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Bug#: 220877
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Status: RESOLVED
Resolution: FIXED
Assigned To: Gentoo Linux High-Performance Clustering Team <hp-cluster@gentoo.org>
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Version:
Priority:
Severity:
Reporter: Juergen Rose <rose@rz.uni-potsdam.de>
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Bug 220877 depends on: Show dependency tree
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Bug 220877 blocks:
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Additional Comments: (this is where you put emerge --info)







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Description:   Opened: 2008-05-08 09:11 0000
"emerge -vD mpich2" fails with:
root@cheetah:/root(96)# emerge -vD mpich2
...
Creating configure in
/var/tmp/portage/sys-cluster/mpich2-1.0.6/work/mpich2-1.0.6p1/src/mpe2/src/slog2sdk/
...
configure.in:462: warning: AC_CONFIG_SUBDIRS: you should use literals
../../lib/autoconf/status.m4:1092: AC_CONFIG_SUBDIRS is expanded from...
configure.in:462: the top level
Creating configure in
/var/tmp/portage/sys-cluster/mpich2-1.0.6/work/mpich2-1.0.6p1/src/mpe2/src/slog2sdk/src/
...
Creating configure in
/var/tmp/portage/sys-cluster/mpich2-1.0.6/work/mpich2-1.0.6p1/src/mpe2/src/slog2sdk/trace_rlog/
...
configure.in:202: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...):
suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:1973: AC_CACHE_VAL is expanded from...
configure.in:202: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...):
suspicious cache-id, must contain _cv_ to be cached
./libtool.m4:595: AC_LIBTOOL_COMPILER_OPTION is expanded from...
...
 * Applying mpich2-1.0.6-cxx.patch ...                                         
                                                               [ ok ]
 * Applying mpich2-1.0.6-fPIC.patch ...

 * Failed Patch: mpich2-1.0.6-fPIC.patch !
 *  (
/home_cheetah/ftp/pub/portage/sys-cluster/mpich2/files/mpich2-1.0.6-fPIC.patch
)
...
 * Include in your bugreport the contents of:
 * 
 *  
/var/tmp/portage/sys-cluster/mpich2-1.0.6/temp/mpich2-1.0.6-fPIC.patch-23690.out


Reproducible: Always




contents of mpich2-1.0.6-fPIC.patch-23690.out:

***** mpich2-1.0.6-fPIC.patch *****

===================================

PATCH COMMAND:   patch -p0 -g0 -E --no-backup-if-mismatch <
/home_cheetah/ftp/pub/portage/sys-cluster/mpich2/files/mpich2-1.0.6-fPIC.patch

===================================
patching file configure
Hunk #1 FAILED at 8783.
Hunk #2 succeeded at 10123 (offset 286 lines).
Hunk #3 succeeded at 10134 (offset 286 lines).
Hunk #4 succeeded at 11160 (offset 308 lines).
Hunk #5 succeeded at 12911 (offset 340 lines).
Hunk #6 succeeded at 13179 (offset 340 lines).
1 out of 6 hunks FAILED -- saving rejects to file configure.rej
patching file confdb/aclocal_shl.m4
===================================

PATCH COMMAND:   patch -p1 -g0 -E --no-backup-if-mismatch <
/home_cheetah/ftp/pub/portage/sys-cluster/mpich2/files/mpich2-1.0.6-fPIC.patch

===================================
missing header for unified diff at line 3 of patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- configure.orig     2007-10-10 20:59:53.000000000 -0700
|+++ configure  2007-10-10 21:04:17.000000000 -0700
--------------------------
No file to patch.  Skipping patch.
6 out of 6 hunks ignored
can't find file to patch at input line 90
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- confdb/aclocal_shl.m4.orig 2007-05-16 06:39:01.000000000 -0700
|+++ confdb/aclocal_shl.m4      2007-10-10 21:05:15.000000000 -0700
--------------------------
No file to patch.  Skipping patch.
2 out of 2 hunks ignored
===================================

PATCH COMMAND:   patch -p2 -g0 -E --no-backup-if-mismatch <
/home_cheetah/ftp/pub/portage/sys-cluster/mpich2/files/mpich2-1.0.6-fPIC.patch

===================================
missing header for unified diff at line 3 of patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- configure.orig     2007-10-10 20:59:53.000000000 -0700
|+++ configure  2007-10-10 21:04:17.000000000 -0700
--------------------------
No file to patch.  Skipping patch.
6 out of 6 hunks ignored
missing header for unified diff at line 90 of patch
can't find file to patch at input line 90
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- confdb/aclocal_shl.m4.orig 2007-05-16 06:39:01.000000000 -0700
|+++ confdb/aclocal_shl.m4      2007-10-10 21:05:15.000000000 -0700
--------------------------
No file to patch.  Skipping patch.
2 out of 2 hunks ignored
===================================

PATCH COMMAND:   patch -p3 -g0 -E --no-backup-if-mismatch <
/home_cheetah/ftp/pub/portage/sys-cluster/mpich2/files/mpich2-1.0.6-fPIC.patch

===================================
missing header for unified diff at line 3 of patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- configure.orig     2007-10-10 20:59:53.000000000 -0700
|+++ configure  2007-10-10 21:04:17.000000000 -0700
--------------------------
No file to patch.  Skipping patch.
6 out of 6 hunks ignored
missing header for unified diff at line 90 of patch
can't find file to patch at input line 90
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- confdb/aclocal_shl.m4.orig 2007-05-16 06:39:01.000000000 -0700
|+++ confdb/aclocal_shl.m4      2007-10-10 21:05:15.000000000 -0700
--------------------------
No file to patch.  Skipping patch.
2 out of 2 hunks ignored
===================================

