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Bug#: 221165
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Status: RESOLVED
Resolution: FIXED
Assigned To: Gentoo Science Biology related packages <sci-biology@gentoo.org>
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Reporter: Martin Mokrejš <mmokrejs@ribosome.natur.cuni.cz>
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Filename Description Type Creator Created Size Actions
sample_seq1.aln-1 Resulting alignment - 1st possibility text/plain Olivier Fisette 2008-07-06 21:42 0000 687 bytes Details
sample_seq1.aln-2 Resulting alignment - 2nd possibility text/plain Olivier Fisette 2008-07-06 21:42 0000 687 bytes Details
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Bug 221165 depends on: Show dependency tree
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Description:   Opened: 2008-05-10 05:47 0000 
Please stabilize for x86 and amd64, on May 14 will be a month in the tree. ;-)

------- Comment #1 From Olivier Fisette 2008-07-06 21:41:11 0000 ------- 
Stable on amd64.

x86 and ppc:

To test, after compiling t-coffee, copy the "sample_seq1.fasta" file from
"/usr/share/t-coffee/example" to your home directory. This file contains the
amino acid sequences for four homologs of a protein in different species. Run
"t_coffee sample_seq1.fasta" to have t-coffee align the sequences, calculate
the alignment scores, construct a dendrogram, etc. Output files are created in
the working directory.

You can check the validity of the calculations by comparing the file
"sample_seq1.aln" with the files I am attaching. Both aligments are valid; you
will (should) get one or the other depending on your CPU.

------- Comment #2 From Olivier Fisette 2008-07-06 21:42:20 0000 ------- 
Created an attachment (id=159740) [edit]
Resulting alignment - 1st possibility

------- Comment #3 From Olivier Fisette 2008-07-06 21:42:45 0000 ------- 
Created an attachment (id=159741) [edit]
Resulting alignment - 2nd possibility

------- Comment #4 From Christian Faulhammer 2008-07-08 05:59:42 0000 ------- 
x86 stable

------- Comment #5 From nixnut 2008-07-14 17:02:44 0000 ------- 
ppc stable. closing since we're last.
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