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Bug 298660 - x11-wm/openbox-3.4.9 does not emerge because of file collision with sci-chemistry/openbabel-2.2.3
Summary: x11-wm/openbox-3.4.9 does not emerge because of file collision with sci-chemi...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High minor (vote)
Assignee: David Shakaryan (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2009-12-28 09:52 UTC by Juergen Rose
Modified: 2009-12-30 16:33 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description Juergen Rose 2009-12-28 09:52:57 UTC
'emerge openbox' fails with:
...
 * Messages for package x11-wm/openbox-3.4.9:

 * This package will overwrite one or more files that may belong to other
...
* Detected file collision(s):
 * 
 *      /usr/bin/obprop
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * sci-chemistry/openbabel-2.2.3
 *      /usr/bin/obprop


Reproducible: Always




root@tarantel:/root(58)# emerge --info
Portage 2.1.7.16 (default/linux/x86/10.0/desktop, gcc-4.4.2, glibc-2.11-r1, 2.6.31-gentoo-r6 i686)
=================================================================
System uname: Linux-2.6.31-gentoo-r6-i686-AMD_Athlon-tm-_Processor-with-gentoo-2.0.1
Timestamp of tree: Mon, 28 Dec 2009 00:00:01 +0000
distcc 3.1 i686-pc-linux-gnu [disabled]
app-shells/bash:     4.0_p35
dev-java/java-config: 2.1.10
dev-lang/python:     2.5.4-r2, 2.6.4, 3.1.1-r1
dev-python/pycrypto: 2.1.0
dev-util/cmake:      2.8.0
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.0
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.65
sys-devel/automake:  1.4_p6-r1, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.3, 1.11.1
sys-devel/binutils:  2.20
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.30-r1
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=athlon -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=athlon -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -march=athlon -fomit-frame-pointer"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp.fi.muni.cz/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo rsync://gd.tuwien.ac.at/opsys/linux/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo http://gentoo.oregonstate.edu http://212.219.247.17/sites/www.ibiblio.org/gentoo/ ftp://ftp6.uni-erlangen.de/pub/mirrors/gentoo http://ftp6.uni-erlangen.de/pub/mirrors/gentoo ftp://vlaai.snt.ipv6.utwente.nl/pub/os/linux/gentoo/ http://www.gigaload.org/gentoo.org/"
LDFLAGS="-Wl,-O1"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages/"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/layman/zugaina /usr/local/portage/layman/java-overlay /usr/local/portage/layman/science /usr/local/portage/layman/dotnet /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X Xaw3d a52 aac acl acpi administrator afs alsa amrr ao aotuv apache2 asf aspell audacious audiofile automount bash-completion beagle berkdb bjam blas bluetooth boo boost branding bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib crypt cups curl cxx daap dbus device-mapper dga dia djvu doc dri ds2490 dts dv dvb dvd dvdr dvi dxr3 eds elf emacs emboss encode epiphany esd evo examples exif expat extra extras fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fts3 fuse galago gd gdal gdbm geolocation geos gif gimp ginac git glade glib glitz gml gmp gnokii gnome gnome-keyring gnuplot gnutls gphoto2 gpm graphics graphviz gs gsl gsm gstreamer gtk guile hal hardened harness hddtemp hdf hdf5 hlapi http httpd iconv icq icu id3 ide imagemagick imap innodb ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kde kerberos kexi kpathsea ladspa lame lapack latex lcms ldap libffi libgda libnotify libsamplerate lirc lm_sensors lua lzo mad mail maildir mailwrapper math matroska mikmod mmx mmxext mng modules mono motif mozdevelop mozilla mp3 mp4 mpeg mplayer mtp mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp pam pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python qhull qt3support qt4 quicktime readline reflection reiserfs rle rpc rrdcgi rrdtool samba sasl science sdl server session slang slp smbclient sndfile snmp soup sox speex spell spl sql sqlite ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora threads thunar thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit win32codecs wmf wxwidgets x264 x86 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse                evdev               " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="ide websvccommon nb harness apisupport groovy gsf j2ee java xml" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="ati vesa" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Rafał Mużyło 2009-12-28 11:48:57 UTC
Already fixed upstream - renamed to obxprop
Comment 2 Ben de Groot (RETIRED) gentoo-dev 2009-12-28 18:27:05 UTC
While the upstream bug[1] is closed, I don't see any relevant commit in their repo[2]...

1: http://bugzilla.icculus.org/show_bug.cgi?id=4419
2: http://git.icculus.org/?p=mikachu/openbox.git;a=summary
Comment 3 Ben de Groot (RETIRED) gentoo-dev 2009-12-28 18:30:41 UTC
Okay, found it: http://git.icculus.org/?p=dana/openbox.git;a=commitdiff_plain;h=6d8b7bd5f7ede1803c1259f5c1b760e5dbf4dbe3;hp=1fb198410e9d3ca660d91d1049249db0f2f47732

We should apply this, but I need dinner first. ;-)
Comment 4 Juergen Rose 2009-12-29 12:43:54 UTC
The issue is still present for me.
Comment 5 Ben de Groot (RETIRED) gentoo-dev 2009-12-30 16:33:03 UTC
Patch added in 3.4.9-r1. Thanks for reporting.