Bugzilla Bug 218233

The compilation step on amd64 fails with:

x86_64-pc-linux-gnu-gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o
Psequin -I. -O2 -march=nocona -fomit-frame-pointer -pipe -I../include  -L../lib
-I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN
sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c  sequin7.c
sequin8.c sequin9.c sequin10.c sequinx.c  -lncbicn3d -lddvlib -lvibnet
-lncbidesk -lblastapi -lblast -lncbimmdb  -lncbitxc2 -lncbiid1 -lnetblast
-lncbitool -lblastcompadj -lncbimla  -lncbiNacc -lnetentr -lnetcli -lncbicdr
-lvibrant -lncbiobj -lncbi -L/usr/X11R6/lib -lXmu -Wl,-Bstatic -lXm
-Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl -lm
sequin3.c: In function 'AddBlastTag':
sequin3.c:14805: warning: cast from pointer to integer of different size
sequin3.c: In function 'CommonAddBlastToSeqAnnot':
sequin3.c:14830: warning: cast to pointer from integer of different size
sequin9.c: In function 'UpdatePairToUpdateTitlesDialog':
sequin9.c:13974: warning: large integer implicitly truncated to unsigned type
sequin9.c:13995: warning: large integer implicitly truncated to unsigned type
sequin9.c:14015: warning: large integer implicitly truncated to unsigned type
sequin9.c:14030: warning: large integer implicitly truncated to unsigned type
../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam':
ncbifile.c:(.text+0x153): warning: the use of `tempnam' is dangerous, better
use `mkstemp'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x1a8): undefined reference to `jpeg_std_error'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x1d6): undefined reference to `jpeg_destroy_decompress'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x1fc): undefined reference to `jpeg_CreateDecompress'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x209): undefined reference to `jpeg_stdio_src'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x216): undefined reference to `jpeg_read_header'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x21e): undefined reference to `jpeg_calc_output_dimensions'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x226): undefined reference to `jpeg_start_decompress'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x28b): undefined reference to `jpeg_read_scanlines'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x2c2): undefined reference to `jpeg_finish_decompress'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Jpeg.o): In
function `load_jpeg':
(.text+0x2ca): undefined reference to `jpeg_destroy_decompress'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x7d): undefined reference to `png_check_sig'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x95): undefined reference to `png_create_read_struct'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0xaa): undefined reference to `png_create_info_struct'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0xc8): undefined reference to `png_destroy_read_struct'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x10b): undefined reference to `png_destroy_read_struct'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x130): undefined reference to `png_init_io'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x142): undefined reference to `png_set_sig_bytes'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x157): undefined reference to `png_read_info'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x1a3): undefined reference to `png_get_IHDR'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x202): undefined reference to `png_get_valid'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x24c): undefined reference to `png_get_valid'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x295): undefined reference to `png_get_gAMA'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x2b3): undefined reference to `png_read_update_info'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x2c8): undefined reference to `png_get_rowbytes'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x2eb): undefined reference to `png_get_channels'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x331): undefined reference to `png_destroy_read_struct'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x348): undefined reference to `png_set_gray_to_rgb'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x35a): undefined reference to `png_set_expand'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x3b9): undefined reference to `png_set_gamma'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x3ec): undefined reference to `png_destroy_read_struct'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x422): undefined reference to `png_set_strip_16'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x441): undefined reference to `png_get_bKGD'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x4aa): undefined reference to `png_set_expand'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x4bc): undefined reference to `png_set_expand'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x530): undefined reference to `png_read_image'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x547): undefined reference to `png_read_end'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../lib64/libXm.a(Png.o): In
function `png_load_file':
(.text+0x574): undefined reference to `png_destroy_read_struct'
collect2: ld returned 1 exit status
*** Error code 1

Stop.
pmake: stopped in
/var/tmp/portage/sci-biology/ncbi-tools-20060507/work/ncbi/build


This problem does not happen with sci-biology/ncbi-tools-20080302. Please
stabilize this version for amd64.

Please provide your emerge --info as well.

20080302 stable on x86 and amd64. Thanks for reporting, and sorry for the
delay.