I don't know whether 3.1.0 is also affected, but soqt doesn't use the pkg-config file, but the old coin-config interface. checking for IceConnectionNumber in -lICE... yes checking how to include gl.h... #include <GL/gl.h> checking for coin-config... /usr/bin/coin-config checking if we can compile and link with the Coin library... false configure: WARNING: Compilation and/or linking with the Coin main library SDK failed, for unknown reason. If you are familiar with configure-based configuration and building, investigate the 'config.log' file for clues. If you can not figure out what went wrong, please forward the 'config.log' file to the email address <coin-support@coin3d.org> and ask for help by describing the situation where this failed. configure: error: couldn't compile and link against Coin !!! Please attach the following file when seeking support: !!! /var/tmp/portage/media-libs/SoQt-1.5.0/work/SoQt-1.5.0/config.log * ERROR: media-libs/SoQt-1.5.0 failed: * econf failed * * Call stack: * ebuild.sh, line 48: Called src_configure $ sudo einfo Portage 2.2_rc67 (default/linux/amd64/10.0, gcc-4.4.4-asneeded, glibc-2.11.2-r0, 2.6.34-gentoo x86_64) ================================================================= System uname: Linux-2.6.34-gentoo-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q6600_@_2.40GHz-with-gentoo-2.0.1 Timestamp of tree: Sat, 26 Jun 2010 06:30:22 +0000 distcc 3.1 x86_64-pc-linux-gnu [disabled] ccache version 2.4 [enabled] app-shells/bash: 4.0_p37 dev-java/java-config: 2.1.10 dev-lang/python: 2.5.4-r4, 2.6.5-r2, 3.1.2-r3 dev-util/ccache: 2.4-r8 dev-util/cmake: 2.8.1-r2 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.6.1-r1 sys-apps/sandbox: 2.2 sys-devel/autoconf: 2.13, 2.65-r1 sys-devel/automake: 1.6.3-r1, 1.9.6-r3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 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LESSOPEN="|lesspipe.sh %s" LIBDIR_amd64="lib64" LIBDIR_amd64_fbsd="lib64" LIBDIR_ppc="lib32" LIBDIR_ppc64="lib64" LIBDIR_sparc32="lib32" LIBDIR_sparc64="lib64" LIBDIR_x86="lib32" LIBDIR_x86_fbsd="lib32" LIBRARY_PATH="/opt/intel/Compiler/11.1/072/lib/intel64" LINGUAS="en" LOGNAME="root" LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:" MAKEOPTS="-j12 -l8" MANPATH="/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.20.1/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.4.4/man:/opt/intel/Compiler/11.1/072/man/en_US:/etc/java-config/system-vm/man/:/opt/nmrpipe/man" MARSHOME="/opt/mars" MULTILIB_ABIS="amd64 x86" MULTILIB_STRICT_DENY="64-bit.*shared object" MULTILIB_STRICT_DIRS="/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib" MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage)" NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" NLSPATH="/opt/intel/Compiler/11.1/072/lib/locale/en_US/%N" NMRBASE="/opt/nmrpipe" NMRBINTYPE="linux9" NMRTXT="/opt/nmrpipe/nmrtxt" NOCOLOR="true" OMNIORB_CONFIG="/etc/omniorb/omniORB.cfg" OMP_NUM_THREADS="4" OPENGL_PROFILE="nvidia" PATH="/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin:/opt/bin:/opt/vmware/server/bin:/opt/vmware/vix/bin:/data/scripts/" PKGDIR="/usr/portage/packages" PORTAGE_ARCHLIST="ppc x86-openbsd ppc-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 arm-linux x86-macos x64-openbsd ia64-hpux hppa x86-netbsd amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd" PORTAGE_BINHOST_CHUNKSIZE="3000" PORTAGE_BIN_PATH="/usr/lib64/portage/bin" PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png" PORTAGE_CONFIGROOT="/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" PORTAGE_ELOG_CLASSES="info warn error log qa *" PORTAGE_ELOG_MAILFROM="portage@localhost" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="root" PORTAGE_ELOG_SYSTEM="save echo" PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" PORTAGE_FETCH_RESUME_MIN_SIZE="350K" PORTAGE_GID="250" PORTAGE_GPG_DIR="~/.gnupg/" PORTAGE_GPG_KEY="70EB7916" PORTAGE_INST_GID="0" PORTAGE_INST_UID="0" PORTAGE_PYM_PATH="/usr/lib64/portage/pym" PORTAGE_REPO_DUPLICATE_WARN="0" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_RSYNC_RETRIES="3" PORTAGE_SYNC_STALE="30" PORTAGE_TMPDIR="/var/tmp" PORTAGE_VERBOSE="1" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/data/layman/sunrise /data/layman/science /data/local/allenjb" PRELINK_PATH_MASK="/lib/modules:/usr/lib/locale:/usr/lib/wine:/usr/lib/valgrind:*.la:*.png:*.py:*.pl:*.pm:*.sh:*.xml:*.xslt:*.a:*.js:/usr/lib64/klibc:/usr/lib64/libfreebl3.so:/usr/lib64/libnssdbm3.so:/usr/lib64/libsoftokn3.so" PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND" PWD="/data/scripts" PYMOL_DATA="/usr/share/pymol/data" PYMOL_PATH="//usr/lib64/python2.6/site-packages/pymol" PYMOL_SCRIPTS="/usr/share/pymol/scripts" PYTHONDONTWRITEBYTECODE="1" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" QUICKPKG_DEFAULT_OPTS="--umask=0011 --include-config=y" RESUMECOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}" ROOT="/" ROOTPATH="/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.4.4:/opt/intel/Compiler/11.1/072/bin/intel64:/data/scripts/" RPMDIR="/usr/portage/rpm" RUBY_TARGETS="ruby18" R_HOME="/usr/lib64/R" SHELL="/bin/bash" SHLVL="1" STAGE1_USE="multilib nptl nptlonly unicode" SUDO_COMMAND="/data/scripts//einfo" SUDO_GID="2069" SUDO_UID="2069" SUDO_USER="justin" SURF_DIR="/opt/nmrpipe/dynamo/surface" SYMINFO="/usr/share/ccp4/data/syminfo.lib" SYMLINK_LIB="yes" SYMOP="/usr/share/ccp4/data/symop.lib" SYNC="rsync://rsync.gentoo.org/gentoo-portage" TALOSP_DIR="/opt/nmrpipe/talosplus" TALOS_DIR="/opt/nmrpipe/talos" TCLPATH="/opt/nmrpipe/com" TERM="rxvt-unicode" USE="7zip X acl acpi additions alsa amd64 apbs automount bash-completion berkdb blas branding bzip2 cairo cblas cleartype cli cracklib cups custom-optimization cxx dbus deprecated discouraged double-precision dri dts dvdr emboss fastcgi fbcon fbcondecor fbsplash fftw fortran gd gdbm gecko gif glibc-omitfp gmp gnome gnome-keyring gpm grub gtk hddtemp icc iconv ifc imlib java javascript jpeg lapack largefile ldap libsexy libv4l2 lm_sensors md5sum mmap mmx mmxext modules mp3 mudflap multicall multilib multiprocess multiuser nano-syntax ncurses network-cron networking nls nptl nptlonly nsplugin numpy nvidia opengl openmp openssl optimize-cflags pam pcre perl png pppd pymol python qt-static qt3support readline reflection rrdcgi rtsp sdl sensord session smp spl sse sse2 ssl ssse3 startup-notification svg svgz swat sysfs system-sqlite tcpd tiff truetype type1 unicode v4l v4l2 vorbis x264 xcb xcomposite xinerama xorg xulrunner zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USER="root" USERLAND="GNU" USERNAME="root" USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS RUBY_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS XTABLES_ADDONS" USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" USE_PYTHON="2.5 2.6 3.1" VBOX_APP_HOME="/opt/VirtualBox" VIDEO_CARDS="nvidia v4l" XAUTHORITY="/home/justin/.Xauthority" XCURSORS_THEME="Jimmac" XDG_CONFIG_DIRS="/etc/xdg" XDG_DATA_DIRS="/usr/local/share:/usr/share:/usr/share/gdm" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" XZ_OPT="--memory=max" _="/usr/bin/emerge"
Created attachment 236627 [details] /var/tmp/portage/media-libs/SoQt-1.5.0/temp/build.log build.log
Hmm, strange but unable to reproduce :| Works here, maybe it depends on some coin USE flag? Please reemerge coin and try again (there were some minor changes since 3.1.3 was initially added).
Okay I think the problem is that either there is a missing lib or libcoin is missing symbols. From the config log configure:23752: x86_64-pc-linux-gnu-g++ -o conftest -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -g -Wno-deprecated -O2 -march=core2 -pipe -fomit-frame-pointer -mssse3 -mcx16 -mmmx -frecord-gcc-switches -g -Wno-deprecated -I/usr/include/coin -I/usr/include/coin/Inventor/annex -I/usr/include/freetype2 -DUSE_SYSTEM_EXPAT -D_REENTRANT -Wl,-O1,--hash-style=gnu,--sort-common,--as-needed -L/usr/lib64 -Wl,-O1,--hash-style=gnu,--sort-common,--as-needed conftest.cpp -lCoin -lGL -lXext -lSM -lICE -lX11 -lbz2 -lz -lfreetype -lfontconfig -ldl -lpthread >&5nce to `XML_SetUserData' /usr/lib64/libCoin.so: undefined reference to `XML_GetCurrentLineNumber' /usr/lib64/libCoin.so: undefined reference to `XML_ParserFree' /usr/lib64/libCoin.so: undefined reference to `XML_SetElementHandler' /usr/lib64/libCoin.so: undefined reference to `XML_GetCurrentColumnNumber' /usr/lib64/libCoin.so: undefined reference to `XML_SetCharacterDataHandler' /usr/lib64/libCoin.so: undefined reference to `XML_GetErrorCode' /usr/lib64/libCoin.so: undefined reference to `XML_SetProcessingInstructionHandler' /usr/lib64/libCoin.so: undefined reference to `XML_GetBuffer' /usr/lib64/libCoin.so: undefined reference to `XML_ParserCreate' /usr/lib64/libCoin.so: undefined reference to `XML_UseParserAsHandlerArg' /usr/lib64/libCoin.so: undefined reference to `XML_Parse' /usr/lib64/libCoin.so: undefined reference to `XML_ParseBuffer' collect2: ld returned 1 exit status configure:23752: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "SoQt" | #define PACKAGE_TARNAME "soqt"
Expat. surprise, surprise
Ok, here's a story. media-libs/coin bundles expat, in 3.1.3 upstream provides --enable-system-expat which... doesn't work. And because they don't provide their .m4 files in tarball (they are available at http://hg.sim.no/simacros/default/file/c9c336b0ae4f/cfg/m4), we cannot easily bootstrap autotools after playing with Makefile.am/configure.ac files to fix this without them. And I'm not going to bother with patching generated files - those two or three (coin, SoQt, quarter) packages are not worth the effort. I've applied workaround which appears to not really work and now I've reverted it to use bundled expat so your linking issue will be gone. As for using system expat, I'm going to wait for next patch release.
currently it is fixed.
