symbol: sqrt	(/usr/lib64/libRmath.so)
undefined symbol: lgamma	(/usr/lib64/libRmath.so)
undefined symbol: floor	(/usr/lib64/libRmath.so)
undefined symbol: log1p	(/usr/lib64/libRmath.so)
undefined symbol: ceil	(/usr/lib64/libRmath.so)
undefined symbol: trunc	(/usr/lib64/libRmath.so)
undefined symbol: tan	(/usr/lib64/libRmath.so)
undefined symbol: log	(/usr/lib64/libRmath.so)
undefined symbol: atan	(/usr/lib64/libRmath.so)
undefined symbol: expm1	(/usr/lib64/libRmath.so)
undefined symbol: sinh	(/usr/lib64/libRmath.so)
undefined symbol: fmod	(/usr/lib64/libRmath.so)
undefined symbol: exp	(/usr/lib64/libRmath.so)
undefined symbol: sin	(/usr/lib64/libRmath.so)
undefined symbol: hypot	(/usr/lib64/libRmath.so)
undefined symbol: rint	(/usr/lib64/libRmath.so)
undefined symbol: pow	(/usr/lib64/libRmath.so)
undefined symbol: cos	(/usr/lib64/libRmath.so)
undefined symbol: log10	(/usr/lib64/libRmath.so)
undefined symbol: PL_unitcheckav	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_curpad	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_stack_sp	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_op	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_markstack_ptr	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_sv_yes	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_sv_undef	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_scopestack_ix	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_stack_max	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_na	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PL_stack_base	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_setiv	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_free	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_get_sv	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: PerlIO_fast_gets	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_call_list	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_2mortal	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_my_setenv	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_vstringify	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_form	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_newSVsv	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_vcmp	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_PerlIO_get_cnt	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_free2	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_stack_grow	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_newmortal	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_PerlIO_fileno	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_mg_set	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_2io	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_newSViv	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_hv_common_key_len	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_upg_version	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_PerlIO_stdin	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_newSVpv	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_2iv_flags	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_croak_xs_usage	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_new_version	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_croak	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_newXS	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_newSV_type	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_2nv	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_derived_from	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_newSVpvf	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_newSVpvn	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)
undefined symbol: Perl_sv_2pv_flags	(/usr/lib64/perl5/vendor_perl/5.12.2/x86_64-linux/auto/Term/ReadKey/ReadKey.so)

Comment 1 Sébastien Fabbro (RETIRED) gentoo-dev

2011-07-20 19:58:19 UTC

fixed in 2.13.1