[cut] configure: WARNING: Unrecognized options: --enable-sharedlibs, --with-thread-package, --enable-f77, --enable-f90, --enable-threads [cut] Configuring MPE Profiling System with '--prefix=/usr' '--host=i686-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--enable-sharedlibs=gcc' '--with-thread-package=pthreads' '--enable-f77' '--enable-f90' '--enable-threads=single' '--sysconfdir=/etc/mpich2' '--docdir=//usr/share/doc/mpich2-1.0.8' '--build=i686-pc-linux-gnu' 'build_alias=i686-pc-linux-gnu' 'host_alias=i686-pc-linux-gnu' 'CFLAGS=-O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb' 'LDFLAGS=-Wl,-O1' 'CXXFLAGS=-O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb' 'MPI_CC=/var/tmp/portage/sys-cluster/mpich2-1.0.8/work/mpich2-1.0.8/bin/mpicc' 'MPI_F77=/var/tmp/portage/sys-cluster/mpich2-1.0.8/work/mpich2-1.0.8/bin/mpif77' 'CC=i686-pc-linux-gnu-gcc' 'LIBS=-lpthread -laio ' 'F77=i686-pc-linux-gnu-gfortran' 'FFLAGS= -O2' [cut] === configuring in src/misc (/var/tmp/portage/sys-cluster/mpich2-1.0.8/work/mpich2-1.0.8/src/mpe2/src/misc) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr' '--host=i686-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--enable-sharedlibs=gcc' '--with-thread-package=pthreads' '--enable-f77' '--enable-f90' '--enable-threads=single' '--sysconfdir=/etc/mpich2' '--docdir=//usr/share/doc/mpich2-1.0.8' '--build=i686-pc-linux-gnu' 'build_alias=i686-pc-linux-gnu' 'host_alias=i686-pc-linux-gnu' 'CFLAGS=-O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb' 'LDFLAGS=-Wl,-O1' 'CXXFLAGS=-O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb' 'MPI_CC=/var/tmp/portage/sys-cluster/mpich2-1.0.8/work/mpich2-1.0.8/bin/mpicc' 'MPI_F77=/var/tmp/portage/sys-cluster/mpich2-1.0.8/work/mpich2-1.0.8/bin/mpif77' 'CC=i686-pc-linux-gnu-gcc' 'LIBS=-lpthread -laio ' 'F77=i686-pc-linux-gnu-gfortran' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=. Configuring MPE Miscellaneous Library with '--disable-option-checking' '--prefix=/usr' '--host=i686-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--enable-sharedlibs=gcc' '--with-thread-package=pthreads' '--enable-f77' '--enable-f90' '--enable-threads=single' '--sysconfdir=/etc/mpich2' '--docdir=//usr/share/doc/mpich2-1.0.8' '--build=i686-pc-linux-gnu' 'build_alias=i686-pc-linux-gnu' 'host_alias=i686-pc-linux-gnu' 'CFLAGS=-O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb' 'LDFLAGS=-Wl,-O1' 'CXXFLAGS=-O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb' 'MPI_CC=/var/tmp/portage/sys-cluster/mpich2-1.0.8/work/mpich2-1.0.8/bin/mpicc' 'MPI_F77=/var/tmp/portage/sys-cluster/mpich2-1.0.8/work/mpich2-1.0.8/bin/mpif77' 'CC=i686-pc-linux-gnu-gcc' 'LIBS=-lpthread -laio ' 'F77=i686-pc-linux-gnu-gfortran' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.' [cut] configure: creating ./config.status [cut] Configuration completed. /var/tmp/portage/sys-cluster/mpich2-1.0.8/temp/environment: line 3383: --with-pm=mpd:gforker: command not found * * ERROR: sys-cluster/mpich2-1.0.8 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 3383: Called die * The specific snippet of code: * --with-pm=mpd:gforker --disable-mpe $(use_enable romio) $(use_enable !nocxx cxx) || die; * The die message: * (no error message) Reproducible: Always
Created attachment 182223 [details] build.log
Created attachment 182224 [details] environment
Portage 2.1.6.7 (default/linux/x86/2008.0/desktop, gcc-4.3.3, glibc-2.9_p20081201-r1, 2.6.29-rc4-git4 i686) ================================================================= System uname: Linux-2.6.29-rc4-git4-i686-Mobile_Intel-R-_Pentium-R-_4_-_M_CPU_1.80GHz-with-glibc2.0 Timestamp of tree: Thu, 12 Feb 2009 13:15:01 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] app-shells/bash: 3.2_p48-r1 dev-java/java-config: 1.3.7-r1, 2.1.7 dev-lang/python: 2.5.4-r2 dev-python/pycrypto: 2.0.1-r6 dev-util/cmake: 2.6.2 sys-apps/baselayout: 2.0.0 sys-apps/openrc: 0.4.2 sys-apps/sandbox: 1.3.2 sys-devel/autoconf: 2.13, 2.63 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.19.1 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.28-r1 ACCEPT_KEYWORDS="x86 ~x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /var/bind /var/qmail/alias /var/qmail/control /var/spool/torque /var/vpopmail/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks fixpackages metadata-transfer nostrip