PATCH COMMAND:   patch -p4 -g0 -E --no-backup-if-mismatch <
/home_cheetah/ftp/pub/portage/sys-cluster/mpich2/files/mpich2-1.0.6-fPIC.patch

===================================
missing header for unified diff at line 3 of patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- configure.orig     2007-10-10 20:59:53.000000000 -0700
|+++ configure  2007-10-10 21:04:17.000000000 -0700
--------------------------
No file to patch.  Skipping patch.
6 out of 6 hunks ignored
missing header for unified diff at line 90 of patch
can't find file to patch at input line 90
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- confdb/aclocal_shl.m4.orig 2007-05-16 06:39:01.000000000 -0700
|+++ confdb/aclocal_shl.m4      2007-10-10 21:05:15.000000000 -0700
--------------------------
No file to patch.  Skipping patch.
2 out of 2 hunks ignored


root@cheetah:/root(98)# emerge --info
Portage 2.1.5_rc7 (default-linux/x86/2007.0, gcc-4.2.3, glibc-2.7-r2, 2.6.25.1
i686)
=================================================================
System uname: 2.6.25.1 i686 AMD Athlon(tm) XP 1800+
Timestamp of tree: Thu, 08 May 2008 00:35:01 +0000
distcc 2.18.3 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632)
[disabled]
ccache version 2.4 [disabled]
app-shells/bash:     3.2_p39
dev-java/java-config: 1.3.7, 2.1.6
dev-lang/python:     2.4.4-r11, 2.5.2-r2
dev-python/pycrypto: 2.0.1-r6
dev-util/ccache:     2.4-r7
sys-apps/baselayout: 2.0.0
sys-apps/openrc:     0.2.3
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.62
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2,
1.10.1-r1
sys-devel/binutils:  2.18-r1
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   2.2.4
virtual/os-headers:  2.6.25-r1
ACCEPT_KEYWORDS="x86 ~x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=athlon-xp -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/eselect/compiler
/etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext
-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/
/etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-O2 -march=athlon-xp -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="distlocks fixpackages parallel-fetch sandbox sfperms strict
unmerge-orphans userfetch"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror
http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp.fi.muni.cz
/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo
rsync://gd.tuwien.ac.at/opsys/linux/gentoo
ftp://sunsite.informatik.rwth-aachen.de/p
ub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo
http://gentoo.oregonstate.edu"
LDFLAGS=""
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages/All"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --stats --timeout=180 --exclude=/distfi
les --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/science /usr/local/portage
/usr/local/portage/xeffects /usr/local/sci"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X Xaw3d a52 aac acl acpi administrator afs aiglx alsa amrr
ao aotuv apache2 asf atlas auctex audacious audiofile automount bash-c
ompletion beagle berkdb bjam blas bluetooth bonobo boo boost bzip2 c++ cairo
cdda cddb cdf cdio cdparanoia cdr cgi chm cli corba cracklib cran crypt 
cups curl cxx daap dbus device-mapper dga dia divx djvu dlloader dmi dri ds3490
dv dvb dvd dvdr dvi dxr3 dynagraph eds effects elf emacs emboss encod
e epiphany esd evo examples exif expat extra fam fame ffmpeg fftw firefox fits
flac fltk foomaticdb fortran fpx galago gd gdal gdbm geos gif gimp gim
pprint ginac glade glitz gml gmp gnokii gnome gnuplot gnutls gphoto2 gpm
graphics graphviz gs gsl gsm gstreamer gtk guile hal hardened hddtemp hdf hd
f5 hlapi http iconv icq icu id3 imagemagick imap innodb ipv6 irda irmc isdnlog
ithreads jabber java jbig john jpeg jpeg2k kerberos kexi keyring ladsp
a lame lapack latex lcms ldap libgda libsamplerate lirc lm_sensors lua lzo lzw
mad maildir math matroska matrox midi mmx mmxext mng mod mono motif mo
zdevelop mozilla mozsvg mozxmlterm mp3 mp4 mp4live mpeg mpeg2 mplayer mudflap
musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network ne
tworkmanager nfs nls nntp nptl nptlonly nsplugin ntfs numarray numeric obex
ocaml octave odbc ogdi ogg ole opengl openmp pam pcre pda pdf perl plotut
ils plugins png posix postgres postscript pppd preview-latex proj projectx
pstricks python qhull quicktime readline real reflection reiserfs rhythmbo
x rle rpc rrdcgi rrdtool samba sasl science sdl session slang slp sndfile snmp
soup sox speex spell spl sqlite sse sse2 ssl stlport subtitles subvers
ion suexec svg t1lib tcl tcpd tex theora threads thunderbird tidy tiff tk
truetype unicode userlocales utempter v4l2 vorbis win32codecs wmf wxwindows
 x86 xattr xemacs xext xine xml xmlreader xmlrpc xorg xpm xv xvid xvmc zlib
zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix d
share dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter
mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="a
ctions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm
authn_default authn_file authz_dbm authz_default authz_groupfile authz_host
authz_
owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache
env expires ext_filter file_cache filter headers ident imagemap inclu
de info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp
proxy_balancer proxy_connect proxy_http rewrite setenvif so speling st
atus unique_id userdir usertrack vhost_alias" ELIBC="glibc"
INPUT_DEVICES="keyboard mouse                " KERNEL="linux"
LCD_DEVICES="bayrad cfontz 
cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr"
LIRC_DEVICES="hauppauge" USERLAND="GNU" VIDEO_CARDS="mga vesa fbdev"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL,
PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

------- Comment #1 From Markus Dittrich 2008-05-09 13:28:13 0000 -------
Fixed in cvs. Thanks much for the note!

Best,
Markus

------- Comment #2 From Jan Kundrát 2008-05-10 21:09:46 0000 -------
*** Bug 221193 has been marked as a duplicate of this bug. ***

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