/usr/bin/fop is produced by both package. Patch to fix e-build is attached. Reproducible: Always Steps to Reproduce: 1. emerge dev-java/fop 2. emerge sci-biology/codonw (from science overlay) 3.
Created attachment 253661 [details] ebuild patch rename fop as fop-codonw
What's the reason behind those links???
(In reply to comment #2) > What's the reason behind those links??? > The reason seems to be to allow the executable to behave differently based on the name with which it is called. I do not know why the authors thought this was a better idea than command-line arguments. I have never used the "fop" version of this command, so I don't terribly care if using it this way breaks some behavior. I do care about things that depend on dev-java/fop. YMMV.
+*codonw-1.4.4-r2 (30 May 2015) + + 30 May 2015; Justin Lecher <jlec@gentoo.org> +codonw-1.4.4-r2.ebuild, + -codonw-1.4.4-r1.ebuild, metadata.xml: + sci-biology/codonw: Workaround file collision by appending PN to every + command, bug #344713, bug #550388 +