parallel-fetch protect-owned sandbox sfperms splitdebug strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://gentoo.mirror.web4u.cz" LDFLAGS="-Wl,-O1" LINGUAS="en cs cz" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/sunrise /usr/local/portage/layman/java-overlay /usr/local/portage/layman/science /usr/local/portage /usr/local/java-experimental /usr/local/portage/layman/java-overlay" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="7zip R X Xaw3d a52 aac aalib ace acl acpi alsa amr amrnb amrwb apache2 audacious audiofile bash-completion bcmath berkdb blas bluetooth boost branding bzip2 cairo cblas cddb cdparanoia cdr clamav cli colordiff compress cpio cracklib crypt cscope css ctype cups curl curlwrappers cxx dbus dga dia directfb djbfft dri dts dv dvb dvd dvdr dvdread eds emacs emboss emf enblend encode enscript exif expat fam fame fat fbcon ffmpeg fftw firefox flac flash foomaticdb fortran fpx ftp gcj gd gdbm ggi gif gimp gimpprint glibc-compat20 glibc-omitfp glut gmp gnuplot gnutls gpgme gphoto2 gpm graphviz gs gsl gstreamer gtk gtkhtml hal hdf hdf5 hp2xx i8x0 icc iconv icu id3 ieee1394 ifc imagemagick imlib inifile innodb isdnlog ithreads jack java javascript jbig jce jikes jpeg jpeg2k kdtree kerberos lame lapack laptop lcms leim libcaca libedit libnotify libwww live lzo lzw mad maildir matroska mhash midi mikmod mime ming mjpeg mmap mmx mng mod_python modperl modplug motif mozilla moznoirc mp2 mp3 mp4 mpeg mpi mpi_njtree mpich2 mplayer mudflap mule musepack mxdatetime mysql mysqli ncurses netcdf netpbm network nls nntp nptl nptlonly nsplugin ntfs numeric ogg opengl openmp pam pango pcmcia pcntl pcre pdf perl plotutils plugin png pnm postproc postscript ppds pppd procmail pymol python qt3 qt3support qt4 quicktime rar raw readline recode reflection reiserfs rpm samba sasl scanner scp seamonkey server session sftp sift slp smime sndfile soap sockets spell spl sqlite srt sse sse2 ssl startup-notification subtitles subversion svg svgz sysfs sysvipc t1lib tcl tcpd tetex theora threads tidy tiff tk transcode truetype unicode urandom usb userlocales uuencode v4l v4l2 vcd vhook vim-syntax vim-with-x vorbis wifi win32codecs wmf wxwindows x264 x86 xanim xcf xfs xft xinerama xinetd xml xorg xpm xprint xsl xslt xulrunner xv xvid xvmc yv12 zip zlib" ALSA_CARDS="intel-8x0m" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config mem_cache mime mime_magic rewrite setenvif speling status unique_id userdir usertrack vhost_alias negotiation" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en cs cz" USERLAND="GNU" VIDEO_CARDS="radeon vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
This is the ebuild from the overlay, correct?
(In reply to comment #4) > This is the ebuild from the overlay, correct? Probably. ;-) I do not know which takes the precedence. Definitely I do not understand why it is not removed from the science overlay when appears in official tree. I have just ran "layman -S" but the ebuild is still present in science overlay. >>> Emerging (1 of 1) sys-cluster/mpich2-1.0.8 from science [cut] Configuration completed. /var/tmp/portage/sys-cluster/mpich2-1.0.8/temp/environment: line 3399: --with-pm=mpd:gforker: command not found * * ERROR: sys-cluster/mpich2-1.0.8 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 3399: Called die * The specific snippet of code: * --with-pm=mpd:gforker --disable-mpe $(use_enable romio) $(use_enable !nocxx cxx) || die;
OK, so when I try to install the ebuild from official tree I get: [ebuild R ] sys-cluster/mpich2-1.0.8 USE="cxx%* -pvfs2* (-nocxx%)" [blocks B ] sys-cluster/mpiexec ("sys-cluster/mpiexec" is blocking sys-cluster/mpich2-1.0.8) * Error: The above package list contains packages which cannot be * installed at the same time on the same system. ('ebuild', '/', 'sys-cluster/mpich2-1.0.8', 'merge') pulled in by mpich2 ('installed', '/', 'sys-cluster/mpiexec-0.82-r1', 'nomerge') pulled in by sys-cluster/mpiexec required by world And do not want to install the renamed mpiexec as I really do not believe things will find the renamed binary. Instead, torque will find its own lousy mpiexec which everybody overwrites with the one with the OSC mpiexec. It is even advised on email torque emails list and I think even in it crappy documentation. Sorry, no go.
Fixed in the overlay, thanks for reporting.
Confirming.
