Error while loading Tools, Engines and Extension. Messages from avogadro: Traceback (most recent call last): File "/usr/share/libavogadro/toolScripts/template.py", line 2, in <module> import Avogadro ImportError: /usr/lib64/python2.5/site-packages/Avogadro.so: undefined symbol: _ZTIN8Avogadro12MoleculeListE PythonTool: checking /usr/share/libavogadro/toolScripts/template.py... - no module Traceback (most recent call last): File "/usr/share/libavogadro/engineScripts/wireframe.py", line 2, in <module> import Avogadro ImportError: /usr/lib64/python2.5/site-packages/Avogadro.so: undefined symbol: _ZTIN8Avogadro12MoleculeListE PythonEngine: checking /usr/share/libavogadro/engineScripts/wireframe.py... - no module Traceback (most recent call last): File "/usr/share/libavogadro/extensionScripts/example.py", line 3, in <module> import Avogadro ImportError: /usr/lib64/python2.5/site-packages/Avogadro.so: undefined symbol: _ZTIN8Avogadro12MoleculeListE PythonExtension: checking /usr/share/libavogadro/extensionScripts/example.py... - no module Traceback (most recent call last): File "/usr/share/libavogadro/toolScripts/template.py", line 2, in <module> import Avogadro ImportError: /usr/lib64/python2.5/site-packages/Avogadro.so: undefined symbol: _ZTIN8Avogadro12MoleculeListE PythonTool: checking /usr/share/libavogadro/toolScripts/template.py... - no module Traceback (most recent call last): File "/usr/share/libavogadro/extensionScripts/example.py", line 3, in <module> import Avogadro ImportError: /usr/lib64/python2.5/site-packages/Avogadro.so: undefined symbol: _ZTIN8Avogadro12MoleculeListE PythonExtension: checking /usr/share/libavogadro/extensionScripts/example.py... - no module Traceback (most recent call last): File "/usr/share/libavogadro/engineScripts/wireframe.py", line 2, in <module> import Avogadro ImportError: /usr/lib64/python2.5/site-packages/Avogadro.so: undefined symbol: _ZTIN8Avogadro12MoleculeListE PythonEngine: checking /usr/share/libavogadro/engineScripts/wireframe.py... - no module Reproducible: Always sci-chemistry/avogadro-0.9.1 USE="glsl python" dev-lang/python-2.5.4-r2 USE="berkdb doc examples gdbm ipv6 ncurses readline sqlite ssl threads tk ucs2 wininst xml -build"
emerge --info Portage 2.2_rc23 (default/linux/amd64/2008.0, gcc-4.3.3, glibc-2.9_p20081201-r2, 2.6.28-gentoo-r2 x86_64) ================================================================= System uname: Linux-2.6.28-gentoo-r2-x86_64-AMD_Athlon-tm-_64_X2_Dual_Core_Processor_5200+-with-glibc2.2.5 Timestamp of tree: Thu, 19 Feb 2009 01:45:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 3.2_p48-r1 dev-java/java-config: 1.3.7-r1, 2.1.7 dev-lang/python: 2.5.4-r2 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r8 dev-util/cmake: 2.6.2-r1 sys-apps/baselayout: 2.0.0 sys-apps/openrc: 0.4.3-r1 sys-apps/sandbox: 1.3.7 sys-devel/autoconf: 2.13, 2.63 sys-devel/automake: 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.19.1 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.28-r1 ACCEPT_KEYWORDS="amd64 ~amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=native -mtune=native -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -march=native -mtune=native -pipe" DISTDIR="/distfiles" FEATURES="ccache distlocks fixpackages parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="ru_RU.UTF-8" LC_ALL="" LDFLAGS="-Wl,--hash-style=gnu" LINGUAS="ru en" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/java-overlay /usr/local/portage/layman/kde-testing /usr/local/portage/layman/science /usr/local/portage" SYNC="rsync://mirror.aiya.ru/gentoo-portage" USE="3dnow 3dnowext 7zip X Xaw3d a52 aac acl acpi akonadi alsa amd64 amr apache2 artworkextra audiofile avahi avi berkdb bitmap-fonts bluetooth boost browserplugin bzip2 cairo cdr clamav cli cracklib crypt css cups dbus dirac directfb djvu dri dts dv dvb dvd dvdr dvdread emacs encode exif fbcon ffmpeg fftw flac flash fontforge foomaticdb fortran freetype2 gdbm gif gimp gphoto2 gpm gtk gtk2 guile hal hdf5 htmlhandbook iconv ieee1394 imagemagick imlib ipv6 isdnlog jack java jpeg jpeg2k kde kdeenablefinal kipi kpathsea ladspa lame latex lcms ldap libsamplerate lirc lm_sensors logrotate lzma lzw lzw-tiff mad midi mmap mmx mmxext mng mono mozilla mp2 mp3 mp4 mpeg mudflap multilib mysql ncurses neXt nepomuk nls nptl nptlonly nsplugin ntfs nvidia ogg oggvorbis openal openexr opengl openmp pam pcre pdf pdflib perl pic plasma png postgres ppds pppd python qt qt3 qt4 readline reflection reiserfs schroedinger sdl semantic-desktop sensord session slang slp sndfile sox speex spell spl sqlite3 sse sse2 ssl svg sysfs tcpd theora threads tiff tools truetype truetype-fonts type1-fonts udev unicode usb userlocales utf8 v4l v4l2 vcd visualization vorbis wifi wmf x264 xattr xcb xcomposite xml xml2 xorg xpm xrandr xscreensaver xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard evdev mouse ps2mouse penmount joystik" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="ru en" LIRC_DEVICES="devinput" USERLAND="GNU" VIDEO_CARDS="nvidia nv vesa radeon radeonhd" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
console output: $ avogadro Locale: "C" "/usr/share/libavogadro/i18n/avogadro_C.qm" not found. path = "/usr/share/avogadro/i18n/" "/usr/share/avogadro/i18n/avogadro_C.qm" not found. "System has OpenGL support." "About to test OpenGL capabilities." "OpenGL capabilities found: " "Double Buffering." "Direct Rendering." "Antialiasing." Searching for plugins in "/usr//usr/lib64/avogadro/colors" Searching for plugins in "/usr//usr/lib64/avogadro/engines" Searching for plugins in "/usr//usr/lib64/avogadro/extensions" Searching for plugins in "/usr//usr/lib64/avogadro/tools" Found Extension: "Unknown Python Extension" - "N/A" GLWidget initialisation... GLSL support enabled, OpenGL 2.0 support confirmed. GLWidget initialised... createObjects()
I am looking into this. The plugin loading issue is due to the changes in the new Avogadro ebuild, that will be fixed. The missing symbol I am looking at now.
OK - I just cut a new release today, and bumped to Avogadro 0.9.2. This should fix the issues you point out here, please reopen if not.
